FC878505

Overview
NameFC878505
Unique NameFC878505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.825e-35
Identity = 94/265 (35.47%), Postives = 136/265 (51.32%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVIC--EIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG-----TPWPGNNPR-DHPGMIQVFLGRSGGLD-TDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L Y   H +  A    +T ++   +I  A  W      +  PV+R    ++ A +      P     +D+F+ T DP KEPP++  NT LS++A +YP DK+S YVSDDG + LTF AL E A+F+++W+PFCKK+N++ R+PE YF+ +     D        E   +K  YE+ K R+  +V   +   E  +   D        W     R DHP +IQV       +D T    +P L+YVSREK     HH KAGA+N L
Sbjct:   40 LMYHHVHSLVTANNTLITCLLLLSDIVLAFMWATTTSLRLNPVHRTECPEKYAAK------PEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYFSSESHSRSD--------EAENLKMMYEDMKSRVEHVVESGK--VETAFITCDQFRGVFDLWTDKFSRHDHPTIIQVLQNSETDMDNTRKYIMPNLIYVSREKSKVSPHHFKAGALNTL 288          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.196e-33
Identity = 89/264 (33.71%), Postives = 131/264 (49.62%), Query Frame = 3
Query:  123 LQYRVTHPVKDAYPLWLTSVIC--EIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTP-----WPGNNPR-DHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            L Y   H + +A    +T ++   +I  A  W      +  P++R  Y ++ A +      P     +D+F+ T DP KEPP++  NT LS++A +YP  K+S YVSDDG + LT  AL E A+F++ W+PFCK +N++ R+PE YF+ K     D        E   +K  YE+ K R+  +V   +   E  +   D        W     R DHP +I V          +   +P L+YVSREK     HH KAGA+N L
Sbjct:   37 LMYHHVHSIVNANNTLITCLLLLSDIVLAFMWATTTSLRLNPIHRTEYPEKYAAK------PEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYFSSKSHSSSD--------EAENLKMMYEDMKSRVEHVVESGK--VETAFIACDQFSCVFDLWTDKFTRHDHPTIIMVL------QHNETEMMPNLIYVSREKSKVSPHHFKAGALNTL 278          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 3.204e-25
Identity = 68/171 (39.77%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  165 LWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALR----YDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV--DKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKID-YLKDKIQPSFVKERRAMKREYEEFKVRI 656
            +W  +++CE WFA    L+   KW PV   T  + L            E  +L  VD+ V+T DP  EPPLVT NTVLS+LA+DYP   ++++ YVSDDG + LT  AL E A FA  WVPFC+++ +  RAP  YF+              F+ +   MK EY++   RI
Sbjct:   82 VWRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRI 252          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.204e-25
Identity = 68/171 (39.77%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  165 LWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALR----YDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV--DKVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKID-YLKDKIQPSFVKERRAMKREYEEFKVRI 656
            +W  +++CE WFA    L+   KW PV   T  + L            E  +L  VD+ V+T DP  EPPLVT NTVLS+LA+DYP   ++++ YVSDDG + LT  AL E A FA  WVPFC+++ +  RAP  YF+              F+ +   MK EY++   RI
Sbjct:   82 VWRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRI 252          
BLAST of FC878505 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 61/169 (36.09%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  417 KVSRYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG---TPWPGNNPRDHPGMIQVF--------LGRSGGLDTDGNELPRLVYVSREKRPGFLHHKKAGAMNAL 890
            +++ YVSDDG + +T+ AL E A FAR WVPFC++H +  RAP  YFA   ++        F+ +   MK EY++       LV + +   E     Q G     +      +H  +++V         +G  GG        P L+YVSREK PG  HH KAGAMNAL
Sbjct:  173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYFASAPEF--GPADRKFLDDWTFMKSEYDK-------LVRRIEDADETTLLRQGGGEFAEFMDAKRTNHRAIVKVIWDNNSKNRIGEEGG-------FPHLIYVSREKSPGHHHHYKAGAMNAL 325          
The following BLAST results are available for this feature:
BLAST of FC878505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLG1_ARATH5.825e-3535.47Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLG2_ARATH3.196e-3333.71Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLH2_ORYSJ3.204e-2539.77Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI3.204e-2539.77Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH3_ORYSJ2.224e-1836.09Putative cellulose synthase-like protein H3 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878505 ID=FC878505; Name=FC878505; organism=Citrus clementina; type=EST; length=915bp
AAGAACTCCAAATGGCTGATGATGCTCGACAACCCTTGAGCCGTGTGGTG
CCGATACCTTCATCTCACTTGACCCCTTACCGGGTTGTGATCATTCTCCG
TCTTATTATTTTGGGCTTCTTCCTACAGTATCGTGTGACTCATCCAGTGA
AAGATGCATACCCACTGTGGCTAACATCTGTTATTTGTGAGATTTGGTTT
GCCTTATCCTGGCTTCTGGATCAGTTCCCAAAATGGTATCCTGTCAATCG
TGAGACCTATTTAGACCGGCTTGCATTAAGATATGATCGGGAAGGCGAGC
CGTCACAGTTGGCTCCTGTAGATATTTTTGTTAGTACTGTGGATCCCCTG
AAGGAGCCTCCTCTTGTTACAGCAAACACTGTCTTATCTATACTTGCTGT
GGATTACCCTGTCGACAAAGTATCTCGCTATGTATCAGATGATGGTTCAG
CAATGTTAACCTTTGAAGCCCTCTCTGAAACTGCAGAATTTGCTAGGAAG
TGGGTGCCCTTTTGCAAGAAGCACAACATAGAGCCTAGAGCCCCTGAATT
TTATTTTGCCCAGAAGATTGACTACTTGAAGGATAAAATACAGCCTTCTT
TTGTGAAAGAGCGTCGGGCAATGAAGAGAGAATATGAGGAGTTCAAGGTG
CGTATCAATGCCCTTGTTGCCAAGGCACAAAAGATGCCTGAAGAAGGTTG
GACAATGCAGGATGGCACGCCCTGGCCAGGGAATAATCCTAGGGATCATC
CTGGAATGATCCAGGTGTTCTTAGGCCGCAGTGGAGGGCTTGACACTGAT
GGAAATGAGTTACCTAGACTTGTTTATGTCTCTCGAGAGAAGCGTCCTGG
TTTTCTACATCACAAAAAAGCTGGGGCTATGAATGCATTGCAAAGCTCCT
AAAGAAGCATGTGTT
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