FC878202

Overview
NameFC878202
Unique NameFC878202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.679e-40
Identity = 89/213 (41.78%), Postives = 142/213 (66.67%), Query Frame = 2
Query:  188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRL----LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVA 793
            D   G+     N+ AC AV+++V+++LGP G+DK++ DD G VTI+NDGATI+++L++ HPAAK+LV++A+ QD EVGDGTT+VV++AAE L+ A   + + +HP ++I  +R A       ++E  K IE + + + ++L    L  CA T++SSKLI G+ +FFA++VV+AV ++   ++       +  I I K  G + RDS+L+NG A
Sbjct:   13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLA-------MRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQSARDSYLLNGYA 218          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.275e-40
Identity = 93/225 (41.33%), Postives = 143/225 (63.56%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVA 793
            MAA+  P  +L     + S G      N+ A   +A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A+ QD EVGDGTT+VV++AAE L+ +   ++  +HP ++I  +R A  +A++ I E   ++   + E  +  L   A T++SSK+IG + +FFASMVVDA  A+   D+       +N I + K  G + ++S LVNG A
Sbjct:    1 MAALEGPLAVL----GERSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINE---NLIINTDELGRDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAVKYTDQKGQARYPINSINVLKAHGRSQKESILVNGYA 218          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.195e-40
Identity = 95/274 (34.67%), Postives = 152/274 (55.47%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943
            MA +    I++L EGT    G+     NI A   +A+ VR+TLGP+GMDK++ D  G + I+NDGATI+  +DI HPAAK++V++AK+QD E GDGTTT V++A E L++A+  ++  +HP  +I+ +  A+ KA + +  +AK ++     + + +L K A T ++ K    E+E+ A + V+AV  +    DG     ++ I  +K  GG + D+ L+ GV   K   + G    PK+                     AEIR++ P Q Q+
Sbjct:    1 MAQLAGQPILILPEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAKEVK----PDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLVAEEKDGKFKVDIDNIKFEKKEGGAVSDTKLIRGVVIDKEVVHPG---MPKRVEKAKIALINDALEVKETETDAEIRITSPEQLQA 267          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.384e-39
Identity = 93/273 (34.07%), Postives = 152/273 (55.68%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQ 940
            MA +    +++L+EGT  + G+     NI A   +A+ VRSTLGP+GMDK++ D  G V I+NDG TI+K +D+ HPAAK+++++AK+QD+EVGDGTTT V+LA E L+ A+  ++  +HP  +   +R A+ KA++ + E+A  I     ++   +L K A T ++ K      +  A + V+AV  I +          + I I+K  GG++ ++ LV+G+   K   + G    PK+                     A+IR++DP + Q
Sbjct:    1 MATLQGQPVLILREGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIAIPIS----KDDDEILKKIATTAMTGKGAEVAIDKLAEIAVNAVKMIAEESNGQVEVNTDYIKIEKRQGGSIEETELVDGIVLDKEVVHPG---MPKRVENAKILLLDSALEVKETEIDAKIRITDPEKLQ 266          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 4.067e-39
Identity = 92/225 (40.89%), Postives = 142/225 (63.11%), Query Frame = 2
Query:  188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            D S G+A    N+ A  ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A  QD EVGDGTT+VV++AAE L+ A   ++  +HP ++I  +R A  +A++ I E   ++   + E  +  L+  A T++SSK+IG   ++FA+MVVDAV A+   D        +N + I K  G +  +S L+NG A        G +  PK+
Sbjct:   10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINE---NLIINADELGRDCLTNTAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPINSVNILKAHGRSQIESMLINGYALN---CVVGSQGMPKR 228          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.312e-39
Identity = 93/225 (41.33%), Postives = 141/225 (62.67%), Query Frame = 2
Query:  188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            D S G+A    N+ A  ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A  QD EVGDGTT+VV++AAE L+ A   ++  +HP ++I  +R A  +A++ I E   ++   + E  +  L   A T++SSK+IG   +FFA+MVVDAV A+   D        +N + I K  G +  +S L+NG A        G +  PK+
Sbjct:   10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE---NLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDLRGQPRYPVNSVNILKAHGRSQVESMLINGYALN---CVVGSQGMPKR 228          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39
Identity = 95/266 (35.71%), Postives = 151/266 (56.77%), Query Frame = 2
Query:  146 AMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQ 934
            A  QP +++L E      G+     NI A   + + VRSTLGP+GMDK++ DD G + ++NDG TI+K + + HPAAK+L+++AK+Q+ EVGDGTTT V++A E LR+A+  ++  VHP  +I+ ++ A  KA + +KE+A  ++     + K +L K A T+++ K     KE    M+V+AV A+ D       ++I I+K  G ++ ++ L+NGV   K        Q PKK                     AEIR++DP++
Sbjct:    2 AANQP-VVVLPENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIAMDVKA----DDKEILHKIAMTSITGKGAEKAKEKLGEMIVEAVTAVVDESGKVDKDLIKIEKKEGASVDETELINGVLIDKE---RVSPQMPKKIENAKIALLNCPIEVKETETDAEIRITDPTK 259          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39
Identity = 94/267 (35.21%), Postives = 152/267 (56.93%), Query Frame = 2
Query:  161 QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGDRL---NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943
            Q+++L EG     G+     NI A   VA+ VR+TLGP GMDK++ D+ G V ++NDG TI++ +DI HPAAK++V++AK+Q+ EVGDGTTT V+LA E L +A+  ++  +HP  + R +R A  KA + ++E+A+ I+     + +  L K A T ++ K +   +++ A +VV AV  +    DG+ +   + I ++K  GG + D+ LV G+   K   + G    P++                     AEIR++DP Q Q+
Sbjct:   10 QVLILPEGYQRFVGRDAQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAEEID----PDDEETLKKIAKTAMTGKGVEKARDYLAELVVKAVKQVAEEEDGEIVIDTDHIKLEKKEGGGLEDTELVKGMVIDKERVHPG---MPRRVENAKIALLNCPIEVKETETDAEIRITDPEQLQA 269          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39
Identity = 89/222 (40.09%), Postives = 142/222 (63.96%), Query Frame = 2
Query:  188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQ 832
            + + G++    N+ A  ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A  QD EVGDGTT+VV++AAE L+ A   ++  +HP ++I  +R A  +A++ I E   ++   + E  K  L   A T++SSK+IG + +FFA+MVVDAV A+   D        +N I + K  G + ++S L+NG A     +  G  ++
Sbjct:   10 ERTTGESIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINE---NLIINTDELGKDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAVKYTDVKGQPRYPVNSINVLKAHGRSQKESMLINGYALNCVVASQGMPKR 228          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39
Identity = 93/225 (41.33%), Postives = 141/225 (62.67%), Query Frame = 2
Query:  188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            D S G+A    N+ A  ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A  QD EVGDGTT+VV++AAE L+ A   ++  +HP ++I  +R A  +A++ I E   ++   + E  +  L   A T++SSK+IG   +FFA++VVDAV AI   D        +N I + K  G +  +S L+NG A        G +  PK+
Sbjct:   10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE---NLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALN---CVVGSQGMPKR 228          
The following BLAST results are available for this feature:
BLAST of FC878202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPA_ARATH3.679e-4041.78T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPA_PALPA6.275e-4041.33T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
THS_PYRAB8.195e-4034.67Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSB_ARCFU2.384e-3934.07Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
TCPA1_MOUSE4.067e-3940.89T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPA_CRIGR5.312e-3941.33T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
THS_METTL6.938e-3935.71Thermosome subunit OS=Methanococcus thermolithotro... [more]
THS_METKA6.938e-3935.21Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
TCPA_MONDO6.938e-3940.09T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA_BOVIN6.938e-3941.33T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878202 ID=FC878202; Name=FC878202; organism=Citrus clementina; type=EST; length=944bp
AATCACTAGAAACAACTAGTCACTGCGCAGTACACACTTGGGATCTCGTC
AGTGTTATTGAACTTGAGTAAGGGGTAAAAAAAAAAAAATCAAACCCTAG
CGTTCTCTCATAAACTTCATTTCGATTTCAATCTCAACAATGGCAGCCAT
GATGCAGCCGCAGATCATTTTATTGAAAGAAGGAACCGACACGTCGCAAG
GAAAGGCTCAGTTGGTGAGCAACATAAACGCGTGCACGGCGGTGGCTGAT
GTGGTGAGGTCGACGCTGGGCCCCAGAGGGATGGACAAGTTGATACACGA
CGACAAGGGCACCGTTACCATCTCTAACGACGGCGCCACCATCATGAAGC
TTCTCGACATCGTCCATCCCGCCGCCAAGATTCTCGTTGACATCGCCAAG
TCTCAGGACTCTGAAGTCGGCGACGGTACCACCACTGTGGTTCTGCTTGC
GGCCGAGTTCTTGAGGGAGGCCAAGCCTTTTATTGAGGATGGAGTTCACC
CTCAGAATTTGATTAGGAGTTTTCGCAACGCCAGCTATAAGGCGATTCAG
AAGATCAAGGAATTGGCTAAAAGCATAGAGGGTCAAAGTTTAGAAGAGAA
GAAAAGACTATTGTCAAAATGTGCTGCCACTACGCTTTCTTCTAAACTTA
TTGGTGGTGAAAAAGAGTTTTTTGCTTCAATGGTTGTAGATGCTGTTGGT
GCAATTGGCGATGGTGATAGGTTGAATATGATTGGAATCAAGAAGGTTCC
AGGTGGTACCATGCGGGATTCCTTTCTAGTAAATGGTGTTGCTTTTAAGA
AGACATTTTCGTATGCAGGCTTTGAACAGCAACCTAAGAAGTTTTTAAAC
CCAAAGATACTCTTATTGAACATTGAGTTGGAACTGAAATCTGAGAAAGA
AAATGCTGAGATAAGACTTTCAGATCCATCACAGTATCAATCAA
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