FC878420

Overview
NameFC878420
Unique NameFC878420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_AETGR (50S ribosomal protein L16, chloroplastic OS=Aethionema grandiflora GN=rpl16 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGR+ G + RGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_AETCO (50S ribosomal protein L16, chloroplastic OS=Aethionema cordifolium GN=rpl16 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGR+ G + RGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CARPA (50S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGR+ G + RGN ICFGRYALQALEP WIT+RQIEAGRRAM RN++RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRLKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRNIRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_PHAAO (50S ribosomal protein L16, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl16 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWITARQIEAGRRAM R  +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISCRGNHICFGRYALQALEPAWITARQIEAGRRAMTRYARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_IPOPU (50S ribosomal protein L16, chloroplastic OS=Ipomoea purpurea GN=rpl16 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G +S GN ICFG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISSGGNHICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_ILLOL (50S ribosomal protein L16, chloroplastic OS=Illicium oligandrum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM R  +RGG+
Sbjct:    1 MLSNPKRTRFRKQHRGRMKGVSYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGR 64          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F K HRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CUSOB (50S ribosomal protein L16, plastid OS=Cuscuta obtusiflora GN=rpl16 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PK+ +F +QHRGRM G +SRGN ICFG+Y LQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKKTRFRRQHRGRMKGLSSRGNQICFGKYGLQALEPAWITSRQIEAGRRAMTRNARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_BUXMI (50S ribosomal protein L16, chloroplastic OS=Buxus microphylla GN=rpl16 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEP WIT+RQIEAGRRAM R  +RGGK
Sbjct:    1 MLSNPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRYARRGGK 64          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_SOYBN (50S ribosomal protein L16, chloroplastic OS=Glycine max GN=rpl16 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.289e-20
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  P+R +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGG+
Sbjct:    1 MLSPQRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQ 63          
The following BLAST results are available for this feature:
BLAST of FC878420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_AETGR4.431e-2174.6050S ribosomal protein L16, chloroplastic OS=Aethio... [more]
RK16_AETCO4.431e-2174.6050S ribosomal protein L16, chloroplastic OS=Aethio... [more]
RK16_CARPA5.786e-2173.0250S ribosomal protein L16, chloroplastic OS=Carica... [more]
RK16_PHAAO7.557e-2176.1950S ribosomal protein L16, chloroplastic OS=Phalae... [more]
RK16_IPOPU7.557e-2174.6050S ribosomal protein L16, chloroplastic OS=Ipomoe... [more]
RK16_ILLOL7.557e-2173.4450S ribosomal protein L16, chloroplastic OS=Illici... [more]
RK16_MORIN9.870e-2174.6050S ribosomal protein L16, chloroplastic OS=Morus ... [more]
RK16_CUSOB9.870e-2171.4350S ribosomal protein L16, plastid OS=Cuscuta obtu... [more]
RK16_BUXMI9.870e-2173.4450S ribosomal protein L16, chloroplastic OS=Buxus ... [more]
RK16_SOYBN1.289e-2074.6050S ribosomal protein L16, chloroplastic OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878420 ID=FC878420; Name=FC878420; organism=Citrus clementina; type=EST; length=873bp
AAAGATTTCAAGAAAAGTTTGATAGAAAGGGTTTGTTCAGGAAGAATCGA
AAAAGGGGTTTTTAAGATAACAAAGCAGTGCTAATAGCACCACCCCTGTT
CTTATCCCCCTCCATTGAAACCCTAAATTCCTCGTATCATATTTTCATGG
CAATCGCTTCAATTCTCAACTCAAATCGGCTGCTTCTGTCAAAGCGAATT
GTAAATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCT
TAGTTTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTC
AGGCTAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGC
AGCGAGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACA
ATCCGTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGA
ATCCGAATCCGAATCCGAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTC
TTTTTCGTTTCGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAAT
GACTAGTCTCCAACAGAAGGTTCTGGATCTTAGTCATTTACTAACGGAGA
CAACAAAATCATTATTCATCGGACACGACACTCAACGTTGGATCTCTGAT
TATTCACCCGTGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACG
AATAAAGTTTCCCAAACAACACAGAGGAAGAATGACGGGAAAAGCCAGTC
GAGGAAATCTTATTTGCTTCGGGAGGTATGCTCTTCAAGCGCTCGAACCC
GCCTGGATCACAGCCAGACAAATCGAAGCGGGGCGCCGAGCAATGGTACG
GAATGTCAAGCGCGGTGGAAAAA
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