FC878185

Overview
NameFC878185
Unique NameFC878185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length921
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_FRATH (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/238 (34.03%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKNMS 913
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAIS 256          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_FRATF (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/238 (34.03%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKNMS 913
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAIS 256          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_FRAT1 (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/238 (34.03%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKNMS 913
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAIS 256          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 2
Query:  215 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRLS+A+++G    V V+  +LQD+  E+      M  G DV  + +G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLSLARKMGVTRAVNVANESLQDVMNEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_ENT38 (L-threonine 3-dehydrogenase OS=Enterobacter sp. (strain 638) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 82/228 (35.96%), Postives = 125/228 (54.82%), Query Frame = 2
Query:  215 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRLS+A+++G    V VS  NL D+  E+      M  G DV  + +G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLSLARKMGVTRAVDVSKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_ECOLI (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12) GN=tdh PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 83/230 (36.09%), Postives = 127/230 (55.22%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_ECODH (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 83/230 (36.09%), Postives = 127/230 (55.22%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_ECOBW (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 83/230 (36.09%), Postives = 127/230 (55.22%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 85/230 (36.96%), Postives = 125/230 (54.35%), Query Frame = 2
Query:  215 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVSTNLQDIAEEVEKIQKAMG--TGIDVSFDCAG 895
            P LG  D+L++++   ICG+D+H       A   +  PMV+GHE  G +  VG EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  GS A  +V PA   FKLPDN+  E  A+ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V VS       E++  +  A+G   G DV  + +G
Sbjct:   21 PELGHNDLLIKIRKTAICGTDMHIYNWDEWAQKTIPVPMVVGHEYVGEVVAVGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GSFAEYLVIPAFNAFKLPDNIPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVS------KEKLADVMSALGMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.588e-32
Identity = 80/235 (34.04%), Postives = 131/235 (55.74%), Query Frame = 2
Query:  215 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKNMST 916
            P +G  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+   L+D+  E+  + +    G+++S + A FN  ++T
Sbjct:   23 PEVGHNDILIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNR-EGAFAEYLVIPAFNAFKIPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAEEKLEDVMAEL-GMTEGFDVGLEMSGNPAAFNSMLTT 254          
The following BLAST results are available for this feature:
BLAST of FC878185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 331
Match NameE-valueIdentityDescription
TDH_FRATH1.216e-3234.03L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATF1.216e-3234.03L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRAT11.216e-3234.03L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_ENTS81.216e-3235.53L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]
TDH_ENT381.216e-3235.96L-threonine 3-dehydrogenase OS=Enterobacter sp. (s... [more]
TDH_ECOLI1.216e-3236.09L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECODH1.216e-3236.09L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOBW1.216e-3236.09L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_AERS41.216e-3236.96L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_VIBPA1.588e-3234.04L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878185 ID=FC878185; Name=FC878185; organism=Citrus clementina; type=EST; length=921bp
AAATCATATCCCATATCCAGAATCAGAATAAATGGTAGCTTAAAATGTTG
TGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAA
GCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGA
AGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTC
AACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCAGGATG
AAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAG
GTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTG
CTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGT
GACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTG
CAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTC
CGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTA
TGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGA
GCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTG
AGACAAATGTGCTTATCATGGGAGCAGGGCCCATAGGACTTGTCACAATG
CTAGGAGCTCGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGA
TGACTATCGTTTATCTGTTGCAAAGGAACTTGGTGCAGATAATATTGTTA
AAGTTTCAACAAATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAG
AAAGCCATGGGGACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAA
CAAAAACATGTCAACAGCACT
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