FC878202

Overview
NameFC878202
Unique NameFC878202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_CUPTR (60 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 36/127 (28.35%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A++V  +N    +A+ V+ TLGP+G + ++    G  T++ DG ++ K +++     +  A+++ ++A       GDGTTT  +LA   +RE   F+  G++P +L R    A   A++++K+++K
Sbjct:   13 RAKMVEGVNI---LANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVGAAVEELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 48/168 (28.57%), Postives = 82/168 (48.81%), Query Frame = 2
Query:  242 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG-EKEFFASMVVDAVGAIGDGDRLNM 730
            ++  V++TLGP+G   ++    G+  I+NDG TI K +D+  P     A++  ++A   +   GDGTTT  +LA   +RE    +  G +P  L R    A     ++IK+L++ + G      KR +++ A  +   + IG    E    +  D V  + +G  L M
Sbjct:   23 LSKAVKATLGPKGRYVVLERKFGSPLITNDGVTIAKEIDLEDPYENLGAQLAKEVASKTNDVAGDGTTTATVLAEAMVREGMKNVTAGANPIALRRGIEKAVEAVTEEIKKLSRPVSG------KRDITEVATISAKDQQIGSIIAEAMEKVGKDGVVTVEEGKSLGM 184          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 35/127 (27.56%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A++V  +N    +A+ V+ TLGP+G + ++    G  T++ DG ++ K +++     +  A+++ ++A       GDGTTT  +LA   +RE   ++  G++P +L R    A   A++++K+++K
Sbjct:   13 RAKMVEGVNI---LANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BURMS (60 kDa chaperonin OS=Burkholderia mallei (strain SAVP1) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 35/127 (27.56%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A++V  +N    +A+ V+ TLGP+G + ++    G  T++ DG ++ K +++     +  A+++ ++A       GDGTTT  +LA   +RE   ++  G++P +L R    A   A++++K+++K
Sbjct:   13 RAKMVEGVNI---LANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BURMA (60 kDa chaperonin OS=Burkholderia mallei GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 35/127 (27.56%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A++V  +N    +A+ V+ TLGP+G + ++    G  T++ DG ++ K +++     +  A+++ ++A       GDGTTT  +LA   +RE   ++  G++P +L R    A   A++++K+++K
Sbjct:   13 RAKMVEGVNI---LANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BURM9 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10229) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 35/127 (27.56%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A++V  +N    +A+ V+ TLGP+G + ++    G  T++ DG ++ K +++     +  A+++ ++A       GDGTTT  +LA   +RE   ++  G++P +L R    A   A++++K+++K
Sbjct:   13 RAKMVEGVNI---LANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BURM7 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10247) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 35/127 (27.56%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A++V  +N    +A+ V+ TLGP+G + ++    G  T++ DG ++ K +++     +  A+++ ++A       GDGTTT  +LA   +RE   ++  G++P +L R    A   A++++K+++K
Sbjct:   13 RAKMVEGVNI---LANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BUCCM (60 kDa chaperonin OS=Buchnera aphidicola subsp. Chaetophorus leucomelas GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 53/221 (23.98%), Postives = 106/221 (47.96%), Query Frame = 2
Query:  194 SQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGT-MRDSF-LVNGVAFKKTFSYAGFEQQPK 838
            S+ +A+++  +N    +AD V+ TLGP+G + ++    G  +I+ DG ++ + +++     +  A+++ ++A   +   GDGTTT  LLA   + E    +  G++P +L R    A  KA++++K+L+               S   A T    +     E   S++ +A+  +G+       G+  V  GT + D   +V G+ F + +    F  +P+
Sbjct:   10 SEARAKMLRGVNI---LADAVKVTLGPKGRNVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDVAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDQAVIKAVKELKKLSVP------------CSDSKAITQVGTISANADETVGSLISEAMDKVGND------GVITVEEGTGLEDELDVVKGMQFDRGYLSPYFINKPE 209          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BORPE (60 kDa chaperonin OS=Bordetella pertussis GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 52/221 (23.53%), Postives = 105/221 (47.51%), Query Frame = 2
Query:  197 QGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFL--VNGVAFKKTFSYAGFEQQPKK 841
            + + ++V  +N    +A+ V++TLGP+G + ++    G  T++ DG ++ K +++        A+++ D+A       GDGTTT  +LA   ++E   ++  G +P +L R    A   A++++K+L+K +        K +    + +  S   IG        ++ DA+      D++   G+  V  G   ++ L  V G+ F + +    F   P+K
Sbjct:   11 EARVRIVRGVNV---LANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPV-----TTSKEIAQVGSISANSDASIG-------QIIADAM------DKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEK 210          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BORPA (60 kDa chaperonin OS=Bordetella parapertussis GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 52/221 (23.53%), Postives = 105/221 (47.51%), Query Frame = 2
Query:  197 QGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFL--VNGVAFKKTFSYAGFEQQPKK 841
            + + ++V  +N    +A+ V++TLGP+G + ++    G  T++ DG ++ K +++        A+++ D+A       GDGTTT  +LA   ++E   ++  G +P +L R    A   A++++K+L+K +        K +    + +  S   IG        ++ DA+      D++   G+  V  G   ++ L  V G+ F + +    F   P+K
Sbjct:   11 EARVRIVRGVNV---LANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPV-----TTSKEIAQVGSISANSDASIG-------QIIADAM------DKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEK 210          
The following BLAST results are available for this feature:
BLAST of FC878202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CUPTR1.233e-1128.3560 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH60_COPPD1.233e-1128.5760 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH60_BURTH1.233e-1127.5660 kDa chaperonin OS=Burkholderia thailandensis GN... [more]
CH60_BURMS1.233e-1127.5660 kDa chaperonin OS=Burkholderia mallei (strain S... [more]
CH60_BURMA1.233e-1127.5660 kDa chaperonin OS=Burkholderia mallei GN=groL P... [more]
CH60_BURM91.233e-1127.5660 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BURM71.233e-1127.5660 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BUCCM1.233e-1123.9860 kDa chaperonin OS=Buchnera aphidicola subsp. Ch... [more]
CH60_BORPE1.233e-1123.5360 kDa chaperonin OS=Bordetella pertussis GN=groL ... [more]
CH60_BORPA1.233e-1123.5360 kDa chaperonin OS=Bordetella parapertussis GN=g... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878202 ID=FC878202; Name=FC878202; organism=Citrus clementina; type=EST; length=944bp
AATCACTAGAAACAACTAGTCACTGCGCAGTACACACTTGGGATCTCGTC
AGTGTTATTGAACTTGAGTAAGGGGTAAAAAAAAAAAAATCAAACCCTAG
CGTTCTCTCATAAACTTCATTTCGATTTCAATCTCAACAATGGCAGCCAT
GATGCAGCCGCAGATCATTTTATTGAAAGAAGGAACCGACACGTCGCAAG
GAAAGGCTCAGTTGGTGAGCAACATAAACGCGTGCACGGCGGTGGCTGAT
GTGGTGAGGTCGACGCTGGGCCCCAGAGGGATGGACAAGTTGATACACGA
CGACAAGGGCACCGTTACCATCTCTAACGACGGCGCCACCATCATGAAGC
TTCTCGACATCGTCCATCCCGCCGCCAAGATTCTCGTTGACATCGCCAAG
TCTCAGGACTCTGAAGTCGGCGACGGTACCACCACTGTGGTTCTGCTTGC
GGCCGAGTTCTTGAGGGAGGCCAAGCCTTTTATTGAGGATGGAGTTCACC
CTCAGAATTTGATTAGGAGTTTTCGCAACGCCAGCTATAAGGCGATTCAG
AAGATCAAGGAATTGGCTAAAAGCATAGAGGGTCAAAGTTTAGAAGAGAA
GAAAAGACTATTGTCAAAATGTGCTGCCACTACGCTTTCTTCTAAACTTA
TTGGTGGTGAAAAAGAGTTTTTTGCTTCAATGGTTGTAGATGCTGTTGGT
GCAATTGGCGATGGTGATAGGTTGAATATGATTGGAATCAAGAAGGTTCC
AGGTGGTACCATGCGGGATTCCTTTCTAGTAAATGGTGTTGCTTTTAAGA
AGACATTTTCGTATGCAGGCTTTGAACAGCAACCTAAGAAGTTTTTAAAC
CCAAAGATACTCTTATTGAACATTGAGTTGGAACTGAAATCTGAGAAAGA
AAATGCTGAGATAAGACTTTCAGATCCATCACAGTATCAATCAA
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