FC878391

Overview
NameFC878391
Unique NameFC878391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: HAT2_KLULA (Histone acetyltransferase type B subunit 2 OS=Kluyveromyces lactis GN=HAT2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.063e-14
Identity = 54/188 (28.72%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  272 GSVKIYDTALPPTAN-PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV---RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            G V I+D  +    +  I S   H    +   +NPT     +++S D TV LW V    +    +TF  H   V +  W+   S +F + S D TL I D   +     +  +  F  LA  ++K  + L+A+A  D ++ ++D+R  + P+  + GH  +V  ++FSPH+  LL S   D  + +WD
Sbjct:  145 GIVYIFDRNIKEKDHGAIASFSYHKENGYGLAFNPTVSGQLLSASDDGTVALWDVTSTANKSPSQTFDVHTDIVNDCKWHEFQSSLFGTVSEDNTLIIHDTNSDRAIQKLSVSSAFNTLA--FSKRSENLLAAAGTDSNVYLYDLRRLQKPLHSMAGHEDSVTSLEFSPHQDGLLTSSGSDRRIIMWD 330          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.306e-14
Identity = 66/237 (27.85%), Postives = 108/237 (45.57%), Query Frame = 2
Query:  206 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW----------------NK---YDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH 859
            D V D+A+ ++   LL +  AD S+K++D     +   I+++H H   V S  + P   D  +++S D T+K+W V     V+T+  H   V     +   S +F + S D T+R+W        + +  HE  +    W                NK   +    +AS S DK+I+IWDV +  + +  L+GH   VR + F P  +  L S S D T+ +WD   +  +   Y H
Sbjct:  151 DSVQDVAF-DAQGKLLASCSADLSIKLWD--FQQSYECIKTMHGHDHNVSSVAFVPAG-DYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGS-IFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDV-SVGLCLLTLSGHDNWVRGLAFHPGGK-YLVSASDDKTIRVWDLRNKRCMKTLYAH 380          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.306e-14
Identity = 65/215 (30.23%), Postives = 99/215 (46.05%), Query Frame = 2
Query:  176 LTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            L E+VA  +   V  L   +S   LL     D  V I+  + P   N I SL  HT  V    +N +  +  +  S   +++LW ++    +RT   H   + +  ++P   +   S S D  +++WDVR  G       H  + + C     D   +ASAS D ++K+WD+   ++ I     H  AV  V+F P+   LLAS S D TV LWD
Sbjct:   13 LQEIVAHSS--NVSSLVLGKSSGRLLATGGEDCRVNIWAVSKP---NCIMSLTGHTSAVGCIQFNSSE-ERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPM-GEYLASGSVDSNIKLWDVRRKGCVFRYKGHT-QAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKM-ITEFTSHTSAVNVVQFHPNEY-LLASGSADRTVKLWD 217          

HSP 2 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 56/187 (29.95%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  308 TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC-SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHT 865
            T+  ++ +  H+  V S     +      T   D  V +W V +P  + +   H   V    +N     V   S SG  +LR+WD+        +  H+  I + D++   + L AS SVD +IK+WDVR  +  +    GH  AVR + FSP  +  LAS S D TV LWD ++   ++  +  HT
Sbjct:    9 TSWKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSG--SLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYL-ASGSVDSNIKLWDVRR-KGCVFRYKGHTQAVRCLAFSPDGK-WLASASDDSTVKLWD-LIAGKMITEFTSHT 189          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: LIS1_XENTR (Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 6.930e-14
Identity = 64/225 (28.44%), Postives = 101/225 (44.89%), Query Frame = 2
Query:  206 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW---NKYDDC----------------LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 823
            D V D+++  S   LL +  AD ++K++D         IR++H H   V S    P   D  +++S D T+K+W V     V+TF  H   V     N +   +  S S D T+R+W V        +  HE  +    W   + Y                    + S S DK+IK+WD+ +  + +  L GH   VR V+F P  + +L SC+ D T+ +WD+
Sbjct:  151 DSVQDISFDHS-GKLLASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVAIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDI-SIGMCLMTLVGHDNWVRGVQFHPGGKFIL-SCADDKTIRIWDY 367          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 6.930e-14
Identity = 64/225 (28.44%), Postives = 101/225 (44.89%), Query Frame = 2
Query:  206 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW---NKYDDC----------------LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 823
            D V D+++  S   LL +  AD ++K++D         IR++H H   V S    P   D  +++S D T+K+W V     V+TF  H   V     N +   +  S S D T+R+W V        +  HE  +    W   + Y                    + S S DK+IK+WD+ +  + +  L GH   VR V+F P  + +L SC+ D T+ +WD+
Sbjct:  151 DSVQDISFDHS-GKLLASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVAIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDI-SIGMCLMTLVGHDNWVRGVQFHPGGKFIL-SCADDKTIRIWDY 367          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: HAT2_CRYNE (Histone acetyltransferase type B subunit 2 OS=Cryptococcus neoformans GN=HAT2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.930e-14
Identity = 47/182 (25.82%), Postives = 82/182 (45.05%), Query Frame = 2
Query:  212 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--------------TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD-VRNYRVP 709
            V D+ W   ++++  +   DG + I+DT    TA     +  H  E++   + P+    F+T S D+T+ LW + +  T   +F+ H   V   +W+P     F SAS D  + IWD+  +G+                +   H  ++    W+      IASAS D  +++W+  R+ R P
Sbjct:  243 VADVEWHPKNENMFGSVSDDGQIMIWDTRSDNTAKASSQVQGHNAEINCISFAPSSEYLFLTGSSDNTIALWDLRKLSTKHHSFEAHTNDVLQLSWSPTSPVHFASASADRRVHIWDLDAIGAEQTPDDAEDGPPELLFVHGGHTSKVCDISWSPSSPWTIASASEDNILQVWEPSRHLRTP 424          

HSP 2 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 55/227 (24.23%), Postives = 91/227 (40.09%), Query Frame = 2
Query:  170 PALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-------VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI---IPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            P   EL+A  T  G   +     H+S    A A+G  K           P   L   T+E +   +N  +    +++S D T+  W +   +        +R +  H+  V +  W+P++ ++F S S D  + IWD R   +      +  H  EI    +    + L  + S D +I +WD+R           H   V ++ +SP      AS S D  V +WD
Sbjct:  147 PQNPELIATKTVTGEVYVFDRTKHES---KAPANGECK-----------PDIRLKGQTKEGYGLSWNALKEGHILSASEDTTIGHWDIQGYSKQDPSLQPLRLYTGHSAYVADVEWHPKNENMFGSVSDDGQIMIWDTRSDNTAKASSQVQGHNAEINCISFAPSSEYLFLTGSSDNTIALWDLRKLSTKHHSFEAHTNDVLQLSWSPTSPVHFASASADRRVHIWD 359          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: SEC31_CHAGB (Protein transport protein SEC31 OS=Chaetomium globosum GN=SEC31 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.051e-14
Identity = 56/234 (23.93%), Postives = 106/234 (45.30%), Query Frame = 2
Query:  149 LDLSPAAPALTELVAFDTADGVYDLAW---SESHDSLLIA-AVADGSVKIYDTA--LPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLW-TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS---IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            L+L P A   TE          YD+AW   S+ H   ++A A+ DGS++++D A  L      +    +HT  + +  +NP R     T+     + +W T D  T+ R     A+ +    WN + S++  + S    + +WD++   +++ +  +   + A  W+  +   + +A+ D +   I +W++RN + P   L GH   +  + +      LL SC  D    +W+
Sbjct:   56 LELQPVASISTE-------SRFYDIAWGAPSDEHPRGVVAGAMEDGSLQLWDAAKLLAGEEAVMSRDTKHTGPIKALQFNPLRPQVLATAGSKGELFVWDTNDTSTAFRLGTAAAHDIDCVAWNRKVSNILATGSAGGFVTVWDLKTKKASLTLNNNRKPVSAIAWDPTNSTNLLTATSDDNTPLILLWNLRNSQAPEKTLQGHDQGILSLSWCQQDPGLLISCGKDNRTLVWN 282          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR24_CHICK (WD repeat-containing protein 24 OS=Gallus gallus GN=WDR24 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 48/196 (24.49%), Postives = 90/196 (45.92%), Query Frame = 2
Query:  242 DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS-TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCS--YDMTVCLWD 820
            ++LL  A  +G V  ++   P      +   EH R V+   ++PT     ++ S D  +K + + +  SV TF   +  V +  ++ R    F +   +  +++WD+R       +  AH   +  CDW+  D   +A+   DK +K+WD+   R           +V +VK+ P  ++ +A+CS   D  + +WD
Sbjct:    3 ENLLATAATNGVVVTWNLGKPSRNKQDQLFTEHKRTVNKVCFHPTEVYMLLSGSQDGYMKCFDLRKKDSVSTFSGQSESVRDVQFSIRDYFTFAATFENGNVQLWDIRRPDRYERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMNTTRAKEIYCVQTIASVARVKWRPECKHHIATCSMMVDHNIYVWD 198          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: SEC31_NEUCR (Protein transport protein sec-31 OS=Neurospora crassa GN=sec-31 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 49/234 (20.94%), Postives = 98/234 (41.88%), Query Frame = 2
Query:  149 LDLSPAAPALTELVAFDTADGVYDLAWSESHDS----LLIAAVADGSVKIYDTALPPTANP--IRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS---IKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            LD       L  + +       YD+AW + +D     ++  A+ +GS+ ++D           I    +HT  + +  +NP R     T+     + +W V D     R     A+ +    WNP+ +++  +      + +WD++   +++ +  H   + A  W+  +   + +AS D +   I +W++RN + P   L GH   +  + +      LL SC  D    +W+
Sbjct:   49 LDSQEQGLELQPIASITAESRFYDIAWGQPNDEHPRGVIAGAMENGSLDLWDAEKLIAGEDALISRTTKHTGPIKALQFNPLRPQVLATAGAKGELFVWDVNDTSAPFRLGTAAAHDIDCLAWNPKVANILATGGAGGFVTVWDLKTKKASLTLNNHRKAVSAIAWDPENSTKLLTASSDDTAPVILLWNLRNSQAPEKTLQGHDQGILSLSWCQQDAGLLLSCGKDNRTLIWN 282          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: LIS1B_XENLA (Lissencephaly-1 homolog B OS=Xenopus laevis GN=pafah1b1-B PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 63/225 (28.00%), Postives = 101/225 (44.89%), Query Frame = 2
Query:  206 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW---NKYDDC----------------LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 823
            D V D+++  S   LL +  AD ++K++D         +R++H H   V S    P   D  +++S D T+K+W V     V+TF  H   V     N +   +  S S D T+R+W V        +  HE  +    W   + Y                    + S S DK+IK+WD+ +  + +  L GH   VR V+F P  + +L SC+ D T+ +WD+
Sbjct:  151 DSVQDISFDHS-GKLLASCSADMTIKLWDFQ---GFECLRTMHGHDHNVSSVAIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKRSGKPGPFLLSGSRDKTIKMWDI-SIGMCLMTLVGHDNWVRGVQFHPGGKFIL-SCADDKTIRIWDY 367          
The following BLAST results are available for this feature:
BLAST of FC878391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
HAT2_KLULA4.063e-1428.72Histone acetyltransferase type B subunit 2 OS=Kluy... [more]
LIS1_DROME5.306e-1427.85Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
KTNB1_DANRE5.306e-1430.23Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
LIS1_XENTR6.930e-1428.44Lissencephaly-1 homolog OS=Xenopus tropicalis GN=p... [more]
LIS1A_XENLA6.930e-1428.44Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf... [more]
HAT2_CRYNE6.930e-1425.82Histone acetyltransferase type B subunit 2 OS=Cryp... [more]
SEC31_CHAGB9.051e-1423.93Protein transport protein SEC31 OS=Chaetomium glob... [more]
WDR24_CHICK1.182e-1324.49WD repeat-containing protein 24 OS=Gallus gallus G... [more]
SEC31_NEUCR1.182e-1320.94Protein transport protein sec-31 OS=Neurospora cra... [more]
LIS1B_XENLA1.182e-1328.00Lissencephaly-1 homolog B OS=Xenopus laevis GN=paf... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878391 ID=FC878391; Name=FC878391; organism=Citrus clementina; type=EST; length=877bp
CCACCGGCGAATAACAACACCAAAGATGCCCGTCTTCAAAACCCCATTTA
ACGGCTACTCCGTCAAATTCTCTCCCTTCTACGAGTCCCGTCTCGCCGTT
GCCACCGCCCAAAACTTCGGAATCCTCGGTAATGGCCGCGTCCACGTCCT
CGACCTCTCCCCCGCCGCTCCCGCTCTCACCGAACTAGTCGCCTTCGACA
CTGCCGACGGTGTTTACGACCTCGCATGGTCCGAATCCCACGACTCCCTC
CTAATCGCCGCCGTCGCCGATGGATCCGTTAAAATCTACGACACGGCCCT
CCCGCCAACGGCCAATCCCATCCGCTCCCTCCACGAGCACACTCGCGAAG
TCCACTCGGCCGATTATAACCCCACTCGACGTGATTCTTTCATCACATCG
TCCTGGGATGACACGGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGT
GCGAACATTTAAAGAACACGCGTATTGCGTGTACAACGCCACGTGGAACC
CGCGTCACAGCGACGTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGA
ATTTGGGATGTGAGAGAGATGGGCAGCACGATGATAATTCCGGCCCACGA
GTTTGAAATTTTAGCTTGTGATTGGAACAAGTACGATGACTGTTTAATTG
CGAGTGCTTCAGTTGATAAGAGTATTAAAATTTGGGATGTGAGGAACTAT
AGAGTTCCAATTGCTGTATTAAATGGACATGGCTATGCCGTGAGGAAAGT
GAAATTTTCACCGCACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACA
TGACTGTGTGCTTATGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGG
TATGATCATCACACTGAGTTTGCCGTT
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