FC878236
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 1.040e-12 Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 1 Query: 247 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDIL-NVMEKTGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 660 +P RK D + H +D D I S F+V+SYNIL D +A DLY + W R++ + +E++G D++C+QEV D + +I ++K GY YKR+T + +DGCA F++ D+F +++ +EF + Sbjct: 221 SPSPRKLIPVNGADGMGH-LDQDAR-IQSAGSFTVLSYNILSDTSASS--DLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNK 364
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_RAT (CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12 Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1 Query: 256 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669 +R ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12 Identity = 49/151 (32.45%), Postives = 82/151 (54.30%), Query Frame = 1 Query: 256 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669 +R ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12 Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 1 Query: 247 NPLRRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-YFD--ILNVMEKTGYAGCYKRRTGD-------NVDGCAMFWKADKFRLLEQTSIEFKE 660 +P R+ DV H +D++ P+S F+V+SYNIL D + D+Y + W R++ + +E++ DI+C+QEV +F+ L ++K GY G +KR+T + +DGCA F++ D+F +++ +EF + Sbjct: 218 SPSPRRLISISGTDVTGH-LDSNGRPLS-MGTFTVLSYNILSD--TYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNK 361
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASPTN (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ccr4 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.588e-12 Identity = 51/148 (34.46%), Postives = 69/148 (46.62%), Query Frame = 1 Query: 265 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672 P P PD R W+ D SS E+ +V+S+N L D +A Y R + W R+ LI EL + DI+C+QEVD+ Y D V G A + NVDGCA F+K KF LL++ I F + +R Sbjct: 285 PVHLPPPD--RDWVILDDTS-SSTEKVTVLSHNALCDSSATSSHFGYTPSRA--LSWEFRRELILSELRSHDSDIVCLQEVDQGSYNGFFREQLAYNDYKGVYWPRGRAMGMQEEEAKNVDGCATFFKGSKFILLDKQMINFGQTAVR 427 HSP 2 Score: 21.9422 bits (45), Expect = 1.588e-12 Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2 Query: 845 IPVVLAGDFNITLQSAIY 898 IP+ + GDFN + SA Y Sbjct: 538 IPLFMCGDFNSSPGSAAY 555 HSP 3 Score: 21.557 bits (44), Expect = 1.588e-12 Identity = 11/41 (26.83%), Postives = 20/41 (48.78%), Query Frame = 2 Query: 728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850 R +V N H+ ++P +VKL Q L +++ + P Sbjct: 461 RFIVVNAHLYWDPAFKDVKLIQTAILMEEITKLSDGYAKWP 501
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12 Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 271 DEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669 ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 EQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 302
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNOT6_HUMAN (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12 Identity = 48/151 (31.79%), Postives = 82/151 (54.30%), Query Frame = 1 Query: 256 RRKPFDEPSPDVLRHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNV-MEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669 +R ++P P R WI +P+ FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DI+ +QEV+ +Y+ V +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 162 KRITTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_NEOFI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ccr4 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.844e-12 Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 1 Query: 265 PFDEPSPDVLRHWIDADPNPISSQER---FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672 P P PD R WI D SS R +V+SYN L D +A + Y R + W R+ LI EL + DIIC+QE+D+ Y D V G A + VDGCA F+KA KF LL++ I F + +R Sbjct: 354 PVHLPPPD--RDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKASKFILLDKQLINFGQTAVR 500 HSP 2 Score: 24.2534 bits (51), Expect = 1.844e-12 Identity = 15/47 (31.91%), Postives = 24/47 (51.06%), Query Frame = 2 Query: 710 RNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850 R T SR ++V N H+ ++P +VKL Q L ++E + P Sbjct: 529 RQTGSRFIVV-NAHLYWDPAFKDVKLIQTAILMEELTKLSETYAKWP 574
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: NOCT_XENLA (Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12 Identity = 55/183 (30.05%), Postives = 83/183 (45.36%), Query Frame = 1 Query: 328 SSQER-FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKTGY---------AGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN----VAQLSAFEADAQ-----HKIKKSTGW*HTRSL*SKPRGSEIRSNLFSFLKG 816 S Q R F V+ +NIL + +D + E +KW RK LI +E++ PD++C+QEVD YFD ++ + GY + C + DGCA+F+ D+F+L+ I L+ N L E Q +K TGW R +GS++ NL S +G Sbjct: 94 SQQPRTFRVMQWNILAQALG-EGKDNFIMCPMEALKWEERKYLILEEILMYQPDVLCLQEVDHYFDTFQPILSRLGYQCTFLAKPWSPCLDVEHNNGPDGCALFFLQDRFQLVNSAKIRLSARTLKTNQVAIAETLQCCETGRQLCFAVTHLKARTGWERFR----LAQGSDLLDNLESITQG 271
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_DEBHA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Debaryomyces hansenii GN=CCR4 PE=3 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 2.388e-12 Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 1 Query: 313 DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD-RYFDI--LNVMEKTGYAGCYKRRT---------GDNVDGCAMFWKADKFRLLEQTSIEF 654 D N + + F+++SYN L A +Y+ ++W R+ + +E++ D++CMQEV+ R F + VM+ GY G + +T VDGCA F+K DKF LL + + E+ Sbjct: 472 DNNNSDTNDTFTMMSYNTLCQHYATTK--MYKYTPSWALEWGFRRAALQEEVLHFKSDLVCMQEVETRTFHEFWVPVMQGFGYKGVFFNKTRSKTMSESDSKKVDGCATFYKTDKFELLHKQNFEY 595 HSP 2 Score: 33.113 bits (74), Expect = 2.388e-12 Identity = 18/66 (27.27%), Postives = 34/66 (51.52%), Query Frame = 2 Query: 728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWG---------NIPVVLAGDFNITLQSAIY 898 ++L N H+ ++P +VK Q+ L + + +K+ N +V+ GDFN T ++A+Y Sbjct: 635 KILFVNTHLHWDPAFNDVKTLQVGILLEELRTIMKKYHHTNSIDEIKNASMVICGDFNSTKENAVY 700 The following BLAST results are available for this feature:
BLAST of FC878236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878236 ID=FC878236; Name=FC878236; organism=Citrus clementina; type=EST; length=899bpback to top |