FC878379

Overview
NameFC878379
Unique NameFC878379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length900
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: GBB1_CRIGR (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Cricetulus griseus GN=GNB1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 46/163 (28.22%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  418 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPG--GGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            T  F+GH+ +V S++ +P D  L  +G  D     W + +G       GH+  ++ + F   G   A+G  D   +++D  +     T        G+  VS+   GR++LAG +D    +W+A +A    + +GH + V+C   T DG  + TGS D+ L++
Sbjct:  177 TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: GBB1_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Canis familiaris GN=GNB1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 46/163 (28.22%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  418 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPG--GGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            T  F+GH+ +V S++ +P D  L  +G  D     W + +G       GH+  ++ + F   G   A+G  D   +++D  +     T        G+  VS+   GR++LAG +D    +W+A +A    + +GH + V+C   T DG  + TGS D+ L++
Sbjct:  177 TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: GBB1_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus GN=GNB1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 46/163 (28.22%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  418 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPG--GGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            T  F+GH+ +V S++ +P D  L  +G  D     W + +G       GH+  ++ + F   G   A+G  D   +++D  +     T        G+  VS+   GR++LAG +D    +W+A +A    + +GH + V+C   T DG  + TGS D+ L++
Sbjct:  177 TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: CIAO1_IXOSC (Probable cytosolic iron-sulfur protein assembly protein OS=Ixodes scapularis GN=ISCW023049 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 50/163 (30.67%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  433 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLK--CTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNA---DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 897
            GH D V++VA +P+  T++A+ GGD     W +  G W  +   + GH+ +V  +++S  G+ LAS   DG   IW       +   TLEG    V+   W P GR +   S D TVW+W     +     ++ + H   V    + PD   + + S D T+R
Sbjct:   11 GHEDRVWNVAWNPS-GTILASCGGDKSIRLWGLEGGSWVCKSVLLDGHQRTVRGVSWSNCGRYLASSSFDGTTCIWRRQDDTFESCATLEGHENEVKACGWSPSGRFLATCSRDKTVWIWEVGEDEEFECASVQTCHSQDVKKVLWHPDRDELASASYDNTIR 172          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: LIS1_XENTR (Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.490e-14
Identity = 49/160 (30.63%), Postives = 73/160 (45.62%), Query Frame = 1
Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +  SGH   V  V   P  + +V T   D     W    GD+   ++GH DSV +++F   G+LLAS   D  +++WD        T+ G    V  V+  P G  +++ S D T+ MW       +  F+GH   V       DG  I + S+D T+RV
Sbjct:  102 YALSGHRSPVTRVIFHPVFSVMV-TASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260          

HSP 2 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 47/178 (26.40%), Postives = 79/178 (44.38%), Query Frame = 1
Query:  427 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSME--------------------GQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            F+GH + V  V  +  D TL+A+   D     W +   +  +E++ H+  V  ++++ E                    G  L SG  D  +++WD S G    TL G    V  V +HP G+ +L+ ++D T+ +W+      +   + H   VT  DF      + TGS D T++V
Sbjct:  230 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.490e-14
Identity = 49/160 (30.63%), Postives = 73/160 (45.62%), Query Frame = 1
Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +  SGH   V  V   P  + +V T   D     W    GD+   ++GH DSV +++F   G+LLAS   D  +++WD        T+ G    V  V+  P G  +++ S D T+ MW       +  F+GH   V       DG  I + S+D T+RV
Sbjct:  102 YALSGHRSPVTRVIFHPVFSVMV-TASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260          

HSP 2 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 47/178 (26.40%), Postives = 79/178 (44.38%), Query Frame = 1
Query:  427 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSME--------------------GQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            F+GH + V  V  +  D TL+A+   D     W +   +  +E++ H+  V  ++++ E                    G  L SG  D  +++WD S G    TL G    V  V +HP G+ +L+ ++D T+ +W+      +   + H   VT  DF      + TGS D T++V
Sbjct:  230 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: GBB1_PONAB (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Pongo abelii GN=GNB1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.490e-14
Identity = 46/163 (28.22%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  418 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPG--GGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            T  F+GH+ +V S++ +P D  L  +G  D     W + +G       GH+  ++ + F   G   A+G  D   +++D  +     T        G+  VS+   GR++LAG +D    +W+A +A    + +GH   V+C   T DG  + TGS D+ L++
Sbjct:  177 TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDDRVSCLGVTDDGMAVATGSWDSFLKI 338          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: CIAO1_DROWI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.252e-14
Identity = 61/215 (28.37%), Postives = 87/215 (40.47%), Query Frame = 1
Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGF-FWRINQGDWASEI---QGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKC--TLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNA------DRAAYLN----------------------------MF---------------SGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            H   GH   ++ VA  P   T  + G  +DK    W ++   W+++     GHK ++  + +S  GQ LAS   D    IW  SSG  +C  TLEG    V+ VSW   G ++   S D +VW+W        + AA LN                            MF               S H S+V   DF  DG+ + + SDD TL++
Sbjct:    8 HTLQGHKGRIWGVAWHPKGNTFASCG--EDKAIRIWSLSGNSWSTKTILSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSKSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKEILASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSIDFDADGERLVSCSDDTTLKI 220          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: CIAO1_DROAN (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila ananassae GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.252e-14
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = 1
Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGF-FWRINQGDWASEI---QGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKC--TLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNA---DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            H   GH   ++ VA  P      + G  +DK    W +N   W ++     GHK ++  + +S  GQ LAS   DG   IW  SSG  +C  TLEG    V+ VSW   G ++   S D +VW+W     D      + + H   V    + P  + + + S D T+++
Sbjct:    8 HTLQGHKGRIWGVAWHPKGNVFASCG--EDKAIRIWSLNGNTWTTKTILSDGHKRTIREIRWSPCGQYLASASFDGTTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKELLASASYDNTIKM 174          
BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.247e-14
Identity = 50/170 (29.41%), Postives = 76/170 (44.71%), Query Frame = 1
Query:  394 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGF-FWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            N +  D +     GHS  VYS + SP +  L++  G +DK    W ++        +GH   V +++FS  G   A+   D   ++W            G    V+ VS+HP G  V  GS D T  MW+      + +F GH + V      PDG+ + TGS+D  + V
Sbjct:  510 NDKDEDPTCKTLVGHSGTVYSTSFSPDNKYLLS--GSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINV 677          
The following BLAST results are available for this feature:
BLAST of FC878379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
GBB1_CRIGR1.907e-1428.22Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CANFA1.907e-1428.22Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_BOVIN1.907e-1428.22Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
CIAO1_IXOSC1.907e-1430.67Probable cytosolic iron-sulfur protein assembly pr... [more]
LIS1_XENTR2.490e-1430.63Lissencephaly-1 homolog OS=Xenopus tropicalis GN=p... [more]
LIS1A_XENLA2.490e-1430.63Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf... [more]
GBB1_PONAB2.490e-1428.22Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
CIAO1_DROWI3.252e-1428.37Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROAN3.252e-1429.59Probable cytosolic iron-sulfur protein assembly pr... [more]
TAF5_YEAST4.247e-1429.41Transcription initiation factor TFIID subunit 5 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA99CG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878379 ID=FC878379; Name=FC878379; organism=Citrus clementina; type=EST; length=900bp
CTGTTCTCAAATCCCTAAATTCCAATTTACAACTCATCTCTCTCCCTCGC
CTCTCTGCCTCCCGTTTCTCCCTCTCCTCACGGCGCAGAACCTCAGCTCA
GCCCCTCTCGGTTTCTTCCTCGTAAGCGTCTCTCCCTCGCGTCAGCACAG
CCCCTCCCCTCAGTCACGGTGACGCCGTCGTTGGCCCCTCACACACGGTC
ATCTTTGGTGCTGCAGCCTACAGGAAACACAATTAATTAACAGAACAAGA
TGAACAATCCAATCCACAACGAAGTCGAAGACGACCAAGGGGAGGTTTTT
CTCGATGAATCTGACATTATCCATGAGGTTACAGTAGATGATGAAGATCT
TCCTGATGTCGATGATGATGATGATCCAGGTTCAGATGCTGAAAACACTG
AACAACCTGATGATTCAACACACATATTCTCTGGTCATTCTGATGAAGTT
TATTCTGTTGCATGCAGCCCGACGGACGCTACATTAGTGGCAACTGGAGG
TGGAGATGACAAAGGGTTTTTTTGGAGGATTAATCAAGGAGATTGGGCTT
CTGAGATCCAAGGTCACAAGGATTCGGTTTCTAATTTGGCTTTTAGTATG
GAAGGACAGCTCCTTGCTTCGGGAGGGTTAGATGGACTTGTTCAAATCTG
GGATACATCGTCAGGAAATCTCAAATGCACTCTTGAAGGTCCTGGAGGAG
GCGTCGAGTGGGTCAGTTGGCATCCAAGAGGACGTATAGTGTTGGCTGGT
TCTGAGGATTCCACTGTCTGGATGTGGAATGCTGATAGAGCTGCCTATCT
TAATATGTTTTCAGGTCATGGTAGTAGCGTGACTTGCGGTGATTTTACCC
CTGATGGTAAAACAATCTGCACTGGTTCAGATGATGCGACTTTGAGGGTA
back to top