FC878420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_AETGR (50S ribosomal protein L16, chloroplastic OS=Aethionema grandiflora GN=rpl16 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21 Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGR+ G + RGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_AETCO (50S ribosomal protein L16, chloroplastic OS=Aethionema cordifolium GN=rpl16 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21 Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGR+ G + RGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CARPA (50S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21 Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGR+ G + RGN ICFGRYALQALEP WIT+RQIEAGRRAM RN++RGGK Sbjct: 1 MLSPKRTRFRKQHRGRLKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRNIRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_PHAAO (50S ribosomal protein L16, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl16 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21 Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWITARQIEAGRRAM R +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISCRGNHICFGRYALQALEPAWITARQIEAGRRAMTRYARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_IPOPU (50S ribosomal protein L16, chloroplastic OS=Ipomoea purpurea GN=rpl16 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21 Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G +S GN ICFG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISSGGNHICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_ILLOL (50S ribosomal protein L16, chloroplastic OS=Illicium oligandrum GN=rpl16 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21 Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 3 Query: 681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM R +RGG+ Sbjct: 1 MLSNPKRTRFRKQHRGRMKGVSYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGR 64
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21 Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F K HRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RN +RGGK Sbjct: 1 MLSPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CUSOB (50S ribosomal protein L16, plastid OS=Cuscuta obtusiflora GN=rpl16 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21 Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PK+ +F +QHRGRM G +SRGN ICFG+Y LQALEPAWIT+RQIEAGRRAM RN +RGGK Sbjct: 1 MLSPKKTRFRRQHRGRMKGLSSRGNQICFGKYGLQALEPAWITSRQIEAGRRAMTRNARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_BUXMI (50S ribosomal protein L16, chloroplastic OS=Buxus microphylla GN=rpl16 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21 Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3 Query: 681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEP WIT+RQIEAGRRAM R +RGGK Sbjct: 1 MLSNPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRYARRGGK 64
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_SOYBN (50S ribosomal protein L16, chloroplastic OS=Glycine max GN=rpl16 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.289e-20 Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + P+R +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGG+ Sbjct: 1 MLSPQRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQ 63 The following BLAST results are available for this feature:
BLAST of FC878420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878420 ID=FC878420; Name=FC878420; organism=Citrus clementina; type=EST; length=873bpback to top |