FC878202

Overview
NameFC878202
Unique NameFC878202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BEUC1 (60 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  242 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIE 580
            +AD V+ TLGP+G + ++    G  TI+NDG +I K +++  P     A+++ ++AK  D   GDGTTT  +LA   +RE    +  G +P  L +    A       + E AK +E
Sbjct:   22 LADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEEPFEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPIALKKGIDKAVEAVTAALLEQAKEVE 138          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_BDEBA (60 kDa chaperonin OS=Bdellovibrio bacteriovorus GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 37/139 (26.62%), Postives = 74/139 (53.24%), Query Frame = 2
Query:  185 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQS 589
            T +   +  ++  +N    +A+ V+ TLGP+G + +I    G+  I+ DG T+ K +++ +      A+++ ++A   + E GDGTTT  +LA    RE    +  G +P ++ R    A    I+++K ++K ++G +
Sbjct:    6 TFSEDARTHILKGVNT---LANAVKVTLGPKGRNVVIDKSFGSPLITKDGVTVAKEIELENKFENMGAQMVKEVASKTNDEAGDGTTTATVLAQAIYREGAKLVSAGHNPMSIKRGIDKAVGIIIEELKSMSKPVKGSN 141          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_ACHLI (60 kDa chaperonin OS=Acholeplasma laidlawii (strain PG-8A) GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 44/157 (28.03%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  200 GKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHP----QNLIRSFRNASYKAIQKIK--ELAKSIEG-QSLEEKKRLLSKCAATTL 637
            GK    S +     +A+ V+ TLGP+G + ++    G+  I+NDG +I K +++  P     AK+L ++A   +   GDGTTT  LLA   + +    +++G +P    + ++R+ +  S K ++K +  E ++ IE   S+    R + K  A  +
Sbjct:    8 GKDAKQSLLKGVDLLANTVKITLGPKGRNVVLDKGYGSPLITNDGVSIAKEIELKDPYENMGAKLLYEVASKTNDVAGDGTTTATLLAQSIIHKGFKAVDNGANPVLVREGILRAGKEVSQKLLEKSRPVETSEDIENVASISASSREIGKIIAEAM 164          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH604_BURXL (60 kDa chaperonin 4 OS=Burkholderia xenovorans (strain LB400) GN=groL4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 37/136 (27.21%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  176 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLD----IVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            KE   +   +++LV  +N    +A+ V+ TLGP+G + ++    G+  ++ DG ++ K ++    + +  A+++ ++A       GDGTTT  +LA   +RE + ++  G++P +L R    A   AI+++K+++K
Sbjct:    4 KEIIFSDVARSRLVEGVNI---LANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELSDRVQNIGAQLVKEVASRTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVIAAIEELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH602_MYXXD (60 kDa chaperonin 2 OS=Myxococcus xanthus (strain DK 1622) GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 52/205 (25.37%), Postives = 99/205 (48.29%), Query Frame = 2
Query:  242 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPG-GTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            +AD V+ TLGP+G + +I    G+ TI+ DG T+ K +++ +      A+++ ++A       GDGTTT  +LA    RE    +  G +P ++ R    A    + ++K+LAK       ++KK +      +    + IG       +++ DA+  +G   +  +I +++  G  T  D  +V G+ F + +    F   P++
Sbjct:   22 LADAVKVTLGPKGRNVVIEKSFGSPTITKDGVTVAKEIELENKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQAIFREGAKLVAAGHNPMDIKRGIDKAVGAIVAELKKLAK-----PTKDKKEIAQVGTISANGDETIG-------TIIADAMEKVG---KEGVITVEEAKGLETTLD--VVEGMQFDRGYLSPYFVTDPER 209          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH602_BURPS (60 kDa chaperonin 2 OS=Burkholderia pseudomallei GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 35/127 (27.56%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A+LV  +N    +A+ V+ TLGP+G + ++    G+  ++ DG ++ K +++        A+++ ++A       GDGTTT  +LA   +RE + ++  G++P +L R    A   A+ ++K+++K
Sbjct:   13 RAKLVEGVNL---LANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH602_BURP6 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 668) GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 35/127 (27.56%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A+LV  +N    +A+ V+ TLGP+G + ++    G+  ++ DG ++ K +++        A+++ ++A       GDGTTT  +LA   +RE + ++  G++P +L R    A   A+ ++K+++K
Sbjct:   13 RAKLVEGVNL---LANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH602_BURP1 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 1710b) GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 35/127 (27.56%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A+LV  +N    +A+ V+ TLGP+G + ++    G+  ++ DG ++ K +++        A+++ ++A       GDGTTT  +LA   +RE + ++  G++P +L R    A   A+ ++K+++K
Sbjct:   13 RAKLVEGVNL---LANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH602_BURP0 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 1106a) GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 35/127 (27.56%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  203 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAK 571
            +A+LV  +N    +A+ V+ TLGP+G + ++    G+  ++ DG ++ K +++        A+++ ++A       GDGTTT  +LA   +RE + ++  G++P +L R    A   A+ ++K+++K
Sbjct:   13 RAKLVEGVNL---LANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISK 136          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: CH60_SYNWW (60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.686e-11
Identity = 44/160 (27.50%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  242 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG 709
            +A+ V+ TLGP+G + ++    G+ TI+NDG TI + +D+  P      +++ ++A   +   GDGTTT  LLA   ++E    +  G +P  + R    A    + +IK L+K +E +        +++ AA +     IG        ++ DA+  +G
Sbjct:   23 LANAVKVTLGPKGRNVVLDRKFGSPTITNDGVTIARDIDLKDPWENLGCQLVKEVAIKTNDVAGDGTTTATLLAQAMIKEGLKNVAAGANPMIMRRGIDQAVKAVVDEIKTLSKPVESRD------SIAQVAAISADDPEIG-------QLIADAMEKVG 169          
The following BLAST results are available for this feature:
BLAST of FC878202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BEUC13.588e-1133.3360 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH60_BDEBA3.588e-1126.6260 kDa chaperonin OS=Bdellovibrio bacteriovorus GN... [more]
CH60_ACHLI3.588e-1128.0360 kDa chaperonin OS=Acholeplasma laidlawii (strai... [more]
CH604_BURXL3.588e-1127.2160 kDa chaperonin 4 OS=Burkholderia xenovorans (st... [more]
CH602_MYXXD3.588e-1125.3760 kDa chaperonin 2 OS=Myxococcus xanthus (strain ... [more]
CH602_BURPS3.588e-1127.5660 kDa chaperonin 2 OS=Burkholderia pseudomallei G... [more]
CH602_BURP63.588e-1127.5660 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH602_BURP13.588e-1127.5660 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH602_BURP03.588e-1127.5660 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH60_SYNWW4.686e-1127.5060 kDa chaperonin OS=Syntrophomonas wolfei subsp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA55AC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878202 ID=FC878202; Name=FC878202; organism=Citrus clementina; type=EST; length=944bp
AATCACTAGAAACAACTAGTCACTGCGCAGTACACACTTGGGATCTCGTC
AGTGTTATTGAACTTGAGTAAGGGGTAAAAAAAAAAAAATCAAACCCTAG
CGTTCTCTCATAAACTTCATTTCGATTTCAATCTCAACAATGGCAGCCAT
GATGCAGCCGCAGATCATTTTATTGAAAGAAGGAACCGACACGTCGCAAG
GAAAGGCTCAGTTGGTGAGCAACATAAACGCGTGCACGGCGGTGGCTGAT
GTGGTGAGGTCGACGCTGGGCCCCAGAGGGATGGACAAGTTGATACACGA
CGACAAGGGCACCGTTACCATCTCTAACGACGGCGCCACCATCATGAAGC
TTCTCGACATCGTCCATCCCGCCGCCAAGATTCTCGTTGACATCGCCAAG
TCTCAGGACTCTGAAGTCGGCGACGGTACCACCACTGTGGTTCTGCTTGC
GGCCGAGTTCTTGAGGGAGGCCAAGCCTTTTATTGAGGATGGAGTTCACC
CTCAGAATTTGATTAGGAGTTTTCGCAACGCCAGCTATAAGGCGATTCAG
AAGATCAAGGAATTGGCTAAAAGCATAGAGGGTCAAAGTTTAGAAGAGAA
GAAAAGACTATTGTCAAAATGTGCTGCCACTACGCTTTCTTCTAAACTTA
TTGGTGGTGAAAAAGAGTTTTTTGCTTCAATGGTTGTAGATGCTGTTGGT
GCAATTGGCGATGGTGATAGGTTGAATATGATTGGAATCAAGAAGGTTCC
AGGTGGTACCATGCGGGATTCCTTTCTAGTAAATGGTGTTGCTTTTAAGA
AGACATTTTCGTATGCAGGCTTTGAACAGCAACCTAAGAAGTTTTTAAAC
CCAAAGATACTCTTATTGAACATTGAGTTGGAACTGAAATCTGAGAAAGA
AAATGCTGAGATAAGACTTTCAGATCCATCACAGTATCAATCAA
back to top