FC878391
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11 Identity = 49/192 (25.52%), Postives = 95/192 (49.48%), Query Frame = 2 Query: 251 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT-VKLWTVDRPTS-VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW-NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 817 ++A D +++Y+ T + ++ H+ + +PT ++ SS DD +KLW ++ + + F+ H++ V T+NP+ ++ F SAS D T++IW++ + AH+ + D+ D + + S D + K+WD + + + L GH + V V F P ++ + S D TV +W Sbjct: 72 VVAGADDMYIRVYNYN---TMDKVKVFEAHSDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP-ELPIIITGSEDGTVRIW 256
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR12_HUMAN (Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 70/248 (28.23%), Postives = 106/248 (42.74%), Query Frame = 2 Query: 206 DGVYDLAW--SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH---EHTREVHS--ADYNPTRRDSFITSSWDDTVKLWTV-------------DRP-------------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL--------IASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820 D V D+AW +S LL++A D ++ +++ + N +++LH H V S D + T+ F + SWD +K+W+ +RP T + T H V + W+ ++ CSAS D T+R+WDV E GS NK +C+ +AS S D+ I++WD R + L+ H V VK+SP L S S D V LWD Sbjct: 141 DVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNVE--RNKVKALHCCRGHAGSVDSIAVDGSGTK---FCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHMEAVSSVLWSD--AEEICSASWDHTIRVWDV-ESGSLKS---------TLTGNKVFNCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWD 371
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR12_BOVIN (Ribosome biogenesis protein WDR12 OS=Bos taurus GN=WDR12 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 67/246 (27.24%), Postives = 104/246 (42.28%), Query Frame = 2 Query: 206 DGVYDLAW--SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLH---EHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-------------DRP-------------TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL--------IASASVDKSIKIWDVRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820 D V D+AW +S LL++A D ++ +++ + N +++LH H V S + T F + SWD +K+W+ +RP T + T H + + W+ ++ CSAS D T+++WDV E GS NK +C+ +AS S D+ I++WD R + L+ H V VK+SP L S S D V LWD Sbjct: 141 DVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNVE--RNKVKALHCCRGHAGSVDSIAVDSTGT-KFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHKEAISSVLWSD--AEEICSASWDHTIKVWDV-ESGSLKS---------TLTGNKVFNCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNMVKLWD 371
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: UTP15_BOVIN (U3 small nucleolar RNA-associated protein 15 homolog OS=Bos taurus GN=UTP15 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 67/256 (26.17%), Postives = 108/256 (42.19%), Query Frame = 2 Query: 23 KMPVFKTPFNGYS-VKFSPFYESRLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLA 784 K PV F S V FSP N+ + + R+H+ P T DTA A LL+A DG V+++D + P+R HT+ VHS D+ T + S DD TVKLW + + TFKEH+ V + ++D+F + S D T++++D R ++I H + + L+++ + +K+WD+ + L H V + S + LL+ Sbjct: 30 KTPVQIKEFGAVSKVDFSP--------QPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAY----CATFRQDGRLLVAGSEDGGVQLFDIS---GRAPLRQFEGHTKAVHSVDF--TADKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNTDLFVTGSYDHTVKMFDAR-TNQSVISVEHGQPVESVLLFPSGGLLVSAGG--RYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLS 265
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: PRP46_YEAST (Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae GN=PRP46 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 51/166 (30.72%), Postives = 79/166 (47.59%), Query Frame = 2 Query: 323 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820 R ++ H V +P + FIT S D T+K+W + T H V + + RH +F S S D T++ WD+ + H + + D LIA+A D IK+WD+R R+P+ L GH + +V+ +P +++S S D TV LWD Sbjct: 133 RVINGHLGWVRCVAIDPVDNEWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDVAVSDRHPYLF-SVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLD-LIATAGRDSVIKLWDMRT-RIPVITLVGHKGPINQVQCTPVDPQVVSS-STDATVRLWD 294
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: PRP46_DEBHA (Pre-mRNA-splicing factor PRP46 OS=Debaryomyces hansenii GN=PRP46 PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 51/211 (24.17%), Postives = 99/211 (46.92%), Query Frame = 2 Query: 254 IAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDA-LVGRYDHHTE 868 + +D ++KI+D A ++N ++ H V S + +R + S D TVK W ++R S +R + H +Y +P D+ + D +R+WD+R M++ H +I + ++ D I ++S+D +I++WD+R +A L H ++R + P + CS D + L ++++ L+ + H E Sbjct: 138 VTGSSDSTIKIWDLA---SSNLKATITGHIMGVRSLAVS-SRYPYLFSGSEDKTVKCWDLERTNSSSGCQIRNYHGHVGGIYAMALHPE-LDLLFTGGRDSVIRVWDLRSRTEIMVLSGHRSDITSIA-SQIGDPQIITSSMDATIRLWDIRKATTQLA-LTHHSKSIRSMAMHPQE---MTMCSGDTSGNLKEWLLPGGELLNEFGHSGE 338
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: PRP46_CANAL (Pre-mRNA-splicing factor PRP46 OS=Candida albicans GN=PRP46 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 48/198 (24.24%), Postives = 97/198 (48.99%), Query Frame = 2 Query: 221 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRS-LHEHTREVHSADYNPTRRDSFITSSWDD-TVKLWTVDRPTS-----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS 793 +A E + + AD ++KI+D N +++ L H + S + +R ++ S +D +++ W ++R S +R++ H VY+ +P DV S DC +R+WD+R M + H +I + + Y+D + ++S+D +I++WD+R + + + N H ++R +K P ++ S Sbjct: 91 IALDEITNKWYVTGSADSTIKIWDFE----NNSLKAVLTGHVLGIRSLCIS--KRHPYLFSGGEDKSLRCWDLERSNSDAGCQIRSYHGHLGGVYSIGLHPE-LDVLFSGGKDCVVRVWDIRSRVEAMTLLGHTNDITSIE-TDYNDPQVITSSMDGTIRLWDLRKSKTELLITN-HSKSIRSMKSHPKEATFVSGDS 279
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 47/182 (25.82%), Postives = 81/182 (44.51%), Query Frame = 2 Query: 320 IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT 865 ++ L H+ V+ P +T D V LW V + + + H V + +N ++ + S T++I+D+ + H I D++ + + +AS S D ++K+WDVR + I GH V +KFSP + L + S D T+ LWD + L + +HT Sbjct: 9 LQELVAHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVDSVKFNSSE-ELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGE-FVASGSTDTNVKLWDVRR-KGCIYTYKGHSDQVNMIKFSPDGK-WLVTASEDTTIKLWD-LTMGKLFQEFKNHT 185
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 50/197 (25.38%), Postives = 92/197 (46.70%), Query Frame = 2 Query: 236 SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDT-VKLWTVDRP-TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW-NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 817 S ++A D +++Y+ T + ++ HT + +PT ++ SS DD +KLW D+ + F+ H++ V T+NP+ ++ F SAS D T +IW + + H+ + D+ D + + S D + K+WD + + + L GH + + V F P ++ + S D TV +W Sbjct: 67 SRKQWVVAGADDMFIRVYNYN---TMDKVKVFEAHTDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFTLDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQT-KSCVQTLEGHTHNISAVCFHP-ELPIIITGSEDGTVRIW 256 The following BLAST results are available for this feature:
BLAST of FC878391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878391 ID=FC878391; Name=FC878391; organism=Citrus clementina; type=EST; length=877bpback to top |