FC878236

Overview
NameFC878236
Unique NameFC878236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ENTBH (Probable glucose-repressible alcohol dehydrogenase transcriptional effector homolog OS=Enterocytozoon bieneusi (strain H348) GN=CCR4 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 5.305e-12
Identity = 43/137 (31.39%), Postives = 62/137 (45.26%), Query Frame = 1
Query:  295 RHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYE---YMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVM------EKTGYAGCY-KRRTGDNVD-------GCAMFWKADKFRLLEQTSIEF 654
            R WID       S E +S  ++NIL    A        N+ Y     +    RK ++ Q  I  N DI+C+QEVD   ++ N        +K  Y G    +++ D V        G   FWK +KF+L+EQ SI+F
Sbjct:  153 RVWIDTVLKIDQSLETYSFGTFNILCSLYA-------SNLTYAPSWVINLECRKDILMQTFIAYNLDILCLQEVD--INVFNTFYKEQLAQKLDYDGVILPKKSFDKVTDQPKKFHGIVTFWKKNKFKLIEQVSIDF 280          

HSP 2 Score: 41.5874 bits (96), Expect = 5.305e-12
Identity = 17/56 (30.36%), Postives = 31/56 (55.36%), Query Frame = 2
Query:  731 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            ++V N+H+ +NP   ++K+ Q        + + EK+ +  +VL GDFN    S +Y
Sbjct:  321 IIVANVHLYWNPEFNDIKILQTIIYLEEIEFLKEKYKHAHIVLQGDFNSLQNSHVY 376          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CN6LB_XENLA (CCR4-NOT transcription complex subunit 6-like-B OS=Xenopus laevis GN=cnot6l-B PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.861e-12
Identity = 40/138 (28.99%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  295 RHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669
            R WI   + + I     F+V+ +N+L DK A   R LY       + W  RK+ I +E++  + DII +QEV+  +Y+ + +  +++ GY G +  ++           +VDGCA+F++ +KF L+++ ++EF +  +
Sbjct:  167 RPWITLKERDQILPSVPFTVMCFNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVSCDADIISLQEVETEQYYTLFMPALKERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQIAM 302          

HSP 2 Score: 28.4906 bits (62), Expect = 6.861e-12
Identity = 18/77 (23.38%), Postives = 34/77 (44.16%), Query Frame = 2
Query:  698 LRQMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEK-----------WGNIPVVLAGDFNITLQSAI 895
            ++   +++ + ++V N H+ ++P   +VKL Q     S  + + EK             +IP VL  D N    S +
Sbjct:  338 MKPHHSSEKQLLMVANAHMHWDPEYSDVKLIQTMMFVSELKSIIEKAASRPGSPTPDSNSIPFVLCADLNSLPDSGV 414          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASPFU (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus fumigatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.380e-12
Identity = 53/156 (33.97%), Postives = 69/156 (44.23%), Query Frame = 1
Query:  250 PLRRKPFDEPSPDVLRHWIDADPNPISSQER---FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            PL       P PD  R WI  D    SS  R    +V+SYN L D +A +    Y   R   + W  R+ LI  EL   + DIIC+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  295 PLTLMAVHLPPPD--RDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKGSKFILLDKQLINFGQTAVR 446          

HSP 2 Score: 23.0978 bits (48), Expect = 7.380e-12
Identity = 12/41 (29.27%), Postives = 20/41 (48.78%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R +V N H+ ++P   +VKL Q   L      ++E +   P
Sbjct:  480 RFIVVNAHLYWDPAFKDVKLIQTAILMEELTKLSETYAKWP 520          

HSP 3 Score: 20.4014 bits (41), Expect = 7.380e-12
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  845 IPVVLAGDFNITLQSAIY 898
            IP+++ GD N +  SA Y
Sbjct:  557 IPLLMCGDLNSSPGSAAY 574          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_COCIM (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Coccidioides immitis GN=CCR4 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.936e-11
Identity = 43/147 (29.25%), Postives = 65/147 (44.22%), Query Frame = 1
Query:  283 PDVLRHWIDADPNPISS-----QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P   R W+  D    +S       +F+ ++YN L D+ A   +  Y   R   + W  R+ L+  E+ G + DI+C+QE+D+            Y D   V    G A          VDGCA F+K  K+ LLE+  I F +  +R
Sbjct:  287 PPSNRDWLILDETGKNSANGGNDNKFTALTYNTLCDRYATNQQYGYAPSRA--LAWEFRRDLLLNEIRGHDADIVCLQEIDQGSYHGFFREQLAYNDYKGVYWPKGRAQGMPEEEAKLVDGCATFFKGSKYILLEKNMIHFGQTAVR 431          

HSP 2 Score: 31.187 bits (69), Expect = 1.936e-11
Identity = 14/41 (34.15%), Postives = 24/41 (58.54%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R++V N H+ ++P   +VKL Q+  +      +AEK+  IP
Sbjct:  465 RLIVVNAHIYWDPAYKDVKLIQVAIMMEEVTQLAEKYVKIP 505          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASHGO (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ashbya gossypii GN=CCR4 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.119e-11
Identity = 36/130 (27.69%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  334 QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKTGYAGCYKRRT---------GDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQ 687
            ++ F+++SYN L    A     +Y+ V    + W+ R+  +  E++    DIIC+QEV+   Y +  L ++EK GY+G +  +T            VDGC +F+K  +F  + + +I+F    ++    Q
Sbjct:  395 KKSFTLLSYNTLCQHYATPK--MYRFVPSWALSWDYRREKLKDEVLAYQTDIICLQEVESKTYEEFWLPILEKQGYSGIFHAKTRARTMQSKDAKKVDGCCIFYKNSEFTAVFKDAIDFSSVWMKHKKFQ 522          

HSP 2 Score: 32.3426 bits (72), Expect = 7.119e-11
Identity = 21/80 (26.25%), Postives = 41/80 (51.25%), Query Frame = 2
Query:  686 NFPLLRQMRNTKS-RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN---------IPVVLAGDFNITLQSAI 895
            N  L+ ++R+ ++   V V   H+ ++P+  +VK  Q+  +    + + ++ G          IP+V+ GDFN  L SA+
Sbjct:  536 NVALIIKLRHERTGEHVWVVTTHLHWDPHFNDVKTFQVAVMLDYIEKLLKQHGGVGSPQDKKKIPLVICGDFNSQLDSAV 615          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CNO6L_HUMAN (CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens GN=CNOT6L PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  295 RHWIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669
            R WI   + + I     F+V+ YN+L DK A   R LY       + W  RK+ I +E++  + DII +QEV+  +YF + L  +++ GY G +  ++           +VDGCA+F+K +KF L+++ ++EF +  +
Sbjct:  172 RPWITLKERDQILPSASFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAM 307          
The following BLAST results are available for this feature:
BLAST of FC878236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CCR4_ENTBH5.305e-1231.39Probable glucose-repressible alcohol dehydrogenase... [more]
CN6LB_XENLA6.861e-1228.99CCR4-NOT transcription complex subunit 6-like-B OS... [more]
CCR4_ASPFU7.380e-1233.97Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_COCIM1.936e-1129.25Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASHGO7.119e-1127.69Glucose-repressible alcohol dehydrogenase transcri... [more]
CNO6L_HUMAN7.457e-1131.88CCR4-NOT transcription complex subunit 6-like OS=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA55AC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878236 ID=FC878236; Name=FC878236; organism=Citrus clementina; type=EST; length=899bp
AGAGAGTGGTTACTTGTGGATCAATCAATGAGGTCCGAAGCCACTTCCTC
CTCTTCTTGGCTCGGCCGGATCCCACCAACGGCCACCTCCGCGCCGAGCG
GCGGCTCCGGCAAGTGCCGGCACTTCATCTTCTTCTCCTCCTCCTGCTGC
AAGACTACAAACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTC
CTCATCATCATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACC
CTCTCCGACGTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCAC
TGGATCGACGCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGT
CGTGTCATATAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATT
TATATCAAAATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGG
TTAATATGCCAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCA
AGAGGTGGACAGGTATTTTGATATTCTGAATGTTATGGAGAAAACGGGAT
ATGCTGGTTGTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCG
ATGTTTTGGAAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGA
ATTTAAAGAGTTTGGCCTTCGTGAAAATGTGGCACAACTTTCCGCTTTTG
AGGCAGATGCGCAACACAAAATCAAGAAGAGTACTGGTTGGTAACATACA
CGTTCTTTATAATCCAAACCGAGGGGAAGTGAAATTAGGTCAAATTTGTT
TTCTTTCCTCAAGGGCACAAATTGTTGCAGAGAAATGGGGTAATATCCCT
GTTGTGCTTGCTGGTGACTTCAATATCACTCTTCAAAGTGCAATTTACA
back to top