FC878403

Overview
NameFC878403
Unique NameFC878403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.029e-12
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  349 SPDAFATIIGGINQRSRRGA-----------RGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 627
            S D  +T+IG  N R RR              GLD  ++ +    ++         K  LECAVCL++  D +  R++P+C+H FH+DCID W  +H+TCP+CR
Sbjct:   64 SDDPGSTVIGR-NPRRRRFVFAQSQEDPLHNAGLDSKILQSIHVVVFKCTDF----KDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCR 162          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 1
Query:  256 MAIVTVILVSVFFILGFFSV----YIRQCTERGRNSPDAFATIIGGINQRSR----RGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ--------PGETPSSFIPVLNPDVGSSRLEQGSDN 726
            + I+  +L ++  +LG  +V    ++R+     R       T+ G   Q  +       +GL   V+ + P   +S   E    +   ECA+CL EF   + LR++P+C H FH+ CID WL +H++CP CR  LV          PG + S       P++   R++QG D+
Sbjct:   31 VVILAALLCALICVLGLIAVSRCVWLRRLAAGNR-------TVSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSP--ESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGL--ESEPEI-EIRIKQGEDD 191          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.994e-12
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query:  466 RELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642
            REL +   S ECAVCL +    ++ RL+P C+H FH  C D WLS H  CPVCRA L P
Sbjct:   93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELAP 151          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.911e-12
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  496 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642
            +C+VCL ++   + L+ IP C H FHMDCID WL++H TCP+CR  L+P
Sbjct:   99 QCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIP 147          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  406 ARGLDDSVINTFPTFLY-SAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            A GL    +   P  LY S + ++K    + EC +CL +F D E +R++PKC+H FH+ CID WL + ++CP CR +L+
Sbjct:   86 ATGLKKQALKQIPVGLYGSGIIDMK----ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = 1
Query:  241 KFNGTMAIVTVILVSVFFILGFFSVYI-RQCTERGR-----NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636
            + +G      + L SV       ++YI R C  R       +SPD           R R G  GLD + I + P  L    RE    +   EC +CL  F + E ++++P CSH +H +C+D WL   ++CP+CR ++
Sbjct:   27 QIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHASSPDRLT--------RCRSG--GLDPAEIRSLPVVLCR--RERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 1
Query:  340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 630
            G +SP A AT          R  +GLD SVI++ P F+Y    E +  +   EC +CL  +   +  R +  C H FH++CID WLS+H+TCP+CR+
Sbjct:   97 GVSSPAATAT----------RDDKGLDSSVISSIPLFVYEENEEEEDEEE--ECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRS 181          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  403 GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636
            G++GL   +++  P    +    L        C+VCL +F   ET+R +P C H+FH+ CID WL  H +CP+CR +L
Sbjct:  159 GSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSF 669
            G N  D   T +  +NQ    G    D   I   PT     + E  +G G LEC VC  ++   E++R +P C+H+FH DCI  WL  H+TCPVCR +L  Q      PG T  +F
Sbjct:  180 GANGLDTIITQL--LNQFENTGPPPADTEKIQALPTI---QITEEHVGSG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNPPGLTEMTF 288          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1
Query:  409 RGLDDSVINTFPTFLYSAVRELKIGKG----SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642
            +GL    + + P   ++A             S ECA+CL +F D E +R++P C H FH++CID WL + ++CP CR  L P
Sbjct:   68 KGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149          
The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL1M_ARATH1.029e-1236.54RING-H2 finger protein ATL1M OS=Arabidopsis thalia... [more]
ATL1B_ARATH2.293e-1228.90RING-H2 finger protein ATL1B OS=Arabidopsis thalia... [more]
ATL5J_ARATH2.994e-1252.54RING-H2 finger protein ATL5J OS=Arabidopsis thalia... [more]
ATL1G_ARATH3.911e-1253.06RING-H2 finger protein ATL1G OS=Arabidopsis thalia... [more]
ATL3C_ARATH5.107e-1240.51RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL3D_ARATH6.670e-1230.43RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
ATL5O_ARATH8.712e-1239.18RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]
ATL4M_ARATH8.712e-1237.18RING-H2 finger protein ATL4M OS=Arabidopsis thalia... [more]
RN126_XENTR1.138e-1137.93RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
ATL2A_ARATH1.138e-1136.59RING-H2 finger protein ATL2A OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA94CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bp
ACAAATTTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACTAT
AACTACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGA
GCCGTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTT
CTTTTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAAC
TCCACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACG
GTACTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTG
GGCTTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAG
CCCTGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCA
GAGGGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTC
CTCTACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATG
CGCGGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATAC
CAAAGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCT
GCTCATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGG
CGAAACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGA
GTCGATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGAT
GTGCAAAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAATCAGAA
AAGGCCACCTAGATCGAGATCGATAGGGTGGAGGAGGCCGTCCGGTTGGT
TTCCAGTTCACACTCCCCCGGTCACTCAGTGGTCCCACCCGGG
back to top