FC878194

Overview
NameFC878194
Unique NameFC878194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.147e-19
Identity = 68/213 (31.92%), Postives = 98/213 (46.01%), Query Frame = 3
Query:  183 RAALAEFISTLIFVF--AGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGG 803
            R+ ++E +++ ++VF   G  +G+        GA+  S                     +ISG H+NPAVT    V  +IS +R  +Y  AQ  G      LL  VT     G   +A + S+ + AW     E ++TF LV   Y  + DP K  +G  A  +IG    A       +    +NPA S GP+ V   WD+HWVYW GPL+GG
Sbjct:   66 RSIISECLASFMYVFIVCGAAAGVGV------GASVSSVLLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTF-LVVLCYFVSTDPMKKFMGNSAA-SIGCAYSACCFVSMPY----LNPARSLGPSFVLNKWDSHWVYWFGPLVGG 266          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  354 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            +ISG H NPAVT      G     +   Y +AQ+LG+T+A   L+ +  G+               ++V EI+ TF L++ +   A D +  ++G +A +A+G  +  N+L  G   GASMNPA S GPALVS  + + WVY VGP++G
Sbjct:   96 HISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLMFGGRHEHFPGTLPTGSEVQSLVIEIITTFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALVSGEYTSIWVYVVGPVVG 242          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19
Identity = 70/219 (31.96%), Postives = 104/219 (47.49%), Query Frame = 3
Query:  183 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIG 800
            R  +AEF++T +F++    + M  +K T   A                         +   GH+NPAVTFG F+   +SL R + Y I Q LG+     ++K      ++ NG   +  A   G    + +  EIV TF LVYTV+ +A D K+      +  +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP IG
Sbjct:   54 RPGIAEFVATFLFLYISILTVMGVSKSTSKCATVGIQGIAWSFGGMILALVYCTAGIS---GHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVA--PGYTKGDGLGAEIVGTFILVYTVF-SATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIG 266          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.065e-18
Identity = 68/209 (32.54%), Postives = 95/209 (45.45%), Query Frame = 3
Query:  192 LAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSA------FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            LAE + T   +FAG G+ +  N+ T      P                      +ISG H NPAVT      G     +   Y +AQ+LGST+A L L+ V  G    A      F  +       A   E V++F L++ V   A D +  ++G +A +A+G  V  N+L  G   GASMNPA S GPA+V+  +   WVY   P+ G
Sbjct:   67 LAEILGTYFMIFAGCGA-VVVNQSTGGAVTFPGICAVWGLVVMVLVYTVS----HISGAHFNPAVTVAFATCGRFRWKQVPSYVVAQVLGSTMASLTLRVVFGGGGGGARGEHLFFGTTPAGSMAQAAALEFVISFFLMFVVSGVATDNR--AIGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVYVAAPVSG 268          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  354 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            +ISG H NPAVT    V       +  LY  AQL GS +A L L+ + N    + F  +    +  A+V EI+++F L++ +   A D +  + G +A IA+G  +  N+   G   GASMNPA S GPA+V   +   WVY VGP +G
Sbjct:   95 HISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSR--ATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVG 241          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.100e-18
Identity = 62/203 (30.54%), Postives = 91/203 (44.83%), Query Frame = 3
Query:  192 LAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            +AE + T   +FAG  + +A NK T      P                      +ISG H+NPAVT      G     R   Y  AQ+ GS  A   L+ +  G     F  +       ++  E ++TF L++ V   A D +  ++G +A +A+G  V  N+L  G   GASMNPA + GPA++   +   WVY  GP+ G
Sbjct:   57 IAEILGTFFLIFAG-CAAVAVNKRTGGTVTFPGICITWGLAVMVMVYSVG----HISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQSLAMEFIITFYLMFVVSGVATDNR--AIGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGRYTGIWVYIAGPVFG 252          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.178e-17
Identity = 64/203 (31.53%), Postives = 95/203 (46.80%), Query Frame = 3
Query:  192 LAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            +AE I T   VF+G   G+    + + G  T                       +ISG H NPAVT    +       +  LY  AQ  GS +A L L+ +      + F  +       A+V EI+++F L++ +   A D +  ++G +A IA+G  +  N+   G   GASMNPA S GPALV   + + WVY VGP++G
Sbjct:   46 IAEMIGTYFIVFSG--CGVVVVNVLYGGTIT---FPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFGTTPADSPARALVAEIIISFLLMFVISGVATDNR--AVGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIVGPVLG 241          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.009e-17
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  354 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            +ISG H+NPAVT       +   ++   YW AQ  G+  A  +LK V +          SG   W+A++ EIV+TF +++   A A D +  ++G +A +A+G  V    +  G   G SMNPA +  PA+ S  +   W+Y++GP+IG
Sbjct:  104 HISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLHPIAVIGTTTPSGPH-WHALLIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFLGPVIG 249          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 50/149 (33.56%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  354 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            +ISG H+NPAVT       +   ++   YW AQ  G+  A  +LK V            SG   W+A+  EIV+TF +++   A A D +  ++G +A +A+G  V    +  G   G SMNPA +  PA+ S  +   W+Y++GP++G
Sbjct:  107 HISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQPIAVIGTTTPSGPH-WHALAIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFLGPVVG 252          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.846e-17
Identity = 69/215 (32.09%), Postives = 98/215 (45.58%), Query Frame = 3
Query:  180 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKF-------VTNGQTTSAFALSSGVGA-WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            L+  +AEF+ T   VF G  S +  N    N    P                      +ISG H+NPAVT      G   L +   Y I+Q++GST+A   L+        V +G+    F  SS VG+   A   E ++TF L++ +   A D +  ++G +A +AIG  V  N+L       ASMNP  S GPALV   +   W+Y V P +G
Sbjct:   54 LQKLIAEFLGTYFLVFTGCAS-VVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLG----HISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKH-DVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNR--AIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVYGCYKGIWIYLVAPTLG 260          
The following BLAST results are available for this feature:
BLAST of FC878194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
BIB_DROME2.147e-1931.92Neurogenic protein big brain OS=Drosophila melanog... [more]
NIP11_MAIZE4.782e-1936.91Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
PIP11_MAIZE8.158e-1931.96Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
NIP12_ORYSJ1.065e-1832.54Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP42_ARATH1.391e-1837.58Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
NIP13_ORYSJ3.100e-1830.54Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
NIP41_ARATH1.178e-1731.53Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
NIP22_MAIZE2.009e-1734.23Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
NIP23_MAIZE4.476e-1733.56Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP11_ARATH5.846e-1732.09Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA33CF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878194 ID=FC878194; Name=FC878194; organism=Citrus clementina; type=EST; length=807bp
CAAAAACTACGCATTTCGAATATAAGTAGAAGCTCCTAGTTGAGAAGTGG
AGACCAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAA
TCTTCATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCC
ATCCCCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAG
TTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGC
CTTCAACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCG
CCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGC
GCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTT
CGTTGGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCC
AGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAAC
GGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAA
CGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGT
ATGCCACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCA
ATTGCAATTGGTTTCATTGTAGGAGCCAACATCTTGGCGGGCGGGGCGTT
TGATGGAGCTTCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAA
GCTGGAGCTGGGACAATCACTGGGTCTACTGGGTCGGGCCACTCATCGGT
GGTGGGC
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