FC878207

Overview
NameFC878207
Unique NameFC878207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMS (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain AS9601) GN=rlmN PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.507e-57
Identity = 121/243 (49.79%), Postives = 159/243 (65.43%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S  +L+ +A+D GQ ++RG+Q+++ IY  + K K I+    LP  FR  L+  G+ V  L I     A DGT+KLL+  EDN  IE VGIP E      RLTAC+SSQVGCP+ C FCATGK G  R+L + EI+ Q+L IE     +VTN+VFMGMGEP+LN+  +L + R +N D QI QR IT+STV +P  I KL++         Q TLAISLHA NQK RE+I+PSAK+Y ++
Sbjct:    4 LLGSSINDLENVALDYGQAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKLKVDGFKVSELVIKERNLANDGTLKLLLSTEDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIEYEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINNDFQISQRKITVSTVAIPKMISKLSAKSFQILSNCQFTLAISLHASNQKTRETIIPSAKNYEIK 241          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROM9 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9312) GN=rlmN PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.110e-56
Identity = 119/243 (48.97%), Postives = 159/243 (65.43%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S ++L+ +A+D GQ ++RG+Q++  IY  + K K I+    LP  FR  L++ G+ V  L       A DGT+KLL+   DN  IE VGIP E      RLTAC+SSQVGCP+ C FCATGK G  R+L + EI+ Q+L IE     +VTN+VFMGMGEP+LN+  +L + R +N+D QI QR IT+STV VP  + KL++         Q TLAISLHA NQK RE+I+PSAK+Y ++
Sbjct:    4 LLGSSIKDLENIALDYGQAAFRGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKLKDDGFKVSELSFQEKKLANDGTLKLLLSTNDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIENEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINEDFQISQRKITVSTVAVPKMMSKLSARSFQILGNCQFTLAISLHASNQKTRETIIPSAKNYEIK 241          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMP (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rlmN PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.473e-56
Identity = 115/243 (47.33%), Postives = 160/243 (65.84%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S ++L+K+A++ GQ ++RG+Q+++ +Y  K + K I+    LP  FR+ L+   +  G L +     A DGT+KLL+   DN  +E VGIP E      RLTAC+SSQVGCP+ C FCATGK G  R+L   EI+ Q+L IE     +V+N+VFMGMGEP+LN+  +L + R +N+D  I QR IT+STV +P  I KL+        K Q TLAISLHA NQK+RE+I+PSAK+Y ++
Sbjct:    4 LLGCSVKDLEKIALNYGQAAFRGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQLKNEAFLFGELTLKEKYLATDGTLKLLLNTRDNESVECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKVSEILDQILFIENQMNQKVSNIVFMGMGEPLLNIDELLLSIRSINEDFAISQRKITVSTVAIPKMISKLSELSFQVLGKCQFTLAISLHASNQKIREAIIPSAKNYHIK 241          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNR3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain RCC307) GN=rlmN PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.570e-55
Identity = 115/241 (47.72%), Postives = 154/241 (63.90%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG+S+ +L+  A D G   +RG+QLH  +Y +  +   +   LP + R   Q+    +GR        A DGT+KLL+  +D   +ETVGIP  D     RLT CVSSQVGCP+ C FCATGK G  R+L  HEIV QVL + E+ + R ++VVFMGMGEP+LN   VL A  CL++D+ +  R IT+STVGVPNT+ +LA   L      Q TLA+SLHAP+Q LRE ++P+A++YP E
Sbjct:    6 LLGLSQAQLETWAKDQGLPPFRGRQLHDWLYAKGARHWHDITVLPAALR---QQEPLPLGRSNELERHLAQDGTLKLLLATDDGLSLETVGIPTRD-----RLTVCVSSQVGCPMACRFCATGKEGLQRSLEPHEIVDQVLTVREVMQRRPSHVVFMGMGEPLLNSDHVLTAIDCLSRDLGMAMRQITVSTVGVPNTLPRLAELALERLGRAQFTLAVSLHAPDQALREELIPTARAYPYE 238          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_NITMS (Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.776e-46
Identity = 104/231 (45.02%), Postives = 144/231 (62.34%), Query Frame = 3
Query:  183 QELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK--GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSA 851
            +E++KL +D+G   YR  Q+   +Y +  K+I +  QLP+  R +  EAG+T+G       V + DG T KLL++L D   +ETV +  E  K  G  R T CVS+Q+GC + C FCATG+ GF  NL +  IV QV+   E+ + R   VTN+VFMGMGEPM N   ++ A + L  D    +GQR ITIST+G+ + I+KLA   LQ  LAISLHAPN +LR+ +VP+A
Sbjct:   10 EEMEKLVIDMGYDRYRADQILLPLYYKFPKDINDIPQLPKKLREEFTEAGYTIGSAKEIHRVVSDDGDTTKLLLELSDGSSVETVLMQYEPTKIGGHPRSTICVSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQRGEHVTNLVFMGMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGLAISLHAPNNELRKKLVPTA 240          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHLTE (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium tepidum GN=rlmN PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.135e-43
Identity = 105/247 (42.51%), Postives = 147/247 (59.51%), Query Frame = 3
Query:  174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRT--------VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCL-NKDVQ--IGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +  +EL +L   LG+ +YR  QLH  +Y  +    E    L +  R  L    W +    +  T        +   + T K LIKLEDN L+E+V IP E+     R+TAC+SSQ+GCPLRC+FCATG  GF RNL++ EI  QV  +E+  + R    +TN+VFMGMGEP+LNL +VLE+   L  KD Q  I +R ITISTVG+P  + ++A   L++ LAISLH+ +Q +RE ++P A    L+
Sbjct:   28 LGRKELTELLTRLGEPAYRANQLHRWLYSNQALRFEEMSTLSKQLRQKLASE-WIIHPASLVGTERETTDASLVTGNPTAKFLIKLEDNELVESVLIPSEE-----RITACISSQIGCPLRCTFCATGHMGFRRNLTASEITDQVFLLEKEAQKRHWRGLTNIVFMGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSGLKTKLAISLHSADQLIRERMMPIAADITLD 268          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNWW (Ribosomal RNA large subunit methyltransferase N OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rlmN PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.984e-43
Identity = 97/250 (38.80%), Postives = 147/250 (58.80%), Query Frame = 3
Query:  150 VDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR--------VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            ++   LLG+   ++++  + L +  +RG+Q++  IY+++         LP+S R  L E    V    + +     DG+ K L++L+D + IE V +P   +K     T C+S+QVGCP+ CSFCATG+ GF RNL + EI+GQ L  ++    R        ++NVV+MGMGEP+LN   V+++   LN  + + +GQR ITIST G    IKKLA   +Q TLAISLHA +  LR+ ++P  + YPLE
Sbjct:    4 IEKKQLLGLDLNQMEEFLLGLEEPRFRGRQVYKWIYQKECSSFYEMSDLPRSLRKKLDEKA-RVSIPRVLKQRVGKDGSRKFLMELDDKKKIECVLLPQSRDK-KSSYTLCLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQYLGSKKELSKRLKSPRAELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENIQLTLAISLHACDNSLRDQLIPLNRKYPLE 251          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEMA (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga maritima GN=rlmN PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.556e-42
Identity = 101/238 (42.44%), Postives = 148/238 (62.18%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LL +S +EL     +LG + YR  Q+   ++ +KV   +    L +  R  L+E  +++  L +  + V+  DGT K L +LED   IE+V +       P R+TAC+S+QVGCP++C FCATG  GF RNL++ EIV Q+L++E+  K ++ NVV+MGMGEP+LN ++ +++ R LN  K   IG R ITISTVG+P+ I +LA   L   LA+SLHAP    R+ +VP  K Y +E
Sbjct:    4 LLDLSYEELVTEITNLGLERYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKEH-FSISFLKLLDKKVSRIDGTTKFLWELEDGNTIESVML-----FHPDRITACISTQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIE 235          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHLPD (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rlmN PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.556e-42
Identity = 102/245 (41.63%), Postives = 151/245 (61.63%), Query Frame = 3
Query:  174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTV----TAAD--GTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD---VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            +S QEL++   +LG+ +YR +Q+H  I+  +    E    +    RN L +  + +G  PI        +A D   TVKLL++L+DN  IETV IP E+     R+TACVSSQVGCPL+C FCA+G+ GF RNLS+ EI+ QV ++ +  +     + +TN+VFMGMGEP+LN +++ E+   L+       + QR ITISTVG+   I +L    L++ LAISLH+ +Q+ RES++P A  + L
Sbjct:   11 LSRQELRQAIANLGEPAYRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQ-FRIG-FPILADCQQDGSANDPFSTVKLLLELDDNEKIETVLIPSEN-----RMTACVSSQVGCPLQCRFCASGQTGFKRNLSADEIIDQVFSLNDFIRTKHESNEITNIVFMGMGEPLLNFENLKESIEVLSDQSYKFNLPQRKITISTVGIIPGINELGKSGLKTKLAISLHSASQETRESLIPVASEFSL 248          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEP1 (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rlmN PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.032e-42
Identity = 102/238 (42.86%), Postives = 148/238 (62.18%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LL +S +EL     +LG + YR  Q+   I+ +KV   +    L +  R  L+E  +++  L +  + V+  DGT K L +LED   IE+V +       P R+TAC+S+QVGCP++C FCATG  GF RNL++ EIV Q+L++E+  K ++ NVV+MGMGEP+LN ++ +++ R LN  K   IG R ITISTVG+P+ I +LA   L   LA+SLHAP    R+ +VP  K Y +E
Sbjct:    4 LLDLSYEELITEITNLGLERYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKEH-FSIPFLKLLDKKVSRIDGTTKFLWELEDGNTIESVML-----FHPDRITACISTQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIE 235          
The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_PROMS6.507e-5749.79Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM91.110e-5648.97Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMP2.473e-5647.33Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNR33.570e-5547.72Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_NITMS1.776e-4645.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CHLTE3.135e-4342.51Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNWW6.984e-4338.80Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEMA1.556e-4242.44Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CHLPD1.556e-4241.63Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEP12.032e-4242.86Ribosomal RNA large subunit methyltransferase N OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA6DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTAGGT
TGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAAG
AAATCTTTCAAGCCATGAAATTGTTGGGCAGGTGTTAGCAATTGAAGAGA
TCTTCAAGCATAGGGTGACAAACGTAGTGTTCATGGGAATGGGCGAGCCA
ATGTTGAACCTAAAGTCTGTGCTTGAAGCACATCGATGTTTGAATAAGGA
TGTGCAAATTGGACAAAGGATGATTACAATTTCCACTGTGGGGGTTCCGA
ACACAATTAAAAAGTTGGCCTCTTACAAACTTCAGTCAACATTGGCTATC
AGCTTACATGCTCCAAACCAGAAACTGAGGGAATCAATTGTGCCAAGTGC
AAAGTCCTATCCTCTTGAA
back to top