FC878440

Overview
NameFC878440
Unique NameFC878440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD22_MOUSE (ER lumen protein retaining receptor 2 OS=Mus musculus GN=Kdelr2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.582e-21
Identity = 64/220 (29.09%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y+                +Y+I    +++Y  + D F + ++VVP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L   +W+ +              G +  + +++ +VQT +  DF Y Y+  V  G+
Sbjct:    2 NIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYA--TVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFE----------GFFDLIAVVAGVVQTILYCDFFYLYITKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD22_HUMAN (ER lumen protein retaining receptor 2 OS=Homo sapiens GN=KDELR2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.582e-21
Identity = 64/220 (29.09%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y+                +Y+I    +++Y  + D F + ++VVP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L   +W+ +              G +  + +++ +VQT +  DF Y Y+  V  G+
Sbjct:    2 NIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKVIYLACSYA--TVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFE----------GFFDLIAVVAGVVQTILYCDFFYLYITKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD22_CHICK (ER lumen protein retaining receptor 2 OS=Gallus gallus GN=KDELR2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.582e-21
Identity = 64/220 (29.09%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y+                +Y+I    +++Y  + D F + +++VP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L   +W+ +              G +  + +++ +VQT +  DF Y YV  V  G+
Sbjct:    2 NIFRLTGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYA--TVYLIYMKFKATYDGNHDTFRVEFLIVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRYYFE----------GFFDLIAVVAGVVQTVLYCDFFYLYVTKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD22_BOVIN (ER lumen protein retaining receptor 2 OS=Bos taurus GN=KDELR2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.582e-21
Identity = 64/220 (29.09%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F +  +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ SF+  Y+                +Y+I    +++Y  + D F + ++VVP   L+ L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L   +W+ +              G +  + +++ +VQT +  DF Y Y+  V  G+
Sbjct:    2 NIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYA--TVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFE----------GFFDLIAVVAGVVQTILYCDFFYLYITKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD23_MOUSE (ER lumen protein retaining receptor 3 OS=Mus musculus GN=Kdelr3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.405e-21
Identity = 63/218 (28.90%), Postives = 108/218 (49.54%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F +  +  H + + +L+ K+ + K+CAG+S KSQ L A+    R    F     I+            +V +YMI +  R ++  + D F + +++VP   L+ L++ S +      + W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L  A+W+ +                +  + ++S +VQT    DF Y YV  V  G+
Sbjct:    2 NVFRILGDLSHLLAMILLLVKIWRSKSCAGISGKSQILFALVFTTRYLDLFSNFISIYNTVMKVVFLLCAYVTVYMIYWKFRKTFDIENDTFRLEFLLVPVTGLSFLVNYSYTPM---EVLWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRLLYLANWIRRYQTE----------NFYDQISVVSGVVQTIFYCDFFYLYVTKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD23_XENTR (ER lumen protein retaining receptor 3 OS=Xenopus tropicalis GN=kdelr3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.753e-21
Identity = 63/218 (28.90%), Postives = 107/218 (49.08%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F ++ +  H + I +L+ K+ K K+CAG+S KSQ L A+    R    F +    +            +V +Y+I    R +Y  + D F + +++VP   L+ L +   +      I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L  A+W+ +    +           +  + ++S +VQT    DF Y Y+  V  G+
Sbjct:    2 NVFRISGDVSHLLAIIILLLKMWKSKSCAGISGKSQLLFALVFTTRYLDLFTVFISAYNTVMKIVFLVCAYVTVYLIYGKFRKAYDSENDTFRLEFLLVPVIGLSFLENYEFTPL---EILWTFSIYLESVAILPQLFMISKTGEAESITTHYLFFLGLYRVLYLANWIWRYHTEK----------FYDQIAVVSGVVQTIFYFDFFYLYITKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD22_XENTR (ER lumen protein retaining receptor 2 OS=Xenopus tropicalis GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.753e-21
Identity = 65/220 (29.55%), Postives = 110/220 (50.00%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F ++ +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L  SF+  Y+                +Y+I    +++Y  + D F + ++VVP   L++L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L   +W+ +              G +  + +++ +VQT +  DF Y YV  V  G+
Sbjct:    2 NVFRLSGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLLTSFISLYNTSMKVIYIGCAYA--TVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSVLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLFNWIWRYSFE----------GFFDLIAIVAGVVQTILYCDFFYLYVTKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD22_XENLA (ER lumen protein retaining receptor 2 OS=Xenopus laevis GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.514e-21
Identity = 64/220 (29.09%), Postives = 110/220 (50.00%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F ++ +  H   I +L+ K+   ++CAG+S KSQ L A+    R   L+ SF+  Y+                +Y+I    +++Y  + D F + ++VVP   L++L++   S      I W F +YLE+V++LPQL ++  T   E  T HY+F LG+ R L   +W+ +              G +  + +++ +VQT +  DF Y YV  V  G+
Sbjct:    2 NVFRLSGDLCHLAAIIILLLKIWNSRSCAGISGKSQLLFAMVFTTRYLDLFTSFISLYNTSMKVIYMGCAYA--TVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSVLVNHDFSPL---EILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLFNWIWRFSFE----------GFFDLIAIVAGVVQTILYCDFFYLYVTKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_PLAFA (ER lumen protein retaining receptor OS=Plasmodium falciparum GN=ERD2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 71/227 (31.28%), Postives = 117/227 (51.54%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSS--YMEDKDNF-AIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYY-VKSVFGGQLVL 869
            N+F +  + +H + + +LI KL K K C G+S + QEL  I    R   L+  FV  Y+              + IY+IR  L  S  Y    DNF +  Y++ PC VL+LL     ++N+ N I W+F ++LE+V++LPQL +++  + VE  T+HYV  +G+ R     +W+ +        +  +G+        I  ++QT +  DF YY+ +   +G +LVL
Sbjct:    2 NIFRLIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYNT--VMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLT--CKTYNLYN-ILWSFSIWLESVAILPQLVLLEKQREVENITSHYVITMGLYRAFYILNWIYRYFFDDKPYINVVGW--------IGGLIQTLLYIDFFYYFALAKWYGKKLVL 215          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_PLAF7 (ER lumen protein retaining receptor OS=Plasmodium falciparum (isolate 3D7) GN=ERD2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 71/227 (31.28%), Postives = 117/227 (51.54%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSS--YMEDKDNF-AIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYY-VKSVFGGQLVL 869
            N+F +  + +H + + +LI KL K K C G+S + QEL  I    R   L+  FV  Y+              + IY+IR  L  S  Y    DNF +  Y++ PC VL+LL     ++N+ N I W+F ++LE+V++LPQL +++  + VE  T+HYV  +G+ R     +W+ +        +  +G+        I  ++QT +  DF YY+ +   +G +LVL
Sbjct:    2 NIFRLIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYNT--VMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLT--CKTYNLYN-ILWSFSIWLESVAILPQLVLLEKQREVENITSHYVITMGLYRAFYILNWIYRYFFDDKPYINVVGW--------IGGLIQTLLYIDFFYYFALAKWYGKKLVL 215          
The following BLAST results are available for this feature:
BLAST of FC878440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERD22_MOUSE2.582e-2129.09ER lumen protein retaining receptor 2 OS=Mus muscu... [more]
ERD22_HUMAN2.582e-2129.09ER lumen protein retaining receptor 2 OS=Homo sapi... [more]
ERD22_CHICK2.582e-2129.09ER lumen protein retaining receptor 2 OS=Gallus ga... [more]
ERD22_BOVIN2.582e-2129.09ER lumen protein retaining receptor 2 OS=Bos tauru... [more]
ERD23_MOUSE4.405e-2128.90ER lumen protein retaining receptor 3 OS=Mus muscu... [more]
ERD23_XENTR5.753e-2128.90ER lumen protein retaining receptor 3 OS=Xenopus t... [more]
ERD22_XENTR5.753e-2129.55ER lumen protein retaining receptor 2 OS=Xenopus t... [more]
ERD22_XENLA7.514e-2129.09ER lumen protein retaining receptor 2 OS=Xenopus l... [more]
ERD2_PLAFA2.186e-2031.28ER lumen protein retaining receptor OS=Plasmodium ... [more]
ERD2_PLAF72.186e-2031.28ER lumen protein retaining receptor OS=Plasmodium ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878440 ID=FC878440; Name=FC878440; organism=Citrus clementina; type=EST; length=870bp
CTCGCTCTCTCTAAATTACATCTCACTCTCTCGCACTTTCTCTTAATTTC
CGGTAAAATATTTTTAGACCGCTCATGAGGGCGCCGAAGAGGCCGATCCA
CGCGGTTTCGACATGGGTCCGGCGACAGCCGCCGAAAGTGAAGGCATTTT
TGGCGGTGGTCTCCGGCATGGCAGCGCTGGTTTTGCTCCGATTCATTGTA
CACGACCACGATAACCTCTTCGTTGCTGCCGAGGCCGTGCACTCCATTGG
AATCTCCGTGTTAATATACAAGCTCATGAAAGAGAAAACTTGTGCTGGAC
TGTCACTCAAATCCCAGGAACTAACAGCTATTTTCTTAGCTGTGAGGCTA
TACTGTAGTTTTGTGATGGAATATGATATACACACCCTACTGGATTTAGC
TACTTTGGCTACGACCCTTTGGGTTATTTATATGATCCGTTTCAATCTAA
GGTCTAGTTACATGGAGGACAAGGACAACTTTGCAATATATTATGTGGTG
GTACCCTGTGCAGTATTGGCTCTGTTAATTCATCCATCGACTTCGCATAA
TATATTGAATAGGATTTTCTGGGCTTTCTGTGTTTATCTGGAAGCTGTTT
CAGTACTGCCCCAGTTGCGGGTGATGCAGAACACAAAGATTGTTGAACCA
TTCACAGCCCATTATGTATTTGCGCTTGGTGTTGCGAGGTTTTTGAGCTG
TGCCCACTGGGTTCTCCAGGTTCTGGATAGTCGTGGACACTTGCTGGTAG
CCCTGGGCTATGGATTATGGCCTTCGATGGTGCTTATCTCAGAGATTGTC
CAAACTTTCATCTTAGCGGACTTCTGTTACTACTATGTCAAAAGTGTCTT
TGGCGGACAGCTAGTCCTCC
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