FC878505

Overview
NameFC878505
Unique NameFC878505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.889e-47
Identity = 103/256 (40.23%), Postives = 146/256 (57.03%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L YR+ H V     +W+ + +CE  F   WLL    KW P + +TY +RL  R        +L PVD+FV+T DP++EPPL+  NTVLS+LAV+YP +K++ YVSDDG + LT+ +L E ++FA+ WVPFCKK+N+  RAP  YF    +  +      F K+    KREYE+   ++      +  +  E     D   +      DH  +++V     GG+  D  E+P +VY+SREKRP   HH KAGAMN L
Sbjct:   37 LLYRILH-VNQKDTVWIVAFLCETCFTFVWLLITNIKWSPADYKTYPERLDERVH------ELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYFRNSPEAAEGS---EFSKDWEMTKREYEKLSQKVEDATGSSHWLDAE----DDFEAFLNTKSNDHSTIVKVVWENKGGVG-DEKEVPHVVYISREKRPNHFHHYKAGAMNFL 277          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.079e-47
Identity = 109/262 (41.60%), Postives = 157/262 (59.92%), Query Frame = 3
Query:  123 LQYRVTH--PVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG-TPWPGN-NPRDHPGMIQVFL-GRS-GGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L YR T      +    WL     E+WFA+ W++ Q  +W PV R T+ +RLA RY        L  VD+FV T DP  EPP +  +T+LS++A +YP +K+S Y+SDDG ++LTF AL E + FA+KW+PFC+++NIEPR+P  YF++   +  +   P   KE   +K  YEE + RI++ V    K+PEE      G   W      ++H  ++QV + G+S   +D DGN LP LVY++REK P + H+ KAGA+NAL
Sbjct:   38 LYYRATRVPAAGEGRAAWLGMAAAELWFAVYWVITQSVRWCPVRRRTFKNRLAERYKEN-----LPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYFSESEGH-HNLCSP---KEWSFIKNLYEEMRERIDSAVMSG-KIPEEIKLKHKGFDEWNSEMTSKNHQPIVQVLIDGKSQNAVDDDGNVLPTLVYMAREKSPQYHHNFKAGALNAL 289          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.292e-46
Identity = 99/242 (40.91%), Postives = 144/242 (59.50%), Query Frame = 3
Query:  165 LWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            +W+ + +CE +F+  WLL    KW P + ++Y +RL  R         L  VD+FV+T DP++EPP++ ANT+LS+LAV+YP +K++ YVSDDG + LT+ +L E ++FA+ WVPFCKK+NI+ RAP  YF       +      F K+    KREYE+   R+      +  +  E     D   +    P DH  +++V     GG+  + NE+P  VY+SREKRP +LHH KAGAMN L
Sbjct:   50 VWVVAFLCESFFSFIWLLITSIKWSPASYKSYPERLDERVH------DLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYFLNPPAATESS---EFSKDWEITKREYEKLSRRVEDATGDSHWLDAE----DDFEDFSNTKPNDHSTIVKVVWENKGGVGVE-NEVPHFVYISREKRPNYLHHYKAGAMNFL 277          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.787e-45
Identity = 99/256 (38.67%), Postives = 145/256 (56.64%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L YR+ H  ++   +WL + +CE  F+  WL+    KW P   + Y +RL  R         L  VD+FV T DP++EPP++  NTVLS+LAV+YP +K++ YVSDDG + LT+ +L E ++F + W PFCKK+N+  RAP  YF   +    D +   F K+ + MKREY +   ++      +  +  +     D   +    P DH  +++V     GG+  D  E+P LVY+SREKRP +LHH K GAMN L
Sbjct:   37 LWYRILHMCENN-TIWLVAFLCESCFSFMWLIITCIKWSPAEDKPYPNRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATDDSV---FSKDWKMMKREYVKLCRKVEDATGDSHWLDAD----DDFEAFSNTKPNDHSTIVKVVWENKGGVG-DEKEVPHLVYISREKRPNYLHHYKTGAMNFL 277          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.754e-45
Identity = 100/243 (41.15%), Postives = 141/243 (58.02%), Query Frame = 3
Query:  165 LWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALR-YDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            +WL + +CE  F+  WLL    KW P   + Y DRL  R YD       L  VD+FV T DP++EPP++  NTVLS+LAV+YP +K++ YVSDDG + LT+ +L E ++FA+ WVPFCKK+N++ RAP  YF       +      F ++    KREYE+   ++      +  +     T  +   +    P DH  +I+V     GG+  D  E+P +VY+SREKRP +LHH KAGAMN L
Sbjct:   50 IWLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDERVYD-------LPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYFLNPFAATEGS---EFSRDWEMTKREYEKLCRKVEDATGDSHLL----GTDNELEAFSNTKPNDHSTIIKVVWENKGGVG-DEKEVPHIVYISREKRPNYLHHYKAGAMNFL 277          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 106/246 (43.09%), Postives = 144/246 (58.54%), Query Frame = 3
Query:  165 LWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQ-DG-TPWPGN-NPRDHPGMIQVFL-GRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            +W    I EIWF L W++ Q  +W PV R  + DRL+ RY      S L  +D+FV T DP+ EPPL+  NTVLS+ A+DYP +K++ Y+SDDG + LTF AL+E AEFA+ WVPFCKK N+EP +P  Y + K + L    +         + + Y E   RI    A+  ++PEE      DG + W  +   R+H  ++QV + GR G        +P LVY+SREKRP   H+ KAGAMNAL
Sbjct:   65 IWFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRRYG-----SDLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAYLSSKANCLDSAAE--------EVAKLYREMAARIET-AARLGRIPEEARVKYGDGFSQWDADATRRNHGTILQVLVDGREGNTIA----IPTLVYLSREKRPQHHHNFKAGAMNAL 292          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.407e-43
Identity = 97/256 (37.89%), Postives = 143/256 (55.86%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L YR+ H + +   +WL +  CE  F+L WL+    KW P     Y++ L  R         L  +D+FV T D ++E P++T NTVLS+LAV+YP +K++ YVSDDG + LT+ +L E ++F + W PFCKK+N+  RAP  YF   +    D +   F K+ + MKREY +   ++      +  +  +     D   +    P DH  +++V     GG+  D  E+P LVY+SREKRP +LHH K GAMN L
Sbjct:   37 LLYRILH-ISENDNVWLLAFFCESCFSLVWLIFTCLKWSPAEDIPYINTLNERVH------DLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATDDSV---FSKDWKMMKREYVKLCRKVEDATGDSHWLDAD----DDFEAFSNTKPNDHSTIVKVVWENKGGVG-DEKEVPHLVYISREKRPNYLHHYKTGAMNFL 277          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.811e-43
Identity = 96/256 (37.50%), Postives = 146/256 (57.03%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L +R+ H   +   +WL +  CE  F L  LL    KW P + + + DRL  R         L  VD+FV T DP++EPP++  +TVLS+LAV+YP +K++ YVSDDG + LT+ +L E ++FA+ WVPFCKK+N   RAP  YF + I    +  +  F ++    KREYE+ + ++      +  +  E     D   +    P DH  +++V     GG+  D  E+P ++Y+SREKRP ++H++K GAMN L
Sbjct:   37 LLHRIRH-TSEYDNVWLVAFFCESCFFLVCLLITCLKWSPADTKPFPDRLDERVH------DLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYE--FNRDWEKTKREYEKLRRKVEDATGDSHMLDVE----DDFEAFSNTKPNDHSTLVKVVWENKGGVG-DEKEIPHIIYISREKRPNYVHNQKCGAMNFL 278          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.295e-42
Identity = 109/258 (42.25%), Postives = 142/258 (55.04%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV--DKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L +RV H      P    ++ CE WF   WLL+   KW PV  +T+ + LA R D      +L  VD+FV+T DP+ EPPLVT NTVLS+LA+DYP   +K++ YVSDDG + LT  AL E A FAR WVPFC++H +  RAP  YF+   ++        F+++   MK EYE+   RI      +      G   +      GN    HP +I+V    +     DG   PRL+YVSREK P   HH KAGAMNAL
Sbjct:   37 LLHRVLHD--SGAPWRRAALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAERID------ELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPEF--GPADGKFLEDWTFMKSEYEKLVHRIEDADEPSLLRHGGGEFAEFLDVERGN----HPTIIKVLWDNNRSRTGDG--FPRLIYVSREKSPNLHHHYKAGAMNAL 278          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 7.351e-38
Identity = 97/265 (36.60%), Postives = 137/265 (51.70%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVIC--EIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG-----TPWPGNNPR-DHPGMIQVFLGRSGGL-DTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L Y   H +  A    +TS++   +I  A  W      ++ PV R  Y ++ A       EP     +D+F+ T DP KEPP++  NT LS++A +YP DK+S YVSDDG + LT  AL E A+F++ W+PFCKK+N++ R+PE YF+ K+    D        E   +K  YE+ K R+  +V   +   E  +   D        W     R DHP +IQV       + DT    +P L+YVSREK     HH KAGA+N L
Sbjct:   59 LMYHHVHSLLTANTTLITSLLLLSDIVLAFMWATTTSLRYKPVRRTEYPEKYA------AEPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYFSSKLRSRSD--------EAENIKMMYEDMKSRVEHVVESGK--VETAFITCDQFRGVFDLWTDKFTRHDHPTIIQVLQNSENDMDDTKKYIMPNLIYVSREKSKVSSHHFKAGALNTL 307          
The following BLAST results are available for this feature:
BLAST of FC878505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH3.889e-4740.23Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLE6_ORYSJ5.079e-4741.60Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLB3_ARATH3.292e-4640.91Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB6_ARATH2.787e-4538.67Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB2_ARATH4.754e-4541.15Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLE1_ARATH1.383e-4443.09Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLB5_ARATH3.407e-4337.89Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLB1_ARATH5.811e-4337.50Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH1_ORYSJ1.295e-4242.25Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLG3_ARATH7.351e-3836.60Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878505 ID=FC878505; Name=FC878505; organism=Citrus clementina; type=EST; length=915bp
AAGAACTCCAAATGGCTGATGATGCTCGACAACCCTTGAGCCGTGTGGTG
CCGATACCTTCATCTCACTTGACCCCTTACCGGGTTGTGATCATTCTCCG
TCTTATTATTTTGGGCTTCTTCCTACAGTATCGTGTGACTCATCCAGTGA
AAGATGCATACCCACTGTGGCTAACATCTGTTATTTGTGAGATTTGGTTT
GCCTTATCCTGGCTTCTGGATCAGTTCCCAAAATGGTATCCTGTCAATCG
TGAGACCTATTTAGACCGGCTTGCATTAAGATATGATCGGGAAGGCGAGC
CGTCACAGTTGGCTCCTGTAGATATTTTTGTTAGTACTGTGGATCCCCTG
AAGGAGCCTCCTCTTGTTACAGCAAACACTGTCTTATCTATACTTGCTGT
GGATTACCCTGTCGACAAAGTATCTCGCTATGTATCAGATGATGGTTCAG
CAATGTTAACCTTTGAAGCCCTCTCTGAAACTGCAGAATTTGCTAGGAAG
TGGGTGCCCTTTTGCAAGAAGCACAACATAGAGCCTAGAGCCCCTGAATT
TTATTTTGCCCAGAAGATTGACTACTTGAAGGATAAAATACAGCCTTCTT
TTGTGAAAGAGCGTCGGGCAATGAAGAGAGAATATGAGGAGTTCAAGGTG
CGTATCAATGCCCTTGTTGCCAAGGCACAAAAGATGCCTGAAGAAGGTTG
GACAATGCAGGATGGCACGCCCTGGCCAGGGAATAATCCTAGGGATCATC
CTGGAATGATCCAGGTGTTCTTAGGCCGCAGTGGAGGGCTTGACACTGAT
GGAAATGAGTTACCTAGACTTGTTTATGTCTCTCGAGAGAAGCGTCCTGG
TTTTCTACATCACAAAAAAGCTGGGGCTATGAATGCATTGCAAAGCTCCT
AAAGAAGCATGTGTT
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