FC878449

Overview
NameFC878449
Unique NameFC878449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length926
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_SHEON (NADH-quinone oxidoreductase subunit G OS=Shewanella oneidensis GN=nuoG PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.654e-34
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEV-----EKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            ++VDG   ++     +LQAC   G+D+P FC+H  L   G CR C V+      +K  + V SC  P+  G  I  +   AK+ R+ V+E+ + NHP DCP+C++GG C LQD ++  G +  R+   KR+  +++LGP +   M RCI C RCVR+  + AG +DLG+ G
Sbjct:    4 IYVDGKEYEVDGADNLLQACLSLGLDVPYFCWHPALGSVGACRQCAVKQYQNADDKRGRLVMSCMTPSTDGTYISIEDEEAKEFRKCVVEWQMTNHPHDCPVCEEGGACHLQDMTVMTGHNSRRYRFTKRTHQNQDLGPFINHEMNRCIACYRCVRYYKDYAGGEDLGVYG 174

HSP 2 Score: 29.261 bits (64), Expect = 5.654e-34
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN++++CP G  T K
Sbjct:  189 LESEFSGNLVEVCPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_PSEPK (NADH-quinone oxidoreductase subunit G OS=Pseudomonas putida (strain KT2440) GN=nuoG PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.654e-34
Identity = 70/171 (40.94%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG  L++     +LQAC   G+DIP FC+H  L   G CR C V     E +   + V SC  PA  G  I  D   +K  R  V+E+L+ NHP DCP+C++GG C LQD ++  G +  R+   KR+  +++LGP +   M RCI C RCVR+  + AG  DLG+ G
Sbjct:    4 IHVDGKALEVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDTRGRIVMSCMTPASDGTWISIDDEESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQDLGPFIAHEMNRCIACYRCVRYYKDYAGGTDLGVYG 174

HSP 2 Score: 28.1054 bits (61), Expect = 5.654e-34
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 3 
Query:  840 LMTSELSGNVIDICPVGALTFK 905
            ++ SE SGN+ ++CP G  T K
Sbjct:  188 VLESEFSGNLTEVCPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_SALTY (NADH-quinone oxidoreductase subunit G OS=Salmonella typhimurium GN=nuoG PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 7.364e-34
Identity = 69/171 (40.35%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-----VASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG   ++     +LQAC   G+DIP FC+H  L   G CR C V+  ++ +      V SC  PA  G  I  D   AK+ RE V+E+L+ NHP DCP+C++GG C LQD ++  G    R+   KR+  +++LGP +   M RCI C RCVR+  + A   DLG+ G
Sbjct:    4 IHVDGKEYEVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPATDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYG 174

HSP 2 Score: 29.6462 bits (65), Expect = 7.364e-34
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN+++ICP G  T K
Sbjct:  189 LESEFSGNLVEICPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_SALTI (NADH-quinone oxidoreductase subunit G OS=Salmonella typhi GN=nuoG PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 7.364e-34
Identity = 69/171 (40.35%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-----VASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG   ++     +LQAC   G+DIP FC+H  L   G CR C V+  ++ +      V SC  PA  G  I  D   AK+ RE V+E+L+ NHP DCP+C++GG C LQD ++  G    R+   KR+  +++LGP +   M RCI C RCVR+  + A   DLG+ G
Sbjct:    4 IHVDGKEYEVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPATDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYG 174

HSP 2 Score: 29.6462 bits (65), Expect = 7.364e-34
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN+++ICP G  T K
Sbjct:  189 LESEFSGNLVEICPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_SHIFL (NADH-quinone oxidoreductase subunit G OS=Shigella flexneri GN=nuoG PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 2.119e-33
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-----VASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG   ++     +L+AC   G+DIP FC+H  L   G CR C V+  ++ +      V SC  PA  G  I  D   AK+ RE V+E+L+ NHP DCP+C++GG C LQD ++  G    R+   KR+  +++LGP +   M RCI C RCVR+  + A   DLG+ G
Sbjct:    4 IHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYG 174

HSP 2 Score: 29.6462 bits (65), Expect = 2.119e-33
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN+++ICP G  T K
Sbjct:  189 LESEFSGNLVEICPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_ECOLI (NADH-quinone oxidoreductase subunit G OS=Escherichia coli (strain K12) GN=nuoG PE=1 SV=4)

HSP 1 Score: 134.42 bits (337), Expect = 2.119e-33
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-----VASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG   ++     +L+AC   G+DIP FC+H  L   G CR C V+  ++ +      V SC  PA  G  I  D   AK+ RE V+E+L+ NHP DCP+C++GG C LQD ++  G    R+   KR+  +++LGP +   M RCI C RCVR+  + A   DLG+ G
Sbjct:    4 IHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYG 174

HSP 2 Score: 29.6462 bits (65), Expect = 2.119e-33
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN+++ICP G  T K
Sbjct:  189 LESEFSGNLVEICPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_ECOL6 (NADH-quinone oxidoreductase subunit G OS=Escherichia coli O6 GN=nuoG PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 2.119e-33
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-----VASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG   ++     +L+AC   G+DIP FC+H  L   G CR C V+  ++ +      V SC  PA  G  I  D   AK+ RE V+E+L+ NHP DCP+C++GG C LQD ++  G    R+   KR+  +++LGP +   M RCI C RCVR+  + A   DLG+ G
Sbjct:    4 IHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYG 174

HSP 2 Score: 29.6462 bits (65), Expect = 2.119e-33
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN+++ICP G  T K
Sbjct:  189 LESEFSGNLVEICPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_ECO57 (NADH-quinone oxidoreductase subunit G OS=Escherichia coli O157:H7 GN=nuoG PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 2.119e-33
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-----VASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG   ++     +L+AC   G+DIP FC+H  L   G CR C V+  ++ +      V SC  PA  G  I  D   AK+ RE V+E+L+ NHP DCP+C++GG C LQD ++  G    R+   KR+  +++LGP +   M RCI C RCVR+  + A   DLG+ G
Sbjct:    4 IHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYG 174

HSP 2 Score: 29.6462 bits (65), Expect = 2.119e-33
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN+++ICP G  T K
Sbjct:  189 LESEFSGNLVEICPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_YERPE (NADH-quinone oxidoreductase subunit G OS=Yersinia pestis GN=nuoG PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.759e-33
Identity = 69/171 (40.35%), Postives = 95/171 (55.56%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSP-----KPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG    +     +LQAC   G+DIP FC+H  L   G CR C V+  ++      + V SC  PA  G  I  D   AK  RE V+E+L+ NHP DCP+C++GG C LQD ++  G    R+   KR+  +++LGP +   M RCI C RCVR+  + A   DLG+ G
Sbjct:    4 IHVDGKEYDVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNADDTRGRLVMSCMTPATDGTFISIDDSEAKAFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHQNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYG 174

HSP 2 Score: 29.261 bits (64), Expect = 2.759e-33
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN++++CP G  T K
Sbjct:  189 LESEFSGNLVEVCPTGVFTDK 209
[Close]
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_PSESM (NADH-quinone oxidoreductase subunit G OS=Pseudomonas syringae pv. tomato GN=nuoG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.594e-33
Identity = 69/171 (40.35%), Postives = 95/171 (55.56%), Query Frame = 1 
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG  L++     +LQAC   G+DIP FC+H  L   G CR C V     E +   + V SC  PA     I  +   +K  R  V+E+L+ NHP DCP+C++GG C LQD ++  G +  R+   KR+  ++ LGP +   M RCI C RCVRF  + AG  DLG+ G
Sbjct:    4 IHVDGKALEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDTRGRIVMSCMTPATDNTWISIEDDESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELGPFIAHEMNRCIACYRCVRFYKDYAGGTDLGVYG 174

HSP 2 Score: 27.7202 bits (60), Expect = 3.594e-33
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 3 
Query:  843 MTSELSGNVIDICPVGALTFK 905
            + SE SGN+ ++CP G  T K
Sbjct:  189 LESEFSGNLTEVCPTGVFTDK 209
The following BLAST results are available for this feature:
BLAST of FC878449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
NUOG_SHEON5.654e-3438.60NADH-quinone oxidoreductase subunit G OS=Shewanell... [more]
NUOG_PSEPK5.654e-3440.94NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_SALTY7.364e-3440.35NADH-quinone oxidoreductase subunit G OS=Salmonell... [more]
NUOG_SALTI7.364e-3440.35NADH-quinone oxidoreductase subunit G OS=Salmonell... [more]
NUOG_SHIFL2.119e-3339.77NADH-quinone oxidoreductase subunit G OS=Shigella ... [more]
NUOG_ECOLI2.119e-3339.77NADH-quinone oxidoreductase subunit G OS=Escherich... [more]
NUOG_ECOL62.119e-3339.77NADH-quinone oxidoreductase subunit G OS=Escherich... [more]
NUOG_ECO572.119e-3339.77NADH-quinone oxidoreductase subunit G OS=Escherich... [more]
NUOG_YERPE2.759e-3340.35NADH-quinone oxidoreductase subunit G OS=Yersinia ... [more]
NUOG_PSESM3.594e-3340.35NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878449 ID=FC878449; Name=FC878449; organism=Citrus clementina; type=EST; length=926bp
TTTTAATCTCTGAAAAACGAACACTGGTACAGCTGAAGAACAACGTTCAA
CATCAGACCACACTCGAGTTTGAGCGAGAGAGAATCGAAAATGGGGTTAG
GGTTGTTAGCATCGAGGACGATGAGACCCCTCAAGTATTCAAACTCCAGA
GTCTTTATCCGGTCCATCGTTTCCAAACCGGAGCTCCAATCGCCCGAAGC
TTCTTCAGCAGCAGCGGCTACAGCGCTCGAACCGGATCTCCCCCCTCGAT
CGCCCGTGGGTGGGGCCCGGGTCCATTTCCCCAACCCGGAAGATGCAATC
GAAGTGTTCGTCGATGGTTACCCGCTCAAAATCCCCAAGGGCTTCACCGT
TTTGCAGGCCTGTGAGGTCGCCGGCGTTGACATTCCTAGATTTTGTTATC
ACAGTAGACTTTCGATTGCCGGAAATTGCCGAATGTGTCTCGTTGAAGTC
GAGAAATCGCCCAAACCTGTTGCTTCTTGCGCCATGCCTGCTCTTCCCGG
AATGAAAATTAAGACGGATACACCTTTAGCTAAGAAGGCGAGAGAAGGGG
TGATGGAGTTTTTGTTAATGAATCATCCTTTGGATTGTCCAATTTGTGAT
CAGGGTGGTGAATGTGATCTCCAGGATCAGTCTATGGCTTTCGGTTCTGA
TCGTGGCCGCTTCACTGAAATGAAAAGATCTGTTGTTGATAAGAATCTTG
GTCCGTTGGTGAAGACTGTCATGACTCGATGTATCCAATGCACAAGGTGT
GTTAGGTTTGCAACAGAGGTTGCTGGAGTACAAGATCTTGGCATGCTAGG
TCGTGGCAGTGGAGAGGAAATTGGAACTTACGTGGAAAACTTATGACAAG
TGAACTTTCTGGAAATGTGATAGATATTTGTCCTGTGGGAGCCCTTACTT
TCAAACCTTTCGCATTCAAAGCCCGA
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