FC878236
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ENTBH (Probable glucose-repressible alcohol dehydrogenase transcriptional effector homolog OS=Enterocytozoon bieneusi (strain H348) GN=CCR4 PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 5.305e-12 Identity = 43/137 (31.39%), Postives = 62/137 (45.26%), Query Frame = 1 Query: 295 RHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYE---YMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVM------EKTGYAGCY-KRRTGDNVD-------GCAMFWKADKFRLLEQTSIEF 654 R WID S E +S ++NIL A N+ Y + RK ++ Q I N DI+C+QEVD ++ N +K Y G +++ D V G FWK +KF+L+EQ SI+F Sbjct: 153 RVWIDTVLKIDQSLETYSFGTFNILCSLYA-------SNLTYAPSWVINLECRKDILMQTFIAYNLDILCLQEVD--INVFNTFYKEQLAQKLDYDGVILPKKSFDKVTDQPKKFHGIVTFWKKNKFKLIEQVSIDF 280 HSP 2 Score: 41.5874 bits (96), Expect = 5.305e-12 Identity = 17/56 (30.36%), Postives = 31/56 (55.36%), Query Frame = 2 Query: 731 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898 ++V N+H+ +NP ++K+ Q + + EK+ + +VL GDFN S +Y Sbjct: 321 IIVANVHLYWNPEFNDIKILQTIIYLEEIEFLKEKYKHAHIVLQGDFNSLQNSHVY 376
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CN6LB_XENLA (CCR4-NOT transcription complex subunit 6-like-B OS=Xenopus laevis GN=cnot6l-B PE=2 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 6.861e-12 Identity = 40/138 (28.99%), Postives = 76/138 (55.07%), Query Frame = 1 Query: 295 RHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669 R WI + + I F+V+ +N+L DK A R LY + W RK+ I +E++ + DII +QEV+ +Y+ + + +++ GY G + ++ +VDGCA+F++ +KF L+++ ++EF + + Sbjct: 167 RPWITLKERDQILPSVPFTVMCFNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVSCDADIISLQEVETEQYYTLFMPALKERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQIAM 302 HSP 2 Score: 28.4906 bits (62), Expect = 6.861e-12 Identity = 18/77 (23.38%), Postives = 34/77 (44.16%), Query Frame = 2 Query: 698 LRQMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEK-----------WGNIPVVLAGDFNITLQSAI 895 ++ +++ + ++V N H+ ++P +VKL Q S + + EK +IP VL D N S + Sbjct: 338 MKPHHSSEKQLLMVANAHMHWDPEYSDVKLIQTMMFVSELKSIIEKAASRPGSPTPDSNSIPFVLCADLNSLPDSGV 414
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASPFU (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus fumigatus GN=ccr4 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.380e-12 Identity = 53/156 (33.97%), Postives = 69/156 (44.23%), Query Frame = 1 Query: 250 PLRRKPFDEPSPDVLRHWIDADPNPISSQER---FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672 PL P PD R WI D SS R +V+SYN L D +A + Y R + W R+ LI EL + DIIC+QE+D+ Y D V G A + VDGCA F+K KF LL++ I F + +R Sbjct: 295 PLTLMAVHLPPPD--RDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKGSKFILLDKQLINFGQTAVR 446 HSP 2 Score: 23.0978 bits (48), Expect = 7.380e-12 Identity = 12/41 (29.27%), Postives = 20/41 (48.78%), Query Frame = 2 Query: 728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850 R +V N H+ ++P +VKL Q L ++E + P Sbjct: 480 RFIVVNAHLYWDPAFKDVKLIQTAILMEELTKLSETYAKWP 520 HSP 3 Score: 20.4014 bits (41), Expect = 7.380e-12 Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 2 Query: 845 IPVVLAGDFNITLQSAIY 898 IP+++ GD N + SA Y Sbjct: 557 IPLLMCGDLNSSPGSAAY 574
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_COCIM (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Coccidioides immitis GN=CCR4 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.936e-11 Identity = 43/147 (29.25%), Postives = 65/147 (44.22%), Query Frame = 1 Query: 283 PDVLRHWIDADPNPISS-----QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672 P R W+ D +S +F+ ++YN L D+ A + Y R + W R+ L+ E+ G + DI+C+QE+D+ Y D V G A VDGCA F+K K+ LLE+ I F + +R Sbjct: 287 PPSNRDWLILDETGKNSANGGNDNKFTALTYNTLCDRYATNQQYGYAPSRA--LAWEFRRDLLLNEIRGHDADIVCLQEIDQGSYHGFFREQLAYNDYKGVYWPKGRAQGMPEEEAKLVDGCATFFKGSKYILLEKNMIHFGQTAVR 431 HSP 2 Score: 31.187 bits (69), Expect = 1.936e-11 Identity = 14/41 (34.15%), Postives = 24/41 (58.54%), Query Frame = 2 Query: 728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850 R++V N H+ ++P +VKL Q+ + +AEK+ IP Sbjct: 465 RLIVVNAHIYWDPAYKDVKLIQVAIMMEEVTQLAEKYVKIP 505
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASHGO (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ashbya gossypii GN=CCR4 PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 7.119e-11 Identity = 36/130 (27.69%), Postives = 66/130 (50.77%), Query Frame = 1 Query: 334 QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKTGYAGCYKRRT---------GDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQ 687 ++ F+++SYN L A +Y+ V + W+ R+ + E++ DIIC+QEV+ Y + L ++EK GY+G + +T VDGC +F+K +F + + +I+F ++ Q Sbjct: 395 KKSFTLLSYNTLCQHYATPK--MYRFVPSWALSWDYRREKLKDEVLAYQTDIICLQEVESKTYEEFWLPILEKQGYSGIFHAKTRARTMQSKDAKKVDGCCIFYKNSEFTAVFKDAIDFSSVWMKHKKFQ 522 HSP 2 Score: 32.3426 bits (72), Expect = 7.119e-11 Identity = 21/80 (26.25%), Postives = 41/80 (51.25%), Query Frame = 2 Query: 686 NFPLLRQMRNTKS-RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN---------IPVVLAGDFNITLQSAI 895 N L+ ++R+ ++ V V H+ ++P+ +VK Q+ + + + ++ G IP+V+ GDFN L SA+ Sbjct: 536 NVALIIKLRHERTGEHVWVVTTHLHWDPHFNDVKTFQVAVMLDYIEKLLKQHGGVGSPQDKKKIPLVICGDFNSQLDSAV 615
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNO6L_HUMAN (CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens GN=CNOT6L PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11 Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 1 Query: 295 RHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669 R WI + + I F+V+ YN+L DK A R LY + W RK+ I +E++ + DII +QEV+ +YF + L +++ GY G + ++ +VDGCA+F+K +KF L+++ ++EF + + Sbjct: 172 RPWITLKERDQILPSASFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAM 307 The following BLAST results are available for this feature:
BLAST of FC878236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878236 ID=FC878236; Name=FC878236; organism=Citrus clementina; type=EST; length=899bpback to top |