FC878403
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.029e-12 Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1 Query: 349 SPDAFATIIGGINQRSRRGA-----------RGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 627 S D +T+IG N R RR GLD ++ + ++ K LECAVCL++ D + R++P+C+H FH+DCID W +H+TCP+CR Sbjct: 64 SDDPGSTVIGR-NPRRRRFVFAQSQEDPLHNAGLDSKILQSIHVVVFKCTDF----KDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCR 162
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12 Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 1 Query: 256 MAIVTVILVSVFFILGFFSV----YIRQCTERGRNSPDAFATIIGGINQRSR----RGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ--------PGETPSSFIPVLNPDVGSSRLEQGSDN 726 + I+ +L ++ +LG +V ++R+ R T+ G Q + +GL V+ + P +S E + ECA+CL EF + LR++P+C H FH+ CID WL +H++CP CR LV PG + S P++ R++QG D+ Sbjct: 31 VVILAALLCALICVLGLIAVSRCVWLRRLAAGNR-------TVSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSP--ESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGL--ESEPEI-EIRIKQGEDD 191
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.994e-12 Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1 Query: 466 RELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642 REL + S ECAVCL + ++ RL+P C+H FH C D WLS H CPVCRA L P Sbjct: 93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELAP 151
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.911e-12 Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 496 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642 +C+VCL ++ + L+ IP C H FHMDCID WL++H TCP+CR L+P Sbjct: 99 QCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIP 147
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12 Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 406 ARGLDDSVINTFPTFLY-SAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639 A GL + P LY S + ++K + EC +CL +F D E +R++PKC+H FH+ CID WL + ++CP CR +L+ Sbjct: 86 ATGLKKQALKQIPVGLYGSGIIDMK----ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12 Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = 1 Query: 241 KFNGTMAIVTVILVSVFFILGFFSVYI-RQCTERGR-----NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636 + +G + L SV ++YI R C R +SPD R R G GLD + I + P L RE + EC +CL F + E ++++P CSH +H +C+D WL ++CP+CR ++ Sbjct: 27 QIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHASSPDRLT--------RCRSG--GLDPAEIRSLPVVLCR--RERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12 Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 630 G +SP A AT R +GLD SVI++ P F+Y E + + EC +CL + + R + C H FH++CID WLS+H+TCP+CR+ Sbjct: 97 GVSSPAATAT----------RDDKGLDSSVISSIPLFVYEENEEEEDEEE--ECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRS 181
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12 Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 403 GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636 G++GL +++ P + L C+VCL +F ET+R +P C H+FH+ CID WL H +CP+CR +L Sbjct: 159 GSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11 Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 1 Query: 340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSF 669 G N D T + +NQ G D I PT + E +G G LEC VC ++ E++R +P C+H+FH DCI WL H+TCPVCR +L Q PG T +F Sbjct: 180 GANGLDTIITQL--LNQFENTGPPPADTEKIQALPTI---QITEEHVGSG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNPPGLTEMTF 288
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11 Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1 Query: 409 RGLDDSVINTFPTFLYSAVRELKIGKG----SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642 +GL + + P ++A S ECA+CL +F D E +R++P C H FH++CID WL + ++CP CR L P Sbjct: 68 KGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149 The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bpback to top |