FC878462

Overview
NameFC878462
Unique NameFC878462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.220e-18
Identity = 58/160 (36.25%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  468 STDEESCKKPREEHIKA--KISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQ-SVLVATYEGEHNHPLPCQ---MDAASGSTSRCVTAGSVPCSTG----------------------QTITLDLTRSN 863
            S   E+ +   EEH +   K +RV  +    D +   + DG QWRKYGQK  + NP PRAY++CS + +CPV+K+VQR  E++ S  + TYEG H+HPLP +   M A + + +  + +GS   S+                        T+TLDLTR N
Sbjct:  168 SVRNENHQDVLEEHEQTGLKKTRVCVKASCEDPS---INDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSSSSTSASLSYFFPFHHFSISTTNSHPTVTLDLTRPN 324          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.057e-18
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  459 ESSSTDEESCK--KPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAA--SGSTSRCVTAGSVPCSTGQTITLDLTRSNN 866
            +    D+ S K  K +++  K K  RV + T+   T    ++DGY+WRKYGQK  +++P PR+Y++C+    C VKK+V+RS +D +V++ TYE +HNHP+P     A  SG+T+      S P  +   I    + SN+
Sbjct:  145 DGGEDDQRSQKVVKTKKKEEKKKEPRVSFMTK---TEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT-TQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNRRTAMFSGTTASDYNPSSSPIFSDLIINTPRSFSND 280          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.033e-17
Identity = 51/133 (38.35%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  453 NSESSSTD---EESCKKPREEHI------------KAKISRVHYRTEPSD---TTSLV--VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTS 791
            NS SS  D   E+S K  R+  +            K K + V  + EP     T S V  ++DGY+WRKYGQK  +++P PR+Y++C+    C VKK+V+RS +D +V++ TYEG+HNHP+P  +  +S + +
Sbjct:  111 NSSSSEADHPGEDSGKSRRKRELVGEEDQISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT-TQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGSSAAAA 242          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  447 MGNSESSSTDEESCKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAAS 779
            + N+ ++S   ++C K + +   A + R+ + T   D    V+ DGY+WRKYGQK  ++N  PR+Y++C++  +C VKK+VQR  +D +V+V TYEG HNHP    M+  S
Sbjct:   75 VSNNSNNSDHNKNCNKGKGKRTLA-MQRIAFHTRSDDD---VLDDGYRWRKYGQKSVKNNAHPRSYYRCTY-HTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLS 180          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  450 GNSESSSTDEESCKKPREEHIKAKIS-RVHYRTEPS---DTTSLV--VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASG 782
            G       DE   K+ + E   A++S       EP     TTS V  + DGY+WRKYGQKV + NP+PR+Y+KC+ AP C V+K V+R+  D   ++ TYEG+HNH +P   +++ G
Sbjct:  439 GGGGGGEGDESESKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-APGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHG 554          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  441 LTMGNSESSSTDEESCKKPREEHIK-AKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPL 755
            L  G  ESS    E C K  E   K  K  R  ++T        ++ DGY+WRKYGQK  ++N  PR+Y++C++   C VKK+VQR   DQ V+V TYEG H+HP+
Sbjct:   24 LHQGEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVD---ILDDGYRWRKYGQKAVKNNKFPRSYYRCTYG-GCNVKKQVQRLTVDQEVVVTTYEGVHSHPI 125          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  450 GNSESSSTDEESCKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLP 758
            G  ESS    +  KK  E+  K +  RV + T+ S+   L  +DGY+WRKYGQK  +++P PR+Y++C+    C VKK+V+RS +D S+++ TYEG+HNHP+P
Sbjct:   99 GVGESSKQLTKQGKKKGEK--KEREVRVAFMTK-SEIDHL--EDGYRWRKYGQKAVKNSPYPRSYYRCT-TQKCNVKKRVERSFQDPSIVITTYEGKHNHPIP 195          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  447 MGNSESSSTD-EESCKKPREEHIKAKISR----VHYRT--EPS---DTTSLV--VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTS 791
            +GN E+   + +E+   P+    + +IS       +RT  EP     TTS V  + DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+  D   +V TYEG+HNH LP    ++  + +
Sbjct:  354 VGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAAAA 479          

HSP 2 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  522 ISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCVTAGSVPCSTGQTITLDLTRSNNKSSN 878
            ++ + +R++          DGY WRKYGQK  + +  PR+Y+KC+  P CPVKKKV+RS++ Q V    Y+G+HNH  P      +   +  +   S+  + G +  L  ++    SSN
Sbjct:  211 VTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCT-NPGCPVKKKVERSLDGQ-VTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSS-ELGASQFQTNSSN 326          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  570 VVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCV 800
            ++ DGY+WRKYGQKV + NP PR+Y+KC+  P+C V+K V+R+  D   ++ TYEG+HNH +P   +  + +T+  V
Sbjct:  304 LLDDGYRWRKYGQKVVKGNPHPRSYYKCT-TPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAV 379          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 52/150 (34.67%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  453 NSESSSTDEESCKKPREEHIKAKIS---RVHYRTEPSDTTS-----LVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCVTAGSVPCSTGQTITLDLTRSNNKSSN 878
            N+ SS +  +    PR   IK + S   +V     P+   S     +V  D + WRKYGQK  + +P PR Y++CS +  C  +K+V+RS  D ++LV TY  EHNHP P Q +A +GST    ++   P S   T     + S+    N
Sbjct:  166 NNTSSCSQVQISSSPRNLGIKRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSSSSSSLNPSSKSSTAAATTSPSSRVFQN 315          
The following BLAST results are available for this feature:
BLAST of FC878462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRK36_ARATH1.220e-1836.25Probable WRKY transcription factor 36 OS=Arabidops... [more]
WRKY8_ARATH6.057e-1836.43Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK28_ARATH1.033e-1738.35Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK56_ARATH1.762e-1739.64Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRKY2_ARATH3.006e-1741.03Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK75_ARATH3.006e-1743.40Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK71_ARATH3.926e-1744.66Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRKY4_ARATH8.746e-1739.37Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK58_ARATH1.142e-1645.45Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK35_ARATH1.142e-1634.67Probable WRKY transcription factor 35 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878462 ID=FC878462; Name=FC878462; organism=Citrus clementina; type=EST; length=880bp
AAAATTTAAGTAATACAAGTCTTTTGAGAAAATTTAAGTAATACAAGTCT
TTTGAGTAAATTTGTTCTTCTTGTTGGTCGTTAGCTATGGATTCTTTTTC
ATGGGTTGATACTTCATTGGATCTCAACTCCAACCCTCTCCGATTGAATG
ATGAAGTTCTGGCGCCGGCGAAGAAAGAATTGCAAGGCGATTTTTCTGGT
TTTGGGAACAAGGATTCTGTGAAACAAGAGACCGGAGCTTTAGTGGCGGA
ATTGAACCGCGTGAGTGCAGAAAATAAGAAGCTAACAGAAACGTTAACAG
CGTTGTGTGAGAGTTACAATGCTTTGAGAAACCAATTGATGGATTATATG
AGCAAGAATCCTGAGATTAGTAAGGAGGTTTTTATTAGTTCATCGAAGAA
ACGAAAATCCGAAAGCAGCAACAACGACAACAATGTTGCGCTAACAATGG
GAAATTCTGAAAGCAGTTCTACTGATGAAGAATCTTGCAAGAAACCAAGG
GAAGAACACATCAAGGCAAAGATTTCGAGAGTTCATTATAGGACCGAGCC
ATCTGATACCACCAGCCTTGTTGTGAAAGATGGATATCAATGGAGGAAAT
ACGGACAAAAGGTCACTAGAGATAATCCTTCTCCTAGAGCTTACTTCAAA
TGCTCTTTCGCTCCAAGCTGCCCAGTTAAAAAGAAGGTACAAAGAAGTGT
TGAGGACCAATCTGTATTGGTAGCGACTTACGAGGGGGAGCACAACCATC
CACTTCCGTGTCAAATGGACGCAGCATCCGGTTCAACAAGCCGTTGTGTG
ACGGCCGGTTCGGTCCCCTGCTCGACCGGACAAACCATCACTCTTGATCT
CACAAGGTCTAATAATAAGTCCAGCAACGA
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