FC878302

Overview
NameFC878302
Unique NameFC878302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  358 KTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASS---QHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLS 735
            ++ T + K    A  F+ + L   T +FS E  IG+G  G VYR +L DG+ + +K+ +  A     Q K+  F   +  + R+ H ++V L GYC    + LL+ +Y  NG L+D LH  + ++ + S
Sbjct:  469 RSGTSSMKHADKAEEFSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIKRGEVNAKMKKFQEKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDHLHDKNNVEKHSS 597          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  430 TNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWNT 744
            TNSF Q  +IG G  G VY+A LPDGK + +KKL        +  EF   V  + R +H N+V L+G+C      LLI  Y  NG+L   LH  ++    L W T
Sbjct:  731 TNSFDQANIIGCGGFGMVYKATLPDGKKVAIKKLSGDCGQIER--EFEAEVETLSRAQHPNLVLLRGFCFYKNDRLLIYSYMENGSLDYWLHERNDGPALLKWKT 833          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 37/116 (31.90%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  394 ARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLH-SDDELKNNLSW 738
            A+ F+   L+Q T  FS++  +G G    V++  L DG ++ VK+  K +  +    EF   ++ + R+ HA+++ L GYC    + LL+ E+ ++G+L+  LH  D  LK  L+W
Sbjct:  490 AQEFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHNELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGKDPNLKKRLNW 605          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: ACCR2_ARATH (Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  373 TAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWN 741
            TA      + F ++ L+  T+ F +   +G G  G VY+A L DG  + VK+ +        +  F   +  + +IRH NIV L GYC+  G+ LL+ EY  +GTLHD LH D    + L W+
Sbjct:  497 TAVSLGETKIFRLSELKDATHGFKEFNELGRGSFGFVYKAVLSDGIHVAVKRANAATIIHSNNRGFESELEILCKIRHNNIVNLLGYCSEMGERLLVYEYMPHGTLHDHLHGD---LSQLDWS 616          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: ACCR1_ARATH (Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  394 ARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWN 741
            A+ F ++ L+  TN F +   +G G  G VY+A L DG+ + VK+ +          EF   +  +  IRH NIV L GY    G+ LL+ EY  +GTLHD LHS     + LSW+
Sbjct:  505 AQVFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHTNTREFETELEILCNIRHCNIVNLLGYSTEMGERLLVYEYMPHGTLHDHLHSG---FSPLSWS 617          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  409 IASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLH-SDDELKNNLSW 738
            ++ L + T  F ++ +I  G  G++Y+ +L DG LL +K+L     SQ  + EF   +  +  +++ N+V L GYC  + + LL+ EY +NG L+D LH +D+E    L W
Sbjct:  293 LSDLMKATEEFKKDNIIATGRTGTMYKGRLEDGSLLMIKRLQ---DSQRSEKEFDAEMKTLGSVKNRNLVPLLGYCVANKERLLMYEYMANGYLYDQLHPADEESFKPLDW 400          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 1
Query:  343 EGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKL----DKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSW 738
            E T  ++  +T   F+         + + T  F  +YLIG G  G VY+A+LP+  ++ VKKL    D   S+     EFL  +  +  IRH N+V L G+C+      L+ EY   G+L  +L +DDE K  L W
Sbjct:  743 EHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDDEAK-KLDW 876          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  358 KTSTKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHD 696
            K S+K +      +SFT A L   T++F+    IG G  G VY+  L  G ++ +K+  +   S   + EFL  +  + R+ H N+V L G+C   G+ +L+ EY  NGTL D
Sbjct:  598 KRSSKASLKIEGVKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQE--GSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRD 708          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 41/105 (39.05%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  430 TNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSWNT 744
            T+SF+Q  +IG G  G VY+A LPDG  + +K+L     +   D EF   V  + R +H N+V L GYC      LLI  Y  NG+L   LH   +   +L W T
Sbjct:  740 TSSFNQANIIGCGGFGLVYKATLPDGTKVAIKRLS--GDTGQMDREFQAEVETLSRAQHPNLVHLLGYCNYKNDKLLIYSYMDNGSLDYWLHEKVDGPPSLDWKT 842          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  385 FTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSW 738
            +  +R F+   ++  T +F +  +IG G  G+VYR +LPDGK + VK    R  +Q   D F+  V+ + +IRH N+V  +G+C    + +L+ EY S G+L D L+     +++L+W
Sbjct:  590 WNASRIFSHKEIKSATRNFKE--VIGRGSFGAVYRGKLPDGKQVAVKVRFDR--TQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADHLYGPRSKRHSLNW 703          
The following BLAST results are available for this feature:
BLAST of FC878302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ACCR3_ARATH1.311e-1231.78Putative serine/threonine-protein kinase-like prot... [more]
PSKR1_ARATH1.712e-1240.00Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
CRI4_MAIZE1.712e-1231.90Putative receptor protein kinase CRINKLY4 OS=Zea m... [more]
ACCR2_ARATH1.712e-1234.96Serine/threonine-protein kinase-like protein CCR2 ... [more]
ACCR1_ARATH1.712e-1237.93Serine/threonine-protein kinase-like protein CCR1 ... [more]
Y5838_ARATH2.920e-1234.23Probably inactive leucine-rich repeat receptor-lik... [more]
Y4885_ARATH2.920e-1233.82Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH2.920e-1234.51Probable LRR receptor-like serine/threonine-protei... [more]
PSKR1_DAUCA3.813e-1239.05Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
Y5487_ARATH4.980e-1233.90Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA24CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878302 ID=FC878302; Name=FC878302; organism=Citrus clementina; type=EST; length=745bp
TGCATTTAGAGGCAACAACAGAGAGGAAGCCAGGGACATGGGACCTTGGC
CCTTCCAACCAATCAAATGGAGAAAGATGCATCTGTGAAGCCGAAGGAGG
ATCATCGATCAGAGATGAGAAGAATGGGAGCCATTCCACATGCACAGAAT
GAACAAGAGAGAAATAAACAAAGGATGAGCACAATACCTAGACGGGATGA
TCATGAGATAGACATGAGTTCACTAGATATGATGATGATGCCACCACCAC
CTCCTCCTCCCCCACCTCCACCTCCACCTCCTCCACCACCTCCTCCACCG
CCTGTTGTAGAGAAGGTCATTGTAAAGCCAATTGTGCCCGCTGAAGGAAC
TGCTGTGAAGACTTCCACTAAAACTGCAAAACCTTTCACAACTGCAAGGT
CTTTCACCATTGCATCCCTTCAACAATATACTAACAGCTTTTCTCAAGAA
TACCTTATAGGTGCTGGTATGCTGGGGAGTGTTTATAGGGCACAGCTTCC
TGATGGAAAGCTACTAACAGTCAAGAAACTGGACAAGAGGGCTTCAAGTC
AGCATAAGGATGATGAATTTCTTGAACTGGTGAACAATATTGATCGAATT
CGACATGCTAATATAGTCGGGCTCAAGGGTTACTGTGCATAGCATGGACA
ATGGCTTCTTATATAGGAGTATTGCAGTAACGGAACTCTGCATGATATGC
TACATTCAGATGATGAATTAAAAAATAATCTATCGTGGAACACCC
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