FC878202

Overview
NameFC878202
Unique NameFC878202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.225e-35
Identity = 90/237 (37.97%), Postives = 139/237 (58.65%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRL-LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            MA++    + + K G D  + +   +++     A+ D+V+STLGP+GMDK++       ++ ++NDGATI+K + + +PAAK+LVD+++ QD EVGDGTT+V +LAAE LREA+  I   +HPQ +I  +R A+  A + +  L+ +++  S E K R  L   A TTLSSKL+   K+ F  + V+AV  +     L  I I K  GG++ DS+L  G    K         QPK+
Sbjct:    1 MASLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGV----NQPKR 231          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 1.225e-35
Identity = 90/237 (37.97%), Postives = 139/237 (58.65%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRL-LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            MA++    + + K G D  + +   +++     A+ D+V+STLGP+GMDK++       ++ ++NDGATI+K + + +PAAK+LVD+++ QD EVGDGTT+V +LAAE LREA+  I   +HPQ +I  +R A+  A + +  L+ +++  S E K R  L   A TTLSSKL+   K+ F  + V+AV  +     L  I I K  GG++ DS+L  G    K         QPK+
Sbjct:    1 MASLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGV----NQPKR 231          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.089e-35
Identity = 89/234 (38.03%), Postives = 140/234 (59.83%), Query Frame = 2
Query:  155 QPQIILLK-EGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD----RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            QP I++ + E      G   + S+I A  AVA+ +R++LGPRG+DK++    G VTI+NDGATIM+ +D+ H  AK++V+++KSQD E+GDGTT VV+LA   L EA+  I+ G+HP  +   F  A  KA++ +  ++       +E ++RL+ + A T+L SK++      FA + VDAV ++ D +       MI ++   GG + D+ LV G+   KT S+    Q PK+
Sbjct:   15 QPFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKF---PVENRERLV-ETAQTSLGSKIVNRSLRQFAEIAVDAVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSH---PQMPKE 241          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.728e-35
Identity = 96/266 (36.09%), Postives = 146/266 (54.89%), Query Frame = 2
Query:  170 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAI-------GDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXXXXXAEIRLSDPSQYQS 943
            +L  G + + G++    N+ A  + A+ V+++LGP G+DK++ DD G VTI+NDGATI+KLLD+ HPAAKILV +A+ QD EVGDGTT+VV+LAA  L+ A   I   VHP  +I  +R A  +A + I+E +A  +     +  K  L   A T +SSKLI  + + F+ M VDA+ A+       G    +  + I K  G +M +S L++G A   T   A  +Q P+                       ++ + DP+Q ++
Sbjct:    1 MLTLGGERTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQEHMAYDVN----KLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAVEVSGGPKGPVYPIKAVNILKAHGRSMSESMLIDGYALNCT---AASQQMPRIIKKAKIAFLDFSLQKVKMKLGVQVVVKDPAQLEA 259          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.563e-35
Identity = 82/212 (38.68%), Postives = 133/212 (62.74%), Query Frame = 2
Query:  218 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGD-----GDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPK 838
            SNI+A  AVAD +R++LGP+GMDK+I D KG VTI+NDGATI+K + ++HPAA++LV+++K+QD E GDGTT+VV++A   L      ++ G+HP  +  SF+ A  K ++ + ++++ ++   L +++ LL+  A T+L+SK++       + M V+AV  + D        L  I I K  GGT+ D  LV G+   +  + +G  +  K
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ---LSDRETLLNS-ATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEK 243          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.563e-35
Identity = 82/212 (38.68%), Postives = 133/212 (62.74%), Query Frame = 2
Query:  218 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGD-----GDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPK 838
            SNI+A  AVAD +R++LGP+GMDK+I D KG VTI+NDGATI+K + ++HPAA++LV+++K+QD E GDGTT+VV++A   L      ++ G+HP  +  SF+ A  K ++ + ++++ ++   L +++ LL+  A T+L+SK++       + M V+AV  + D        L  I I K  GGT+ D  LV G+   +  + +G  +  K
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ---LSDRETLLNS-ATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEK 243          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.563e-35
Identity = 89/237 (37.55%), Postives = 139/237 (58.65%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEK-KRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            MA++    + + K G D  + +   +S+     A+ D+V+STLGP+GMDK++       ++ ++NDGATI+K + + +PAAK+LVD+++ QD EVGDGTT+V +LAAE LREA+  I   +HPQ +I  +R A+  A + +  L+ +++  S E K  + L   A TTLSSKL+   K+ F  + V+AV  +     L  I + K  GG++ DS+L  G    K         QPK+
Sbjct:    1 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKR 231          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.653e-35
Identity = 80/195 (41.03%), Postives = 127/195 (65.13%), Query Frame = 2
Query:  218 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR----LNMIGIKKVPGGTMRDSFLVNGV 790
            +NI A  AVAD +R++LGP+GMDK+I   +G + ISNDG TI+K + I+HP AK+LV+++ +QD E GDGTT+VV++    L  A+  +  G+HP  +  SF+ A+ ++++ +  ++  I   SL++K+ L+ + A+T+LSSK++     F A + VD V +I   D     LN I + K  GGT+ D+ +VNGV
Sbjct:   25 ANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTKI---SLDDKEALV-RAASTSLSSKIVSQHSSFLAPLAVDCVLSIASHDSTNVDLNDIRLIKKVGGTIDDTEMVNGV 215          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.938e-35
Identity = 82/195 (42.05%), Postives = 122/195 (62.56%), Query Frame = 2
Query:  218 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD-----RLNMIGIKKVPGGTMRDSFLVNG 787
            SNI A  AVAD VR++LGPRGMDK+I    G VTI+NDGATI+  + ++HP AK+LV+++K+QD E GDGTTTVV++A   L  A+  +  G+HP  +  SF++A+ +A + + E++  ++         LL+K A T+L+SK++       A M V+AV  I + +      L MI I K  G T+ +S L+ G
Sbjct:   35 SNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVD----LSNDALLNKMATTSLNSKVVSQHSWLLAPMAVNAVKKIINSENDSNVNLKMIKIIKKMGDTVEESELIEG 225          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 147.902 bits (372), Expect = 7.938e-35
Identity = 88/237 (37.13%), Postives = 138/237 (58.23%), Query Frame = 2
Query:  140 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEK-KRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            MA++    + + K G D  + +   +S+     A+ D+V+STLGP+GMDK++        + ++NDGATI+K + + +PAAK+LVD+++ QD EVGDGTT+V +LAAE LREA+  I   +HPQ +I  +R A+  A + +  L+ +++  S E +  + L   A TTLSSKL+   K+ F  + V+AV  +     L  I + K  GG++ DS+L  G    K         QPK+
Sbjct:    1 MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV----NQPKR 231          
The following BLAST results are available for this feature:
BLAST of FC878202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPB_MACFA1.225e-3537.97T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN1.225e-3537.97T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPE_CAEEL2.089e-3538.03T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPA_SCHMA2.728e-3536.09T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPD_RAT3.563e-3538.68T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE3.563e-3538.68T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPB_RAT3.563e-3537.55T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPD_KLULA4.653e-3541.03T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
TCPD_CAEEL7.938e-3542.05T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPB_MOUSE7.938e-3537.13T-complex protein 1 subunit beta OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878202 ID=FC878202; Name=FC878202; organism=Citrus clementina; type=EST; length=944bp
AATCACTAGAAACAACTAGTCACTGCGCAGTACACACTTGGGATCTCGTC
AGTGTTATTGAACTTGAGTAAGGGGTAAAAAAAAAAAAATCAAACCCTAG
CGTTCTCTCATAAACTTCATTTCGATTTCAATCTCAACAATGGCAGCCAT
GATGCAGCCGCAGATCATTTTATTGAAAGAAGGAACCGACACGTCGCAAG
GAAAGGCTCAGTTGGTGAGCAACATAAACGCGTGCACGGCGGTGGCTGAT
GTGGTGAGGTCGACGCTGGGCCCCAGAGGGATGGACAAGTTGATACACGA
CGACAAGGGCACCGTTACCATCTCTAACGACGGCGCCACCATCATGAAGC
TTCTCGACATCGTCCATCCCGCCGCCAAGATTCTCGTTGACATCGCCAAG
TCTCAGGACTCTGAAGTCGGCGACGGTACCACCACTGTGGTTCTGCTTGC
GGCCGAGTTCTTGAGGGAGGCCAAGCCTTTTATTGAGGATGGAGTTCACC
CTCAGAATTTGATTAGGAGTTTTCGCAACGCCAGCTATAAGGCGATTCAG
AAGATCAAGGAATTGGCTAAAAGCATAGAGGGTCAAAGTTTAGAAGAGAA
GAAAAGACTATTGTCAAAATGTGCTGCCACTACGCTTTCTTCTAAACTTA
TTGGTGGTGAAAAAGAGTTTTTTGCTTCAATGGTTGTAGATGCTGTTGGT
GCAATTGGCGATGGTGATAGGTTGAATATGATTGGAATCAAGAAGGTTCC
AGGTGGTACCATGCGGGATTCCTTTCTAGTAAATGGTGTTGCTTTTAAGA
AGACATTTTCGTATGCAGGCTTTGAACAGCAACCTAAGAAGTTTTTAAAC
CCAAAGATACTCTTATTGAACATTGAGTTGGAACTGAAATCTGAGAAAGA
AAATGCTGAGATAAGACTTTCAGATCCATCACAGTATCAATCAA
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