FC878202

Overview
NameFC878202
Unique NameFC878202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.037e-34
Identity = 78/200 (39.00%), Postives = 131/200 (65.50%), Query Frame = 2
Query:  218 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR----LNMIGIKKVPGGTMRDSFLVNGVAFKKT 805
            +NI A  +VAD +R++LGP+GMDK+I   +G + ISNDG TI+K + I+HP A++LV+++ +QDSE GDGTT+VV+L    L  A+  +  G+HP  +  SF++A+ +++  + E+   +   SL ++++L+ + A+T+LSSK++     F A + VD+V  I D +     LN I + K  GGT+ D+ +++GV   +T
Sbjct:   23 ANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKV---SLSDREQLV-RAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQT 218          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.037e-34
Identity = 83/196 (42.35%), Postives = 127/196 (64.80%), Query Frame = 2
Query:  218 SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGD-----GDRLNMIGIKKVPGGTMRDSFLVNGV 790
            SNI+A  AVAD VR++LGP+GMDK+I D+KG VTI+NDGATI+K + ++HP+AK+LV+++K+QD E GDGTT+VV++A   L      ++ G+HP  +  SF+ A  K ++ +  +++ ++   L +++ LL+  A T+L SK++       A M VDAV  + D        L+ I I K  GGT+ D  LV G+
Sbjct:   33 SNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQ---LGDRETLLNS-ATTSLCSKVVSQYSSLLAPMSVDAVMRVIDPATATSVDLHDIKIIKKLGGTIDDCELVEGL 224          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.768e-34
Identity = 86/223 (38.57%), Postives = 131/223 (58.74%), Query Frame = 2
Query:  155 QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAI----GDGDR---LNMIGIKKVPGGTMRDSFLVNGVAFKK 802
            QP II+ ++        AQ   NI A  AVA+ VRSTLGP+GMDK++ D  G VTI+NDG TI+K +DI +P A+++V++A++Q+ E GDGTTT V +A E L+ A+  +E  +HP  +IR F  AS KA ++I ++A+ ++     + + LL K A T+++ K     KE  A ++V AV  +     DG     L  + I+   G +  +S L+ G    K
Sbjct:    9 QPMIIMGEDAQRVKDRDAQEY-NIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERVD----PDDEELLKKVAETSMTGKSSELNKELLADLIVRAVRQVTVEANDGSHVVDLENVSIETQTGRSASESELLTGAVIDK 226          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.309e-34
Identity = 89/221 (40.27%), Postives = 131/221 (59.28%), Query Frame = 2
Query:  185 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHD-DKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDG-VHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            T+     A+L + + A  AV D+V+STLGP+GMDKL+      T  ++NDGATI+K + + +PAAK+LV+I+K QD EVGDGTT+V +L+AE LREA+  I+   +HPQ +I  +R AS  A+  + + A          ++ L+   A TTLSSK++  +K+ FA +  +A+  +     L  I I K+ GG + DSFL  G    K F       QPK+
Sbjct:   11 TEERAENARLSAFVGAI-AVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLI-HIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFG----NNQPKR 225          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.939e-34
Identity = 85/202 (42.08%), Postives = 128/202 (63.37%), Query Frame = 2
Query:  215 VSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGD-----GDRLNMIGIKKVPGGTMRDSFLVNGVAFKKT 805
            +SNI A  +VAD +R++LGP+GMDK+I   KG V ++NDGATI+K L ++HPAAK+LVD++ +QD E GDGTT+VV+LA   L  A+  ++ G+HP  +  SF+ A+   +  +KE A +IE   L +++ LL + A T+L+SK++       A + VDAV  + D        L  I I K  GG + D+ L+ G+A  +T
Sbjct:   22 LSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE---LSDRESLL-RAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVKKLGGIIDDTELIPGLALTQT 219          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.939e-34
Identity = 85/217 (39.17%), Postives = 134/217 (61.75%), Query Frame = 2
Query:  158 PQIILLKEGTDTSQGKAQLV--SNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAI----GDGDRLNMIGIKKVPGGTMRDSFLVNGV 790
            P  +     T  ++ K Q V  +NI A  AVAD +R++LGP+GMDK+I   +G + ISNDG TI+K + I+HP AK+LV+++ +QDSE GDGTT+VV+L    L  A+  +  G+HP  +  SF+ A  +A++ +  ++K I   SL+++  L+ + A+T+LSSK++     F A + VD V ++         LN I + K  GGT+ D+ +V+GV
Sbjct:    2 PPKVSASNATFKNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGMSKRI---SLQDRAELV-RAASTSLSSKIVSQYSTFLAPLAVDCVLSLTNEASTNVDLNDIRLVKKVGGTIDDTEMVDGV 214          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.939e-34
Identity = 87/227 (38.33%), Postives = 131/227 (57.71%), Query Frame = 2
Query:  182 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIG--DGDRLNM-----IGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            G ++  G + +  N  A   V + ++++ GP G+DK+  D  G V+I+NDGATI++ + I  PAAKILVD+A  QD EVGDGTT+VVL+A   + +    I  GVHP  ++  ++ A  + +Q IK   KS+   +L    + L     T++SSK+I  E E F  +V+DA+  I   D +R NM     I I K PGG+M++SFL  G A   + +    ++Q KK
Sbjct:   13 GGESYSGISAVEKNAKAMMKVYNAIKTSFGPLGLDKMCVDSAGEVSITNDGATILQNMLIDDPAAKILVDLATQQDHEVGDGTTSVVLIAVSLIEKGAKLIASGVHPSVVVSGYKMAFNECVQFIK---KSMSKSTLNLGSKALRNVVETSISSKVISSESEVFCGIVIDALKCIESVDENRKNMYPIEDINILKHPGGSMKESFLHQGYALNCSLASNFMKRQVKK 236          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.776e-34
Identity = 81/218 (37.16%), Postives = 131/218 (60.09%), Query Frame = 2
Query:  200 GKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR----LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            G   L S+I A  AVA+ +R++LGP G+DK++ D  G VT++NDGATI+ ++D+ H  AK++V+++KSQD E+GDGTT VV+LA   L EA+  ++ G+HP  +   +  A+  AI+ + +++ S+     + +   L + A TTL SK++       A + V+AV  + D +R      +I ++   GG + D+ L+ GV   K FS+    Q PKK
Sbjct:   30 GLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEP--LIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKK 242          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.776e-34
Identity = 81/218 (37.16%), Postives = 131/218 (60.09%), Query Frame = 2
Query:  200 GKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR----LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 841
            G   L S+I A  AVA+ +R++LGP G+DK++ D  G VT++NDGATI+ ++D+ H  AK++V+++KSQD E+GDGTT VV+LA   L EA+  ++ G+HP  +   +  A+  AI+ + +++ S+     + +   L + A TTL SK++       A + V+AV  + D +R      +I ++   GG + D+ L+ GV   K FS+    Q PKK
Sbjct:   30 GLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEP--LIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSH---PQMPKK 242          
BLAST of FC878202 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.497e-33
Identity = 73/233 (31.33%), Postives = 139/233 (59.66%), Query Frame = 2
Query:  164 IILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKIKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVD-AVGAI-----GDGDRLNM-----IGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQ 829
            + +L +     QG+    +NI A  AV+D+VR+TLGP+ M K++ D  G + ++NDG  I++ +D+ HPAAK ++++A++QD EVGDGTT+V++LA E L   + F+E  +HP  ++ ++  A  + ++  +   + I+ ++  + ++++S C  T  SSK        + +++VD AV A+      +GD + +       ++K+PGG + +S +++GV F K  ++ G  +
Sbjct:    7 VFILNQNAKREQGRKAQTANIKAARAVSDIVRTTLGPKSMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELARAQDEEVGDGTTSVIILAGEILSAVESFLERDIHPTVIVGAYFQALEEIVRLTESYGEPIDIENENDLQKIVSSCIGTKFSSK--------WGNLIVDLAVKAVKSVYKKEGDYVEIDVKRYAKVEKIPGGLLEESVVLDGVMFNKDVTHPGMRR 231          
The following BLAST results are available for this feature:
BLAST of FC878202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPD_YEAST1.037e-3439.00T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPD_TAKRU1.037e-3442.35T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
THS2_HALVO1.768e-3438.57Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPB_YEAST2.309e-3440.27T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPD_SCHPO3.939e-3442.08T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_ASHGO3.939e-3439.17T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPA_ENCCU3.939e-3438.33T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
TCPE_MACFA8.776e-3437.16T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN8.776e-3437.16T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPG_OXYGR1.497e-3331.33T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878202 ID=FC878202; Name=FC878202; organism=Citrus clementina; type=EST; length=944bp
AATCACTAGAAACAACTAGTCACTGCGCAGTACACACTTGGGATCTCGTC
AGTGTTATTGAACTTGAGTAAGGGGTAAAAAAAAAAAAATCAAACCCTAG
CGTTCTCTCATAAACTTCATTTCGATTTCAATCTCAACAATGGCAGCCAT
GATGCAGCCGCAGATCATTTTATTGAAAGAAGGAACCGACACGTCGCAAG
GAAAGGCTCAGTTGGTGAGCAACATAAACGCGTGCACGGCGGTGGCTGAT
GTGGTGAGGTCGACGCTGGGCCCCAGAGGGATGGACAAGTTGATACACGA
CGACAAGGGCACCGTTACCATCTCTAACGACGGCGCCACCATCATGAAGC
TTCTCGACATCGTCCATCCCGCCGCCAAGATTCTCGTTGACATCGCCAAG
TCTCAGGACTCTGAAGTCGGCGACGGTACCACCACTGTGGTTCTGCTTGC
GGCCGAGTTCTTGAGGGAGGCCAAGCCTTTTATTGAGGATGGAGTTCACC
CTCAGAATTTGATTAGGAGTTTTCGCAACGCCAGCTATAAGGCGATTCAG
AAGATCAAGGAATTGGCTAAAAGCATAGAGGGTCAAAGTTTAGAAGAGAA
GAAAAGACTATTGTCAAAATGTGCTGCCACTACGCTTTCTTCTAAACTTA
TTGGTGGTGAAAAAGAGTTTTTTGCTTCAATGGTTGTAGATGCTGTTGGT
GCAATTGGCGATGGTGATAGGTTGAATATGATTGGAATCAAGAAGGTTCC
AGGTGGTACCATGCGGGATTCCTTTCTAGTAAATGGTGTTGCTTTTAAGA
AGACATTTTCGTATGCAGGCTTTGAACAGCAACCTAAGAAGTTTTTAAAC
CCAAAGATACTCTTATTGAACATTGAGTTGGAACTGAAATCTGAGAAAGA
AAATGCTGAGATAAGACTTTCAGATCCATCACAGTATCAATCAA
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