FC878236

Overview
NameFC878236
Unique NameFC878236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGE2_MOUSE (Protein angel homolog 2 OS=Mus musculus GN=Angel2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.737e-18
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  343 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 654
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E  GY   YK +TG   DGCA+ +K  +F LL    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEF 273          

HSP 2 Score: 46.9802 bits (110), Expect = 1.737e-18
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 2
Query:  722 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSR-AQIVAEKWG-NIPVVLAGDFNITLQSAIY 898
            S  + + N H+LYNP RG++KL Q+  L +  A +   K G + P+V+ GDFN    S +Y
Sbjct:  301 SPSICIANTHLLYNPRRGDIKLTQLAMLLAEIANVTHRKDGSSCPIVMCGDFNSVPGSPLY 361          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: ANGEL_DROME (Protein angel OS=Drosophila melanogaster GN=angel PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.393e-17
Identity = 59/172 (34.30%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  274 EPSPDVLRHWIDA-------DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVM---------EKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEADAQHKIKK 729
            E S D  R W          DP+  SS   F VVSYNIL      +H  LY  + +E++ W RR++ + +EL+ L+PDI+C+QE+   FD L V+         +K  Y   YK++TG   DGCA+ + + KF LL+  ++E  +  +    R+NVA  + F    Q + +K
Sbjct:   41 ESSHDRNRRWTSLGNQAEGRDPHKCSS---FKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILCLQEMQ--FDHLPVLVQRLRMGNGKKLAYV--YKKKTGCRTDGCAIVYDSSKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQQEQQK 205          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_YARLI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Yarrowia lipolytica GN=CCR4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.544e-16
Identity = 42/130 (32.31%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  328 SSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCY----------KRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN 678
            +S + F+V+SYN L DK  +    ++       + W  R   + +E+IG + DI+C QEVD   + D  +  + + GYAG Y          K +    VDGCA+F+K   F L+E+ S++F    L+ N
Sbjct:  336 ASSDTFTVMSYNTLCDK--YTTVQMHGYTPLWALGWKHRSETLLKEVIGYDSDILCFQEVDGASFEDFWSPKLHQLGYAGLYHPKTRARTMSKEKDAKRVDGCAIFYKTKSFCLIEKLSLDFSSLALKNN 463          

HSP 2 Score: 35.8094 bits (81), Expect = 5.544e-16
Identity = 23/83 (27.71%), Postives = 38/83 (45.78%), Query Frame = 2
Query:  716 TKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKW-------------GN---------IPVVLAGDFNITLQSAIY 898
            T  ++++V N H+ ++P   +VKL Q+  L    +  AE+              GN         +P+V+ GDFN T  S +Y
Sbjct:  491 TTGQKIIVTNTHLHWDPAFNDVKLIQVALLLDEVEKFAERVAKDSNRVSARNQDGNNVKYESGKKLPLVICGDFNSTTDSGVY 573          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_USTMA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis GN=CCR4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.550e-16
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  277 PSPDVLRHWIDADPN----------PISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFD-ILNVMEKTGYAGCY-----KRRTGDN----VDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P P   R WI  DP+            ++QE F+V+SYNIL D+ A     +Y       + W+ RK  I QE++  + DI C+QEV  ++Y D  L+ + +  Y G +      R   D+    VDGCA+F+K++K++L+E+  +EF +  L+
Sbjct:  272 PLPPPEREWIMIDPDLPDLDADKHANDATQESFNVLSYNILFDRYATAQ--MYGYTPSWALAWDYRKEFILQEVMSYSADICCLQEVGVEQYEDYFLHHLSQQDYEGVFYPKSRARTMRDDERRRVDGCAIFYKSNKYQLIEKQLVEFNQIALQ 423          

HSP 2 Score: 31.9574 bits (71), Expect = 5.550e-16
Identity = 23/94 (24.47%), Postives = 40/94 (42.55%), Query Frame = 2
Query:  686 NFPLLRQMRNTKS-RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQ-------------IVAEKW---------GNIPVVLAGDFNITLQSAIY 898
            N  ++  + N  S  R++V N+H  ++P   +VKL Q+  L    +              VAE +           IP ++ GDFN   ++ +Y
Sbjct:  442 NIAVIALLENKLSGSRIVVANVHTHWDPAFRDVKLVQVAMLMDEVEKAGARFAKLPPKPSVAEGYPPPPKYTHANQIPTIICGDFNSVPETGVY 535          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_PHANO (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Phaeosphaeria nodorum GN=CCR4 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 2.063e-15
Identity = 43/132 (32.58%), Postives = 62/132 (46.97%), Query Frame = 1
Query:  295 RHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEF 654
            R WI  D     +QE  + +SYNIL DK   + +  Y       + W  R+ LI  EL   N DI+C+QE+D+            ++D   V      A     R    VDGCA+F+K  K+ LL++  I+F
Sbjct:  205 RDWIVLDEITDPAQETVTALSYNILCDKYCTQSQ--YGYTPSSALAWETRRELILGELKQRNADIVCLQEIDQDSFNEYFREKLAHYDYKGVFWPKSRARTMAEREAKLVDGCAIFYKNSKYVLLDKQLIDF 334          

HSP 2 Score: 38.1206 bits (87), Expect = 2.063e-15
Identity = 17/41 (41.46%), Postives = 22/41 (53.66%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R +VGN+HV +NP   +VKL Q+  L       A KW   P
Sbjct:  374 RFIVGNVHVFWNPAFTDVKLVQVAILMEGISKFATKWSKFP 414          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: NOCT_MOUSE (Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.821e-15
Identity = 59/197 (29.95%), Postives = 93/197 (47.21%), Query Frame = 1
Query:  283 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKTGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN---VAQ-LSAFEADAQH-----KIKKSTGW*HTRSL*SKPRGSEIRSNLFSFLKG 816
            P   R ++D   +  SS     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD    ++ + GY G         C      +  DGCA+F+  ++F+L+  T+I      L+ N   +AQ L   E+  Q       +K  TGW   RS     +G ++  NL +  +G
Sbjct:  121 PRYQRDFVDLRTDCSSSHSPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLISSTNIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRS----AQGCDLLQNLQNITQG 312          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: NOCT_RAT (Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4l PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 59/197 (29.95%), Postives = 93/197 (47.21%), Query Frame = 1
Query:  283 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKTGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN---VAQ-LSAFEADAQH-----KIKKSTGW*HTRSL*SKPRGSEIRSNLFSFLKG 816
            P   R ++D   +  SS     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD L  ++ + GY G         C      +  DGCA+F+   +F+L+  T+I      L+ N   +AQ L   E+  Q       +K  TGW   RS     +G ++  +L +  +G
Sbjct:   47 PRYQRDFVDLRTDCSSSHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQSRFKLINSTNIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRS----AQGCDLLQSLQNITEG 238          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: PDE12_HUMAN (2',5'-phosphodiesterase 12 OS=Homo sapiens GN=PDE12 PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 1.675e-14
Identity = 45/129 (34.88%), Postives = 62/129 (48.06%), Query Frame = 1
Query:  352 VSYNILGDKNA---FKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYF---DILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEADAQHK 720
            VSYNIL D  A   F    LY       ++ + R+ LI +EL G N D+IC+QEVDR      ++  +E  G  G ++ +     +G A F++  KF LL Q  I F E           A E+D  HK
Sbjct:  298 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVFSDSLVPALEAFGLEGVFRIK---QHEGLATFYRKSKFSLLSQHDISFYE-----------ALESDPLHK 412          

HSP 2 Score: 40.817 bits (94), Expect = 1.675e-14
Identity = 20/66 (30.30%), Postives = 35/66 (53.03%), Query Frame = 2
Query:  704 QMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            Q     S+R+ V N H+ ++P  G ++L Q+   L+    +  + +  IPV+  GDFN T  + +Y
Sbjct:  441 QSTKDSSKRICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMY 506          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_SCHPO (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Schizosaccharomyces pombe GN=ccr4 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.818e-14
Identity = 46/127 (36.22%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  316 PNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD-RYFDILNV--MEKTGYAGCY----KRRTGDN-----VDGCAMFWKADKFRLLEQTSIEFKE 660
            P+  S   +F+++SYN+L ++ A     LY       + W+ RK LI QEL G N DIIC+QEVD   +D      M   GY G +    + RT +      VDGCA F+K  K+ + E+  IE+ +
Sbjct:  327 PSTTSKNLKFTIMSYNVLCERYATS--TLYGYTPSWALSWSYRKDLIMQELGGYNADIICLQEVDVENYDTFFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEYNQ 451          

HSP 2 Score: 34.6538 bits (78), Expect = 2.818e-14
Identity = 23/94 (24.47%), Postives = 41/94 (43.62%), Query Frame = 2
Query:  686 NFPLLRQMRNTKS-RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN----------------------IPVVLAGDFNITLQSAIY 898
            N  ++  + N ++  R++V N H+ ++P   +VK+ Q+  L      VA K+ N                      IP+++ GDFN    S +Y
Sbjct:  475 NISVITLLENKENGSRLIVANCHIHWDPQFRDVKVIQVAMLMDEIAQVATKFRNMPSKIPSDQLKDERPTYPEYLKIPILICGDFNSVQGSGVY 568          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: PDE12_RAT (2',5'-phosphodiesterase 12 OS=Rattus norvegicus GN=Pde12 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.827e-14
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  352 VSYNILGDKNA---FKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYF---DILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKE 660
            VSYNIL D  A   F    LY       ++ + R+ LI +EL G N D+IC+QEVDR      ++  +E  G  G ++ +     +G A F++  KFRLL Q  I F+E
Sbjct:  297 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIK---QHEGLATFYRKSKFRLLSQHDISFQE 402          

HSP 2 Score: 38.5058 bits (88), Expect = 2.827e-14
Identity = 25/91 (27.47%), Postives = 44/91 (48.35%), Query Frame = 2
Query:  641 QALNLKSLAFVKMWHNFPLLR----QMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            + L L  LA  K+     +L+    Q     S+++ V N H+ ++P  G ++L Q+   L     +  + +  IPV+  GDFN T  + +Y
Sbjct:  415 EKLALNPLAQEKVLQRSSVLQISVLQSTTDSSKKICVANTHLYWHPKGGYIRLIQMAAALVHIRHVSCDLYPGIPVIFCGDFNSTPSTGMY 505          
The following BLAST results are available for this feature:
BLAST of FC878236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ANGE2_MOUSE1.737e-1837.38Protein angel homolog 2 OS=Mus musculus GN=Angel2 ... [more]
ANGEL_DROME2.393e-1734.30Protein angel OS=Drosophila melanogaster GN=angel ... [more]
CCR4_YARLI5.544e-1632.31Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_USTMA5.550e-1633.12Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_PHANO2.063e-1532.58Glucose-repressible alcohol dehydrogenase transcri... [more]
NOCT_MOUSE3.821e-1529.95Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3[more]
NOCT_RAT8.512e-1529.95Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4... [more]
PDE12_HUMAN1.675e-1434.882',5'-phosphodiesterase 12 OS=Homo sapiens GN=PDE1... [more]
CCR4_SCHPO2.818e-1436.22Glucose-repressible alcohol dehydrogenase transcri... [more]
PDE12_RAT2.827e-1437.612',5'-phosphodiesterase 12 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878236 ID=FC878236; Name=FC878236; organism=Citrus clementina; type=EST; length=899bp
AGAGAGTGGTTACTTGTGGATCAATCAATGAGGTCCGAAGCCACTTCCTC
CTCTTCTTGGCTCGGCCGGATCCCACCAACGGCCACCTCCGCGCCGAGCG
GCGGCTCCGGCAAGTGCCGGCACTTCATCTTCTTCTCCTCCTCCTGCTGC
AAGACTACAAACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTC
CTCATCATCATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACC
CTCTCCGACGTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCAC
TGGATCGACGCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGT
CGTGTCATATAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATT
TATATCAAAATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGG
TTAATATGCCAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCA
AGAGGTGGACAGGTATTTTGATATTCTGAATGTTATGGAGAAAACGGGAT
ATGCTGGTTGTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCG
ATGTTTTGGAAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGA
ATTTAAAGAGTTTGGCCTTCGTGAAAATGTGGCACAACTTTCCGCTTTTG
AGGCAGATGCGCAACACAAAATCAAGAAGAGTACTGGTTGGTAACATACA
CGTTCTTTATAATCCAAACCGAGGGGAAGTGAAATTAGGTCAAATTTGTT
TTCTTTCCTCAAGGGCACAAATTGTTGCAGAGAAATGGGGTAATATCCCT
GTTGTGCTTGCTGGTGACTTCAATATCACTCTTCAAAGTGCAATTTACA
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