FC878202
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.679e-40 Identity = 89/213 (41.78%), Postives = 142/213 (66.67%), Query Frame = 2 Query: 188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRL----LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVA 793 D G+ N+ AC AV+++V+++LGP G+DK++ DD G VTI+NDGATI+++L++ HPAAK+LV++A+ QD EVGDGTT+VV++AAE L+ A + + +HP ++I +R A ++E K IE + + + ++L L CA T++SSKLI G+ +FFA++VV+AV ++ ++ + I I K G + RDS+L+NG A Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLA-------MRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQSARDSYLLNGYA 218
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 6.275e-40 Identity = 93/225 (41.33%), Postives = 143/225 (63.56%), Query Frame = 2 Query: 140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVA 793 MAA+ P +L + S G N+ A +A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A+ QD EVGDGTT+VV++AAE L+ + ++ +HP ++I +R A +A++ I E ++ + E + L A T++SSK+IG + +FFASMVVDA A+ D+ +N I + K G + ++S LVNG A Sbjct: 1 MAALEGPLAVL----GERSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINE---NLIINTDELGRDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAVKYTDQKGQARYPINSINVLKAHGRSQKESILVNGYA 218
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 8.195e-40 Identity = 95/274 (34.67%), Postives = 152/274 (55.47%), Query Frame = 2 Query: 140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943 MA + I++L EGT G+ NI A +A+ VR+TLGP+GMDK++ D G + I+NDGATI+ +DI HPAAK++V++AK+QD E GDGTTT V++A E L++A+ ++ +HP +I+ + A+ KA + + +AK ++ + + +L K A T ++ K E+E+ A + V+AV + DG ++ I +K GG + D+ L+ GV K + G PK+ AEIR++ P Q Q+ Sbjct: 1 MAQLAGQPILILPEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAKEVK----PDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLVAEEKDGKFKVDIDNIKFEKKEGGAVSDTKLIRGVVIDKEVVHPG---MPKRVEKAKIALINDALEVKETETDAEIRITSPEQLQA 267
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.384e-39 Identity = 93/273 (34.07%), Postives = 152/273 (55.68%), Query Frame = 2 Query: 140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQ 940 MA + +++L+EGT + G+ NI A +A+ VRSTLGP+GMDK++ D G V I+NDG TI+K +D+ HPAAK+++++AK+QD+EVGDGTTT V+LA E L+ A+ ++ +HP + +R A+ KA++ + E+A I ++ +L K A T ++ K + A + V+AV I + + I I+K GG++ ++ LV+G+ K + G PK+ A+IR++DP + Q Sbjct: 1 MATLQGQPVLILREGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIAIPIS----KDDDEILKKIATTAMTGKGAEVAIDKLAEIAVNAVKMIAEESNGQVEVNTDYIKIEKRQGGSIEETELVDGIVLDKEVVHPG---MPKRVENAKILLLDSALEVKETEIDAKIRITDPEKLQ 266
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 4.067e-39 Identity = 92/225 (40.89%), Postives = 142/225 (63.11%), Query Frame = 2 Query: 188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841 D S G+A N+ A ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A QD EVGDGTT+VV++AAE L+ A ++ +HP ++I +R A +A++ I E ++ + E + L+ A T++SSK+IG ++FA+MVVDAV A+ D +N + I K G + +S L+NG A G + PK+ Sbjct: 10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINE---NLIINADELGRDCLTNTAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPINSVNILKAHGRSQIESMLINGYALN---CVVGSQGMPKR 228
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 5.312e-39 Identity = 93/225 (41.33%), Postives = 141/225 (62.67%), Query Frame = 2 Query: 188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841 D S G+A N+ A ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A QD EVGDGTT+VV++AAE L+ A ++ +HP ++I +R A +A++ I E ++ + E + L A T++SSK+IG +FFA+MVVDAV A+ D +N + I K G + +S L+NG A G + PK+ Sbjct: 10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE---NLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDLRGQPRYPVNSVNILKAHGRSQVESMLINGYALN---CVVGSQGMPKR 228
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39 Identity = 95/266 (35.71%), Postives = 151/266 (56.77%), Query Frame = 2 Query: 146 AMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQ 934 A QP +++L E G+ NI A + + VRSTLGP+GMDK++ DD G + ++NDG TI+K + + HPAAK+L+++AK+Q+ EVGDGTTT V++A E LR+A+ ++ VHP +I+ ++ A KA + +KE+A ++ + K +L K A T+++ K KE M+V+AV A+ D ++I I+K G ++ ++ L+NGV K Q PKK AEIR++DP++ Sbjct: 2 AANQP-VVVLPENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIAMDVKA----DDKEILHKIAMTSITGKGAEKAKEKLGEMIVEAVTAVVDESGKVDKDLIKIEKKEGASVDETELINGVLIDKE---RVSPQMPKKIENAKIALLNCPIEVKETETDAEIRITDPTK 259
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39 Identity = 94/267 (35.21%), Postives = 152/267 (56.93%), Query Frame = 2 Query: 161 QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGDRL---NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943 Q+++L EG G+ NI A VA+ VR+TLGP GMDK++ D+ G V ++NDG TI++ +DI HPAAK++V++AK+Q+ EVGDGTTT V+LA E L +A+ ++ +HP + R +R A KA + ++E+A+ I+ + + L K A T ++ K + +++ A +VV AV + DG+ + + I ++K GG + D+ LV G+ K + G P++ AEIR++DP Q Q+ Sbjct: 10 QVLILPEGYQRFVGRDAQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAEEID----PDDEETLKKIAKTAMTGKGVEKARDYLAELVVKAVKQVAEEEDGEIVIDTDHIKLEKKEGGGLEDTELVKGMVIDKERVHPG---MPRRVENAKIALLNCPIEVKETETDAEIRITDPEQLQA 269
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39 Identity = 89/222 (40.09%), Postives = 142/222 (63.96%), Query Frame = 2 Query: 188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQ 832 + + G++ N+ A ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A QD EVGDGTT+VV++AAE L+ A ++ +HP ++I +R A +A++ I E ++ + E K L A T++SSK+IG + +FFA+MVVDAV A+ D +N I + K G + ++S L+NG A + G ++ Sbjct: 10 ERTTGESIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINE---NLIINTDELGKDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAVKYTDVKGQPRYPVNSINVLKAHGRSQKESMLINGYALNCVVASQGMPKR 228
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 6.938e-39 Identity = 93/225 (41.33%), Postives = 141/225 (62.67%), Query Frame = 2 Query: 188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841 D S G+A N+ A ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A QD EVGDGTT+VV++AAE L+ A ++ +HP ++I +R A +A++ I E ++ + E + L A T++SSK+IG +FFA++VVDAV AI D +N I + K G + +S L+NG A G + PK+ Sbjct: 10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE---NLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALN---CVVGSQGMPKR 228 The following BLAST results are available for this feature:
BLAST of FC878202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878202 ID=FC878202; Name=FC878202; organism=Citrus clementina; type=EST; length=944bpback to top |