FC878207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMS (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain AS9601) GN=rlmN PE=3 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 6.507e-57 Identity = 121/243 (49.79%), Postives = 159/243 (65.43%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S +L+ +A+D GQ ++RG+Q+++ IY + K K I+ LP FR L+ G+ V L I A DGT+KLL+ EDN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q+L IE +VTN+VFMGMGEP+LN+ +L + R +N D QI QR IT+STV +P I KL++ Q TLAISLHA NQK RE+I+PSAK+Y ++ Sbjct: 4 LLGSSINDLENVALDYGQAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKLKVDGFKVSELVIKERNLANDGTLKLLLSTEDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIEYEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINNDFQISQRKITVSTVAIPKMISKLSAKSFQILSNCQFTLAISLHASNQKTRETIIPSAKNYEIK 241
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROM9 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9312) GN=rlmN PE=3 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 1.110e-56 Identity = 119/243 (48.97%), Postives = 159/243 (65.43%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S ++L+ +A+D GQ ++RG+Q++ IY + K K I+ LP FR L++ G+ V L A DGT+KLL+ DN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q+L IE +VTN+VFMGMGEP+LN+ +L + R +N+D QI QR IT+STV VP + KL++ Q TLAISLHA NQK RE+I+PSAK+Y ++ Sbjct: 4 LLGSSIKDLENIALDYGQAAFRGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKLKDDGFKVSELSFQEKKLANDGTLKLLLSTNDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIENEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINEDFQISQRKITVSTVAVPKMMSKLSARSFQILGNCQFTLAISLHASNQKTRETIIPSAKNYEIK 241
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMP (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rlmN PE=3 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 2.473e-56 Identity = 115/243 (47.33%), Postives = 160/243 (65.84%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S ++L+K+A++ GQ ++RG+Q+++ +Y K + K I+ LP FR+ L+ + G L + A DGT+KLL+ DN +E VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L EI+ Q+L IE +V+N+VFMGMGEP+LN+ +L + R +N+D I QR IT+STV +P I KL+ K Q TLAISLHA NQK+RE+I+PSAK+Y ++ Sbjct: 4 LLGCSVKDLEKIALNYGQAAFRGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQLKNEAFLFGELTLKEKYLATDGTLKLLLNTRDNESVECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKVSEILDQILFIENQMNQKVSNIVFMGMGEPLLNIDELLLSIRSINEDFAISQRKITVSTVAIPKMISKLSELSFQVLGKCQFTLAISLHASNQKIREAIIPSAKNYHIK 241
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNR3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain RCC307) GN=rlmN PE=3 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 3.570e-55 Identity = 115/241 (47.72%), Postives = 154/241 (63.90%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG+S+ +L+ A D G +RG+QLH +Y + + + LP + R Q+ +GR A DGT+KLL+ +D +ETVGIP D RLT CVSSQVGCP+ C FCATGK G R+L HEIV QVL + E+ + R ++VVFMGMGEP+LN VL A CL++D+ + R IT+STVGVPNT+ +LA L Q TLA+SLHAP+Q LRE ++P+A++YP E Sbjct: 6 LLGLSQAQLETWAKDQGLPPFRGRQLHDWLYAKGARHWHDITVLPAALR---QQEPLPLGRSNELERHLAQDGTLKLLLATDDGLSLETVGIPTRD-----RLTVCVSSQVGCPMACRFCATGKEGLQRSLEPHEIVDQVLTVREVMQRRPSHVVFMGMGEPLLNSDHVLTAIDCLSRDLGMAMRQITVSTVGVPNTLPRLAELALERLGRAQFTLAVSLHAPDQALREELIPTARAYPYE 238
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_NITMS (Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.776e-46 Identity = 104/231 (45.02%), Postives = 144/231 (62.34%), Query Frame = 3 Query: 183 QELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK--GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSA 851 +E++KL +D+G YR Q+ +Y + K+I + QLP+ R + EAG+T+G V + DG T KLL++L D +ETV + E K G R T CVS+Q+GC + C FCATG+ GF NL + IV QV+ E+ + R VTN+VFMGMGEPM N ++ A + L D +GQR ITIST+G+ + I+KLA LQ LAISLHAPN +LR+ +VP+A Sbjct: 10 EEMEKLVIDMGYDRYRADQILLPLYYKFPKDINDIPQLPKKLREEFTEAGYTIGSAKEIHRVVSDDGDTTKLLLELSDGSSVETVLMQYEPTKIGGHPRSTICVSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQRGEHVTNLVFMGMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGLAISLHAPNNELRKKLVPTA 240
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHLTE (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium tepidum GN=rlmN PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.135e-43 Identity = 105/247 (42.51%), Postives = 147/247 (59.51%), Query Frame = 3 Query: 174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRT--------VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCL-NKDVQ--IGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 + +EL +L LG+ +YR QLH +Y + E L + R L W + + T + + T K LIKLEDN L+E+V IP E+ R+TAC+SSQ+GCPLRC+FCATG GF RNL++ EI QV +E+ + R +TN+VFMGMGEP+LNL +VLE+ L KD Q I +R ITISTVG+P + ++A L++ LAISLH+ +Q +RE ++P A L+ Sbjct: 28 LGRKELTELLTRLGEPAYRANQLHRWLYSNQALRFEEMSTLSKQLRQKLASE-WIIHPASLVGTERETTDASLVTGNPTAKFLIKLEDNELVESVLIPSEE-----RITACISSQIGCPLRCTFCATGHMGFRRNLTASEITDQVFLLEKEAQKRHWRGLTNIVFMGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSGLKTKLAISLHSADQLIRERMMPIAADITLD 268
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNWW (Ribosomal RNA large subunit methyltransferase N OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rlmN PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 6.984e-43 Identity = 97/250 (38.80%), Postives = 147/250 (58.80%), Query Frame = 3 Query: 150 VDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR--------VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 ++ LLG+ ++++ + L + +RG+Q++ IY+++ LP+S R L E V + + DG+ K L++L+D + IE V +P +K T C+S+QVGCP+ CSFCATG+ GF RNL + EI+GQ L ++ R ++NVV+MGMGEP+LN V+++ LN + + +GQR ITIST G IKKLA +Q TLAISLHA + LR+ ++P + YPLE Sbjct: 4 IEKKQLLGLDLNQMEEFLLGLEEPRFRGRQVYKWIYQKECSSFYEMSDLPRSLRKKLDEKA-RVSIPRVLKQRVGKDGSRKFLMELDDKKKIECVLLPQSRDK-KSSYTLCLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQYLGSKKELSKRLKSPRAELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENIQLTLAISLHACDNSLRDQLIPLNRKYPLE 251
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEMA (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga maritima GN=rlmN PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.556e-42 Identity = 101/238 (42.44%), Postives = 148/238 (62.18%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LL +S +EL +LG + YR Q+ ++ +KV + L + R L+E +++ L + + V+ DGT K L +LED IE+V + P R+TAC+S+QVGCP++C FCATG GF RNL++ EIV Q+L++E+ K ++ NVV+MGMGEP+LN ++ +++ R LN K IG R ITISTVG+P+ I +LA L LA+SLHAP R+ +VP K Y +E Sbjct: 4 LLDLSYEELVTEITNLGLERYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKEH-FSISFLKLLDKKVSRIDGTTKFLWELEDGNTIESVML-----FHPDRITACISTQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIE 235
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHLPD (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rlmN PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.556e-42 Identity = 102/245 (41.63%), Postives = 151/245 (61.63%), Query Frame = 3 Query: 174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTV----TAAD--GTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD---VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866 +S QEL++ +LG+ +YR +Q+H I+ + E + RN L + + +G PI +A D TVKLL++L+DN IETV IP E+ R+TACVSSQVGCPL+C FCA+G+ GF RNLS+ EI+ QV ++ + + + +TN+VFMGMGEP+LN +++ E+ L+ + QR ITISTVG+ I +L L++ LAISLH+ +Q+ RES++P A + L Sbjct: 11 LSRQELRQAIANLGEPAYRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQ-FRIG-FPILADCQQDGSANDPFSTVKLLLELDDNEKIETVLIPSEN-----RMTACVSSQVGCPLQCRFCASGQTGFKRNLSADEIIDQVFSLNDFIRTKHESNEITNIVFMGMGEPLLNFENLKESIEVLSDQSYKFNLPQRKITISTVGIIPGINELGKSGLKTKLAISLHSASQETRESLIPVASEFSL 248
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEP1 (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rlmN PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.032e-42 Identity = 102/238 (42.86%), Postives = 148/238 (62.18%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LL +S +EL +LG + YR Q+ I+ +KV + L + R L+E +++ L + + V+ DGT K L +LED IE+V + P R+TAC+S+QVGCP++C FCATG GF RNL++ EIV Q+L++E+ K ++ NVV+MGMGEP+LN ++ +++ R LN K IG R ITISTVG+P+ I +LA L LA+SLHAP R+ +VP K Y +E Sbjct: 4 LLDLSYEELITEITNLGLERYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKEH-FSIPFLKLLDKKVSRIDGTTKFLWELEDGNTIESVML-----FHPDRITACISTQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIE 235 The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bpback to top |