FC878202

Overview
NameFC878202
Unique NameFC878202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.873e-38
Identity = 85/205 (41.46%), Postives = 134/205 (65.37%), Query Frame = 2
Query:  221 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVAFKKTFS 811
            N+ A TA+A+VV+S+LGP G+DK++ DD G VT++NDGATI+ LLD+ HPA K+LV++A+ QD EVGDGTT+VV++AAE LR A   +++ +HP  +I  +R A  +A++ + + L+ S++       K  L   A T++SSK+IG + +FF++M VDA+ ++   +        +  + I K  G + R+S LV G A   T +
Sbjct:   26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLG----KESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKGYALNCTIA 226          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.670e-38
Identity = 93/225 (41.33%), Postives = 140/225 (62.22%), Query Frame = 2
Query:  188 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            D S G+A    N+ A  ++A++V+S+LGP G+DK++ DD G VTI+NDGATI+KLL++ HPAAK+L ++A  QD EVGDGTT+VV++AAE L+ A    +  +HP ++I  +R A  +A++ I E   ++   + E  +  L   A T++SSK+IG   +FFA+MVVDAV AI   D        +N + I K  G +  +S L++G A        G +  PK+
Sbjct:   10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYINE---NLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDTRGQPRYPVNSVNILKAHGRSQMESKLISGYALN---CVVGSQGMPKR 228          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.232e-37
Identity = 90/225 (40.00%), Postives = 136/225 (60.44%), Query Frame = 2
Query:  164 IILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAG 820
            I +LKEGT    GK  +  NI A  A+++ VRS+LGPRGMDK++ D  G + I+NDG TI+K +D+ HPAAK++V+++K+QDS VGDGTTT V++A   L++A+  I   VHP  +   +R AS +A + I E++  I      ++K LL K A T+L+SK     K+  A +  +AV ++    DG      + I + K  GG + D+ L+NG+   K   + G
Sbjct:    7 IFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGA----DEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPG 227          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 4.972e-37
Identity = 92/245 (37.55%), Postives = 145/245 (59.18%), Query Frame = 2
Query:  119 ISISISTMAAMMQPQIILLKEGTDTSQ-GKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR----LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPK 838
            +S +I     M +P II+  +G    Q G     S+I A  +VA +++++LGPRG+DK++    G +TI+NDGATI+  +++ +  AK+LV ++KSQD E+GDGTT VV+LA+  L +A   I+ G+HP  +   F  A+  AI K++E    I   + E  +  L + A T+L SK++  + + FA M V+AV  + D DR     ++I ++   GG++ DS L+NGV   K FS+    Q PK
Sbjct:   15 LSNAIVAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSH---PQMPK 256          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.493e-37
Identity = 86/203 (42.36%), Postives = 131/203 (64.53%), Query Frame = 2
Query:  221 NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR-------LNMIGIKKVPGGTMRDSFLVNGVAFKKT 805
            N+ A  AVA+VV+S+LGP G+DK++ DD G  T++NDGATI+ LLD+ HPA KILV++A+ QD E+GDGTT+VV++A+E L+ A   +++ +HP  +I  FR A  +AI+ I E L+ S++       K  L   A T++SSK+IG + +FF++MVVDA+ A+   +        +  + + K  G +  +S LV G A   T
Sbjct:   29 NVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLG----KETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCT 227          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.493e-37
Identity = 87/219 (39.73%), Postives = 135/219 (61.64%), Query Frame = 2
Query:  167 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR------LNMIGIKKVPGGTMRDSFLVNGVAFKKT 805
            IL   G  T+ G+     N+ A  A+A++V+S+LGP G+DK++ DD G V ++NDGATI+K L++ HPA K+LV++A+ QD EVGDGTT+VV++AAE L+ A   ++  VHP  +I  +R A  +A++ I E   +I   S    ++ +   A T++SSK+IG + +FF  +VVDA  A+   +       +N + + K  G + R+S LV G A   T
Sbjct:    8 ILALTGKRTT-GQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISE---NISFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAVRVENNGKVTYPINAVNVLKAHGKSARESVLVKGYALNCT 222          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 8.481e-37
Identity = 87/216 (40.28%), Postives = 135/216 (62.50%), Query Frame = 2
Query:  170 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLI----HDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIE-GQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKK 802
            +LK+     +G++  +S+     A+ D+V+STLGP+GMDK++     +  G + ++NDGATI+K + + +PAAK+LVD++ +QD EVGDGTT+V +LAAE L+EA+  +   +HPQ +I  +R A   A + +K+   SIE G ++ +    L K A TTL SK++   KE FA + VDAV  +     L+ I I K  GG+M +S+L  G   +K
Sbjct:    6 ILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKK--SSIESGDNIRDD---LLKIARTTLGSKILSQHKEHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSMNESYLDEGFLLEK 216          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.108e-36
Identity = 92/274 (33.58%), Postives = 148/274 (54.01%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943
            MA +    +++L EGT    G+     NI A   +A+ VR+TLGP+GMDK++ D  G + ++NDGATI+  +D+ HPAAK++V++AK+QD E GDGTTT V++A E LR+A+  ++  +HP  +I+ +  A+ KA + + E+A  ++     + +  L K AAT+++ K     KE  A + V+AV  +    DG     L+ I  +K  G  + +S LV GV   K   +    + PK+                     A+I ++ P Q  S
Sbjct:    1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD----PDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVH---PRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMS 267          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.108e-36
Identity = 92/274 (33.58%), Postives = 148/274 (54.01%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943
            MA +    +++L EGT    G+     NI A   +A+ VR+TLGP+GMDK++ D  G + ++NDGATI+  +D+ HPAAK++V++AK+QD E GDGTTT V++A E LR+A+  ++  +HP  +I+ +  A+ KA + + E+A  ++     + +  L K AAT+++ K     KE  A + V+AV  +    DG     L+ I  +K  G  + +S LV GV   K   +    + PK+                     A+I ++ P Q  S
Sbjct:    1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD----PDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVH---PRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMS 267          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.467e-36
Identity = 91/274 (33.21%), Postives = 147/274 (53.65%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG---DGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943
            MA +    +++L EGT    G+     NI A   +A+ VR+TLGP+GMDK++ D  G + ++NDGATI+  +D+ HPAAK++V++AK+QD E GDGTTT V++A E LR+A+  ++  +HP  +I+ +  A+ KA + ++E+A  +      + +  L + A T+++ K     KE  A + VDAV  +    DG     L+ I  +K  G  + +S LV GV   K   +    + PK+                     A+I ++ P Q  S
Sbjct:    1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIKVN----PDDEETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVH---PRMPKRVEGAKIALINEALEVKKTETDAKINITSPDQLMS 267          
The following BLAST results are available for this feature:
BLAST of FC878202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPA_SCHPO5.873e-3841.46T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_MACFA7.670e-3841.33T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
THSB_THEAC2.232e-3740.00Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
TCPE_YEAST4.972e-3737.55T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPA_YEAST6.493e-3742.36T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_CAEEL6.493e-3739.73T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPB_CAEEL8.481e-3740.28T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
THSA_THEK11.108e-3633.58Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO1.108e-3633.58Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSA_THEK82.467e-3633.21Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878202 ID=FC878202; Name=FC878202; organism=Citrus clementina; type=EST; length=944bp
AATCACTAGAAACAACTAGTCACTGCGCAGTACACACTTGGGATCTCGTC
AGTGTTATTGAACTTGAGTAAGGGGTAAAAAAAAAAAAATCAAACCCTAG
CGTTCTCTCATAAACTTCATTTCGATTTCAATCTCAACAATGGCAGCCAT
GATGCAGCCGCAGATCATTTTATTGAAAGAAGGAACCGACACGTCGCAAG
GAAAGGCTCAGTTGGTGAGCAACATAAACGCGTGCACGGCGGTGGCTGAT
GTGGTGAGGTCGACGCTGGGCCCCAGAGGGATGGACAAGTTGATACACGA
CGACAAGGGCACCGTTACCATCTCTAACGACGGCGCCACCATCATGAAGC
TTCTCGACATCGTCCATCCCGCCGCCAAGATTCTCGTTGACATCGCCAAG
TCTCAGGACTCTGAAGTCGGCGACGGTACCACCACTGTGGTTCTGCTTGC
GGCCGAGTTCTTGAGGGAGGCCAAGCCTTTTATTGAGGATGGAGTTCACC
CTCAGAATTTGATTAGGAGTTTTCGCAACGCCAGCTATAAGGCGATTCAG
AAGATCAAGGAATTGGCTAAAAGCATAGAGGGTCAAAGTTTAGAAGAGAA
GAAAAGACTATTGTCAAAATGTGCTGCCACTACGCTTTCTTCTAAACTTA
TTGGTGGTGAAAAAGAGTTTTTTGCTTCAATGGTTGTAGATGCTGTTGGT
GCAATTGGCGATGGTGATAGGTTGAATATGATTGGAATCAAGAAGGTTCC
AGGTGGTACCATGCGGGATTCCTTTCTAGTAAATGGTGTTGCTTTTAAGA
AGACATTTTCGTATGCAGGCTTTGAACAGCAACCTAAGAAGTTTTTAAAC
CCAAAGATACTCTTATTGAACATTGAGTTGGAACTGAAATCTGAGAAAGA
AAATGCTGAGATAAGACTTTCAGATCCATCACAGTATCAATCAA
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