FC878236

Overview
NameFC878236
Unique NameFC878236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.040e-12
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 1
Query:  247 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDIL-NVMEKTGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 660
            +P  RK       D + H +D D   I S   F+V+SYNIL D +A    DLY       + W  R++ + +E++G   D++C+QEV  D + +I    ++K GY   YKR+T +        +DGCA F++ D+F  +++  +EF +
Sbjct:  221 SPSPRKLIPVNGADGMGH-LDQDAR-IQSAGSFTVLSYNILSDTSASS--DLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNK 364          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_RAT (CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  256 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669
            +R   ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  256 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669
            +R   ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  247 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-YFD--ILNVMEKTGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 660
            +P  R+       DV  H +D++  P+S    F+V+SYNIL D   +   D+Y       + W  R++ + +E++    DI+C+QEV   +F+   L  ++K GY G +KR+T +        +DGCA F++ D+F  +++  +EF +
Sbjct:  218 SPSPRRLISISGTDVTGH-LDSNGRPLS-MGTFTVLSYNILSD--TYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNK 361          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASPTN (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-12
Identity = 51/148 (34.46%), Postives = 69/148 (46.62%), Query Frame = 1
Query:  265 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P   P PD  R W+  D    SS E+ +V+S+N L D +A      Y   R   + W  R+ LI  EL   + DI+C+QEVD+            Y D   V    G A   +     NVDGCA F+K  KF LL++  I F +  +R
Sbjct:  285 PVHLPPPD--RDWVILDDTS-SSTEKVTVLSHNALCDSSATSSHFGYTPSRA--LSWEFRRELILSELRSHDSDIVCLQEVDQGSYNGFFREQLAYNDYKGVYWPRGRAMGMQEEEAKNVDGCATFFKGSKFILLDKQMINFGQTAVR 427          

HSP 2 Score: 21.9422 bits (45), Expect = 1.588e-12
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  845 IPVVLAGDFNITLQSAIY 898
            IP+ + GDFN +  SA Y
Sbjct:  538 IPLFMCGDFNSSPGSAAY 555          

HSP 3 Score: 21.557 bits (44), Expect = 1.588e-12
Identity = 11/41 (26.83%), Postives = 20/41 (48.78%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R +V N H+ ++P   +VKL Q   L      +++ +   P
Sbjct:  461 RFIVVNAHLYWDPAFKDVKLIQTAILMEEITKLSDGYAKWP 501          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  271 DEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669
            ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 EQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 302          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_HUMAN (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  256 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669
            +R   ++P P   R WI   +P+       FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DI+ +QEV+  +Y+    V +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  162 KRITTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_NEOFI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.844e-12
Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 1
Query:  265 PFDEPSPDVLRHWIDADPNPISSQER---FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P   P PD  R WI  D    SS  R    +V+SYN L D +A +    Y   R   + W  R+ LI  EL   + DIIC+QE+D+            Y D   V    G A   +      VDGCA F+KA KF LL++  I F +  +R
Sbjct:  354 PVHLPPPD--RDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKASKFILLDKQLINFGQTAVR 500          

HSP 2 Score: 24.2534 bits (51), Expect = 1.844e-12
Identity = 15/47 (31.91%), Postives = 24/47 (51.06%), Query Frame = 2
Query:  710 RNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R T SR ++V N H+ ++P   +VKL Q   L      ++E +   P
Sbjct:  529 RQTGSRFIVV-NAHLYWDPAFKDVKLIQTAILMEELTKLSETYAKWP 574          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: NOCT_XENLA (Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 55/183 (30.05%), Postives = 83/183 (45.36%), Query Frame = 1
Query:  328 SSQER-FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKTGY---------AGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN----VAQLSAFEADAQ-----HKIKKSTGW*HTRSL*SKPRGSEIRSNLFSFLKG 816
            S Q R F V+ +NIL      + +D +     E +KW  RK LI +E++   PD++C+QEVD YFD    ++ + GY         + C      +  DGCA+F+  D+F+L+    I      L+ N       L   E   Q       +K  TGW   R      +GS++  NL S  +G
Sbjct:   94 SQQPRTFRVMQWNILAQALG-EGKDNFIMCPMEALKWEERKYLILEEILMYQPDVLCLQEVDHYFDTFQPILSRLGYQCTFLAKPWSPCLDVEHNNGPDGCALFFLQDRFQLVNSAKIRLSARTLKTNQVAIAETLQCCETGRQLCFAVTHLKARTGWERFR----LAQGSDLLDNLESITQG 271          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_DEBHA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Debaryomyces hansenii GN=CCR4 PE=3 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 2.388e-12
Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  313 DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD-RYFDI--LNVMEKTGYAGCYKRRT---------GDNVDGCAMFWKADKFRLLEQTSIEF 654
            D N   + + F+++SYN L    A     +Y+      ++W  R+  + +E++    D++CMQEV+ R F    + VM+  GY G +  +T            VDGCA F+K DKF LL + + E+
Sbjct:  472 DNNNSDTNDTFTMMSYNTLCQHYATTK--MYKYTPSWALEWGFRRAALQEEVLHFKSDLVCMQEVETRTFHEFWVPVMQGFGYKGVFFNKTRSKTMSESDSKKVDGCATFYKTDKFELLHKQNFEY 595          

HSP 2 Score: 33.113 bits (74), Expect = 2.388e-12
Identity = 18/66 (27.27%), Postives = 34/66 (51.52%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWG---------NIPVVLAGDFNITLQSAIY 898
            ++L  N H+ ++P   +VK  Q+  L    + + +K+          N  +V+ GDFN T ++A+Y
Sbjct:  635 KILFVNTHLHWDPAFNDVKTLQVGILLEELRTIMKKYHHTNSIDEIKNASMVICGDFNSTKENAVY 700          
The following BLAST results are available for this feature:
BLAST of FC878236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CCR4B_ARATH1.040e-1232.43Carbon catabolite repressor protein 4 homolog 2 OS... [more]
CNOT6_RAT1.359e-1232.45CCR4-NOT transcription complex subunit 6 OS=Rattus... [more]
CNOT6_MOUSE1.359e-1232.45CCR4-NOT transcription complex subunit 6 OS=Mus mu... [more]
CCR4A_ARATH1.359e-1230.41Carbon catabolite repressor protein 4 homolog 1 OS... [more]
CCR4_ASPTN1.588e-1234.46Glucose-repressible alcohol dehydrogenase transcri... [more]
CNOT6_XENLA1.775e-1232.88CCR4-NOT transcription complex subunit 6 OS=Xenopu... [more]
CNOT6_HUMAN1.775e-1231.79CCR4-NOT transcription complex subunit 6 OS=Homo s... [more]
CCR4_NEOFI1.844e-1235.10Glucose-repressible alcohol dehydrogenase transcri... [more]
NOCT_XENLA2.318e-1230.05Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1[more]
CCR4_DEBHA2.388e-1230.95Glucose-repressible alcohol dehydrogenase transcri... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878236 ID=FC878236; Name=FC878236; organism=Citrus clementina; type=EST; length=899bp
AGAGAGTGGTTACTTGTGGATCAATCAATGAGGTCCGAAGCCACTTCCTC
CTCTTCTTGGCTCGGCCGGATCCCACCAACGGCCACCTCCGCGCCGAGCG
GCGGCTCCGGCAAGTGCCGGCACTTCATCTTCTTCTCCTCCTCCTGCTGC
AAGACTACAAACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTC
CTCATCATCATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACC
CTCTCCGACGTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCAC
TGGATCGACGCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGT
CGTGTCATATAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATT
TATATCAAAATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGG
TTAATATGCCAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCA
AGAGGTGGACAGGTATTTTGATATTCTGAATGTTATGGAGAAAACGGGAT
ATGCTGGTTGTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCG
ATGTTTTGGAAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGA
ATTTAAAGAGTTTGGCCTTCGTGAAAATGTGGCACAACTTTCCGCTTTTG
AGGCAGATGCGCAACACAAAATCAAGAAGAGTACTGGTTGGTAACATACA
CGTTCTTTATAATCCAAACCGAGGGGAAGTGAAATTAGGTCAAATTTGTT
TTCTTTCCTCAAGGGCACAAATTGTTGCAGAGAAATGGGGTAATATCCCT
GTTGTGCTTGCTGGTGACTTCAATATCACTCTTCAAAGTGCAATTTACA
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