FC878449

Overview
NameFC878449
Unique NameFC878449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length926
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NQO3_THET8 (NADH-quinone oxidoreductase subunit 3 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo3 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.578e-32
Identity = 79/213 (37.09%), Postives = 109/213 (51.17%), Query Frame = 1
Query:  298 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV---------------------EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFG-----SDRG--------RFTEMKRSVVDKN--LGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGT 828
            + V V+   +++P G +V+ A   AG D+P FC    LS  G CRMCLV                     E++  PK  ASC      GM + T + + ++A+ G++EF L+NHPLDCP CD+GG C+LQD+++ +G       +G        RF E  R  VDK+  L P V     RCI C RCVR+  EV G + L  + RG    IGT
Sbjct:    2 VRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRF-EFTRRHVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGT 213          

HSP 2 Score: 32.3426 bits (72), Expect = 6.578e-32
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 3
Query:  843 MTSELSGNVIDICPVGALTFKPFAFKAR 926
            + S  SGN+ DICPVGAL      F+AR
Sbjct:  218 LPSGFSGNITDICPVGALLDLTARFRAR 245          
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAP (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.838e-30
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  301 EVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIG 825
            +++VDG    + +   +LQAC  +G++IP FC+H  L   G CR C V      ++   K + SC  P + G  I  +   +KK R  ++E LL NHP DCP+C++GG C LQD ++    +   +   KR+  ++ LG  +K  M RCI C RCVR+  + A   DL + G  +    G
Sbjct:    3 KIYVDGKAYCMSESDNLLQACLSSGLNIPYFCWHPILGSLGACRQCAVTQYNSSLDNQGKLIMSCMTPVIDGTIISINDDTSKKFRSNIVELLLTNHPHDCPVCEEGGNCHLQDMTVMTTHNFRNYRFSKRTHKNQYLGSFIKHEMNRCIGCYRCVRYYRDYADGTDLDVYGANNNIYFG 182          

HSP 2 Score: 28.4906 bits (62), Expect = 5.838e-30
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  840 LMTSELSGNVIDICPVGALTFKPFAFK 920
            ++ +E SGN+I+ICP G  T K  + K
Sbjct:  188 VLENEHSGNLIEICPTGVFTDKTHSKK 214          
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAI (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.678e-29
Identity = 61/180 (33.89%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  301 EVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEV-----EKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIG 825
            +++VD     + +   +LQAC   G++IP FC+H  L   G CR C V       ++  + + SC  P   G  I   +  ++  R  ++E LL NHP DCP+C++GG C LQD ++        +   KR+  ++ LGP +K  M RCI C RCVR+  E A   D G+ G  +    G
Sbjct:    3 KIYVDSKIYNVNESDNLLQACLSVGINIPYFCWHPLLGSLGACRQCAVTQYDNFQDRKGRLIMSCMTPVTDGAIISIKSTESEVFRSAIVELLLTNHPHDCPVCEEGGHCHLQDMTVMVKHSMRNYRFKKRTHKNQYLGPFIKHEMNRCIACYRCVRYYNEYADGVDFGVYGSNNNVYFG 182          

HSP 2 Score: 28.8758 bits (63), Expect = 1.678e-29
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  840 LMTSELSGNVIDICPVGALTFKPFAFK 920
            ++ SE SGN+I++CP G  T K  + K
Sbjct:  188 VLESEHSGNLIELCPTGVFTDKTHSKK 214          
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: NUOG_BLOFL (NADH-quinone oxidoreductase subunit G OS=Blochmannia floridanus GN=nuoG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.063e-28
Identity = 61/199 (30.65%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  298 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS------------PKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVENL*QVNF 858
            I ++++     +     VL+ C   G ++P FC+H  L   G+CR C V++  +             + V SC  P +  M I       ++ R+ ++E L++NHP DCP+C++GG C LQD ++       R+   KR+  ++ LGP +   M RCI C RCVR+  + AG  DLG+ G       G   + + Q  F
Sbjct:    3 IPIYIEEKKYMVEDTKNVLEVCLSLGFNVPYFCWHPALGSIGSCRQCAVKLYDNLHCVPDSKHINFGRLVMSCMTPVIKDMYISLFDKELQEFRKNILELLMVNHPHDCPVCEEGGNCHLQDMAVMVEHTYRRYRFTKRTHYNQYLGPFITHEMNRCITCYRCVRYYKDYAGGNDLGVFGVHDNIYFGRVQDGILQSEF 201          

HSP 2 Score: 30.4166 bits (67), Expect = 1.063e-28
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  840 LMTSELSGNVIDICPVGALTFK 905
            ++ SE SGN+++ICP G  T K
Sbjct:  196 ILQSEFSGNLVEICPTGVFTDK 217          
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: HOXU_RALEH (NAD-reducing hydrogenase hoxS subunit gamma OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxU PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.081e-12
Identity = 45/160 (28.12%), Postives = 70/160 (43.75%), Query Frame = 1
Query:  295 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVA 774
            +I++ +DG  L   +G T++      GV IP  CY       G CR+C V+V  +    A+C +    G+ ++ + P     R+ ++EFL      +CP C++ G C LQ           RF       V  +    +     RCI C RCV F  + A
Sbjct:    2 SIQITIDGKTLTTEEGRTLVDVAAENGVYIPTLCYLKDKPCLGTCRVCSVKV--NGNVAAACTVRVSKGLNVEVNDPELVDMRKALVEFLFAEGNHNCPSCEKSGRCQLQAVGYEVDMMVSRFPYRFPVRVVDHASEKIWLERDRCIFCQRCVEFIRDKA 159          
BLAST of FC878449 vs. ExPASy Swiss-Prot
Match: FDHL_BACSU (Putative formate dehydrogenase yrhE OS=Bacillus subtilis GN=yrhE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.479e-11
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 1
Query:  295 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICD-QGGECDLQDQSMAFGSDRGRF----TEMKRSVVDKNLGPLVKTVMTRCIQCTRCV 753
            +I V VDG  ++   G T+L      G++ P+ C+   +     C  C+VE   + K V SCA  A  GM I       K+A+   M+ LL NH L C +CD   G C L + +   G +  ++     E     VD +  P  +    +CI C +CV
Sbjct:    6 SISVRVDGTEIQARAGATILDILNENGIEYPQICHVPEVDPIQTCDTCIVEA--NGKLVRSCATVAENGMSIDLSGNRVKEAQTEAMDRLLENHLLYCTVCDNNNGNCTLHNTAEMMGIEHQKYPYTPKEDPSCAVDMS-HPFYRYDPNQCIACGQCV 160          
The following BLAST results are available for this feature:
BLAST of FC878449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
NQO3_THET86.578e-3237.09NADH-quinone oxidoreductase subunit 3 OS=Thermus t... [more]
NUOG_BUCAP5.838e-3035.00NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_BUCAI1.678e-2933.89NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_BLOFL1.063e-2830.65NADH-quinone oxidoreductase subunit G OS=Blochmann... [more]
HOXU_RALEH1.081e-1228.13NAD-reducing hydrogenase hoxS subunit gamma OS=Ral... [more]
FDHL_BACSU3.479e-1130.38Putative formate dehydrogenase yrhE OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878449 ID=FC878449; Name=FC878449; organism=Citrus clementina; type=EST; length=926bp
TTTTAATCTCTGAAAAACGAACACTGGTACAGCTGAAGAACAACGTTCAA
CATCAGACCACACTCGAGTTTGAGCGAGAGAGAATCGAAAATGGGGTTAG
GGTTGTTAGCATCGAGGACGATGAGACCCCTCAAGTATTCAAACTCCAGA
GTCTTTATCCGGTCCATCGTTTCCAAACCGGAGCTCCAATCGCCCGAAGC
TTCTTCAGCAGCAGCGGCTACAGCGCTCGAACCGGATCTCCCCCCTCGAT
CGCCCGTGGGTGGGGCCCGGGTCCATTTCCCCAACCCGGAAGATGCAATC
GAAGTGTTCGTCGATGGTTACCCGCTCAAAATCCCCAAGGGCTTCACCGT
TTTGCAGGCCTGTGAGGTCGCCGGCGTTGACATTCCTAGATTTTGTTATC
ACAGTAGACTTTCGATTGCCGGAAATTGCCGAATGTGTCTCGTTGAAGTC
GAGAAATCGCCCAAACCTGTTGCTTCTTGCGCCATGCCTGCTCTTCCCGG
AATGAAAATTAAGACGGATACACCTTTAGCTAAGAAGGCGAGAGAAGGGG
TGATGGAGTTTTTGTTAATGAATCATCCTTTGGATTGTCCAATTTGTGAT
CAGGGTGGTGAATGTGATCTCCAGGATCAGTCTATGGCTTTCGGTTCTGA
TCGTGGCCGCTTCACTGAAATGAAAAGATCTGTTGTTGATAAGAATCTTG
GTCCGTTGGTGAAGACTGTCATGACTCGATGTATCCAATGCACAAGGTGT
GTTAGGTTTGCAACAGAGGTTGCTGGAGTACAAGATCTTGGCATGCTAGG
TCGTGGCAGTGGAGAGGAAATTGGAACTTACGTGGAAAACTTATGACAAG
TGAACTTTCTGGAAATGTGATAGATATTTGTCCTGTGGGAGCCCTTACTT
TCAAACCTTTCGCATTCAAAGCCCGA
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