FC878194

Overview
NameFC878194
Unique NameFC878194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 53/161 (32.92%), Postives = 79/161 (49.07%), Query Frame = 3
Query:  357 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT-TSAFALSS---------GVGAWNAVVFEIVMT-FGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV--SWSWDNHWVYWVGPLIG 800
            ISGGH NPAV+    V G +     I YW+AQ+LG+     +L  + +G+   SA  L+S         G      ++ EI++T F ++  + +T+     G     APIAIGF +    L        S+NPA S G AL   + +    W++WV PL+G
Sbjct:   57 ISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG----FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADTAALSQLWLFWVAPLVG 213          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  357 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQT---TSAFALSSGVGAWN--------AVVFEIVMT-FGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV--SWSWDNHWVYWVGPLIG 800
            ISG H+NPAV+ G +VGG     + + Y +AQ+LG   A  +L  + +G+     +A   S+G G  +        A+V E+V+T   L+  + AT+    +G     APIAIG  +    L        S+NPA S   AL    W+    W++WV P++G
Sbjct:   56 ISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNGYGEHSPGGYSLQAALVSEVVLTGMFLLIILGATSKRAPQG----FAPIAIGLTLTLIHLISIPVTNTSVNPARSTAVALYVGDWAVSQLWLFWVAPILG 213          
The following BLAST results are available for this feature:
BLAST of FC878194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
AQPZ_BRUSU2.810e-1132.92Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
AQPZ_PSEAE8.177e-1132.72Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA33CF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878194 ID=FC878194; Name=FC878194; organism=Citrus clementina; type=EST; length=807bp
CAAAAACTACGCATTTCGAATATAAGTAGAAGCTCCTAGTTGAGAAGTGG
AGACCAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAA
TCTTCATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCC
ATCCCCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAG
TTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGC
CTTCAACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCG
CCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGC
GCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTT
CGTTGGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCC
AGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAAC
GGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAA
CGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGT
ATGCCACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCA
ATTGCAATTGGTTTCATTGTAGGAGCCAACATCTTGGCGGGCGGGGCGTT
TGATGGAGCTTCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAA
GCTGGAGCTGGGACAATCACTGGGTCTACTGGGTCGGGCCACTCATCGGT
GGTGGGC
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