FC878391

Overview
NameFC878391
Unique NameFC878391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 49/192 (25.52%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  251 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT-VKLWTVDRPTS-VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW-NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 817
            ++A   D  +++Y+     T + ++    H+  +     +PT    ++ SS DD  +KLW  ++  +  + F+ H++ V   T+NP+ ++ F SAS D T++IW++        + AH+  +   D+    D   + + S D + K+WD +  +  +  L GH + V  V F P    ++ + S D TV +W
Sbjct:   72 VVAGADDMYIRVYNYN---TMDKVKVFEAHSDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP-ELPIIITGSEDGTVRIW 256          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR12_HUMAN (Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 70/248 (28.23%), Postives = 106/248 (42.74%), Query Frame = 2
Query:  206 DGVYDLAW--SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH---EHTREVHS--ADYNPTRRDSFITSSWDDTVKLWTV-------------DRP-------------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL--------IASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            D V D+AW   +S   LL++A  D ++ +++  +    N +++LH    H   V S   D + T+   F + SWD  +K+W+              +RP             T + T   H   V +  W+   ++  CSAS D T+R+WDV E GS                NK  +C+        +AS S D+ I++WD R     +  L+   H   V  VK+SP     L S S D  V LWD
Sbjct:  141 DVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNVE--RNKVKALHCCRGHAGSVDSIAVDGSGTK---FCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHMEAVSSVLWSD--AEEICSASWDHTIRVWDV-ESGSLKS---------TLTGNKVFNCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWD 371          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR12_BOVIN (Ribosome biogenesis protein WDR12 OS=Bos taurus GN=WDR12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 67/246 (27.24%), Postives = 104/246 (42.28%), Query Frame = 2
Query:  206 DGVYDLAW--SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH---EHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-------------DRP-------------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL--------IASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            D V D+AW   +S   LL++A  D ++ +++  +    N +++LH    H   V S   + T    F + SWD  +K+W+              +RP             T + T   H   + +  W+   ++  CSAS D T+++WDV E GS                NK  +C+        +AS S D+ I++WD R     +  L+   H   V  VK+SP     L S S D  V LWD
Sbjct:  141 DVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNVE--RNKVKALHCCRGHAGSVDSIAVDSTGT-KFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHKEAISSVLWSD--AEEICSASWDHTIKVWDV-ESGSLKS---------TLTGNKVFNCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNMVKLWD 371          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: UTP15_BOVIN (U3 small nucleolar RNA-associated protein 15 homolog OS=Bos taurus GN=UTP15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 67/256 (26.17%), Postives = 108/256 (42.19%), Query Frame = 2
Query:   23 KMPVFKTPFNGYS-VKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA 784
            K PV    F   S V FSP            N+ +  + R+H+       P  T     DTA      A       LL+A   DG V+++D +      P+R    HT+ VHS D+  T     + S  DD TVKLW +     + TFKEH+  V     +  ++D+F + S D T++++D R    ++I   H   + +         L+++    + +K+WD+      +  L  H   V  +  S   + LL+
Sbjct:   30 KTPVQIKEFGAVSKVDFSP--------QPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAY----CATFRQDGRLLVAGSEDGGVQLFDIS---GRAPLRQFEGHTKAVHSVDF--TADKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNTDLFVTGSYDHTVKMFDAR-TNQSVISVEHGQPVESVLLFPSGGLLVSAGG--RYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLS 265          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: PRP46_YEAST (Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae GN=PRP46 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 51/166 (30.72%), Postives = 79/166 (47.59%), Query Frame = 2
Query:  323 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            R ++ H   V     +P   + FIT S D T+K+W +       T   H   V +   + RH  +F S S D T++ WD+ +         H   +     +   D LIA+A  D  IK+WD+R  R+P+  L GH   + +V+ +P    +++S S D TV LWD
Sbjct:  133 RVINGHLGWVRCVAIDPVDNEWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDVAVSDRHPYLF-SVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLD-LIATAGRDSVIKLWDMRT-RIPVITLVGHKGPINQVQCTPVDPQVVSS-STDATVRLWD 294          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: PRP46_DEBHA (Pre-mRNA-splicing factor PRP46 OS=Debaryomyces hansenii GN=PRP46 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 51/211 (24.17%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  254 IAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-LVGRYDHHTE 868
            +   +D ++KI+D A   ++N   ++  H   V S   + +R     + S D TVK W ++R  S     +R +  H   +Y    +P   D+  +   D  +R+WD+R     M++  H  +I +   ++  D  I ++S+D +I++WD+R     +A L  H  ++R +   P     +  CS D +  L ++++    L+  + H  E
Sbjct:  138 VTGSSDSTIKIWDLA---SSNLKATITGHIMGVRSLAVS-SRYPYLFSGSEDKTVKCWDLERTNSSSGCQIRNYHGHVGGIYAMALHPE-LDLLFTGGRDSVIRVWDLRSRTEIMVLSGHRSDITSIA-SQIGDPQIITSSMDATIRLWDIRKATTQLA-LTHHSKSIRSMAMHPQE---MTMCSGDTSGNLKEWLLPGGELLNEFGHSGE 338          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: PRP46_CANAL (Pre-mRNA-splicing factor PRP46 OS=Candida albicans GN=PRP46 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 48/198 (24.24%), Postives = 97/198 (48.99%), Query Frame = 2
Query:  221 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS 793
            +A  E  +   +   AD ++KI+D       N +++ L  H   + S   +  +R  ++ S  +D +++ W ++R  S     +R++  H   VY+   +P   DV  S   DC +R+WD+R     M +  H  +I + +   Y+D  + ++S+D +I++WD+R  +  + + N H  ++R +K  P     ++  S
Sbjct:   91 IALDEITNKWYVTGSADSTIKIWDFE----NNSLKAVLTGHVLGIRSLCIS--KRHPYLFSGGEDKSLRCWDLERSNSDAGCQIRSYHGHLGGVYSIGLHPE-LDVLFSGGKDCVVRVWDIRSRVEAMTLLGHTNDITSIE-TDYNDPQVITSSMDGTIRLWDLRKSKTELLITN-HSKSIRSMKSHPKEATFVSGDS 279          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 47/182 (25.82%), Postives = 81/182 (44.51%), Query Frame = 2
Query:  320 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT 865
            ++ L  H+  V+     P      +T   D  V LW V +   + +   H   V +  +N    ++  + S   T++I+D+        +  H   I   D++ + +  +AS S D ++K+WDVR  +  I    GH   V  +KFSP  +  L + S D T+ LWD +    L   + +HT
Sbjct:    9 LQELVAHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVDSVKFNSSE-ELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGE-FVASGSTDTNVKLWDVRR-KGCIYTYKGHSDQVNMIKFSPDGK-WLVTASEDTTIKLWD-LTMGKLFQEFKNHT 185          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 50/197 (25.38%), Postives = 92/197 (46.70%), Query Frame = 2
Query:  236 SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT-VKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW-NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 817
            S    ++A   D  +++Y+     T + ++    HT  +     +PT    ++ SS DD  +KLW  D+     + F+ H++ V   T+NP+ ++ F SAS D T +IW +        +  H+  +   D+    D   + + S D + K+WD +  +  +  L GH + +  V F P    ++ + S D TV +W
Sbjct:   67 SRKQWVVAGADDMFIRVYNYN---TMDKVKVFEAHTDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFTLDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQT-KSCVQTLEGHTHNISAVCFHP-ELPIIITGSEDGTVRIW 256          
The following BLAST results are available for this feature:
BLAST of FC878391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
COB22_ARATH7.171e-1125.52Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
WDR12_HUMAN9.366e-1128.23Ribosome biogenesis protein WDR12 OS=Homo sapiens ... [more]
WDR12_BOVIN9.366e-1127.24Ribosome biogenesis protein WDR12 OS=Bos taurus GN... [more]
UTP15_BOVIN9.366e-1126.17U3 small nucleolar RNA-associated protein 15 homol... [more]
PRP46_YEAST9.366e-1130.72Pre-mRNA-splicing factor PRP46 OS=Saccharomyces ce... [more]
PRP46_DEBHA9.366e-1124.17Pre-mRNA-splicing factor PRP46 OS=Debaryomyces han... [more]
PRP46_CANAL9.366e-1124.24Pre-mRNA-splicing factor PRP46 OS=Candida albicans... [more]
KTNB1_STRPU9.366e-1125.82Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
COB21_ORYSJ9.366e-1125.38Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878391 ID=FC878391; Name=FC878391; organism=Citrus clementina; type=EST; length=877bp
CCACCGGCGAATAACAACACCAAAGATGCCCGTCTTCAAAACCCCATTTA
ACGGCTACTCCGTCAAATTCTCTCCCTTCTACGAGTCCCGTCTCGCCGTT
GCCACCGCCCAAAACTTCGGAATCCTCGGTAATGGCCGCGTCCACGTCCT
CGACCTCTCCCCCGCCGCTCCCGCTCTCACCGAACTAGTCGCCTTCGACA
CTGCCGACGGTGTTTACGACCTCGCATGGTCCGAATCCCACGACTCCCTC
CTAATCGCCGCCGTCGCCGATGGATCCGTTAAAATCTACGACACGGCCCT
CCCGCCAACGGCCAATCCCATCCGCTCCCTCCACGAGCACACTCGCGAAG
TCCACTCGGCCGATTATAACCCCACTCGACGTGATTCTTTCATCACATCG
TCCTGGGATGACACGGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGT
GCGAACATTTAAAGAACACGCGTATTGCGTGTACAACGCCACGTGGAACC
CGCGTCACAGCGACGTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGA
ATTTGGGATGTGAGAGAGATGGGCAGCACGATGATAATTCCGGCCCACGA
GTTTGAAATTTTAGCTTGTGATTGGAACAAGTACGATGACTGTTTAATTG
CGAGTGCTTCAGTTGATAAGAGTATTAAAATTTGGGATGTGAGGAACTAT
AGAGTTCCAATTGCTGTATTAAATGGACATGGCTATGCCGTGAGGAAAGT
GAAATTTTCACCGCACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACA
TGACTGTGTGCTTATGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGG
TATGATCATCACACTGAGTTTGCCGTT
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