FC878509

Overview
NameFC878509
Unique NameFC878509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.443e-65
Identity = 121/246 (49.19%), Postives = 165/246 (67.07%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKD 789
            T G+VI+CKAAV WEA KP  +EEVEVAPP+ +EVR+KI+ T +C +D +        P FP I GHEA G++ESVGE VT L+PGD V+P+F  +C EC  C S + N+C    +++    ++ DG +RF+ KGK I+HFVGTSTF+EYTV H    AKI+ AAPL+KVC++ CG STG+GA +  AK + G + A+F             + +GASRII VD+N  +F +A++ G TE +NPKD
Sbjct:    3 TVGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPIILGHEAAGVIESVGEKVTSLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVEAGSTCAVFGLGGVGLSVVMGCKAAGASRIIAVDINKDKFAKAKELGATECINPKD 247          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.688e-64
Identity = 123/246 (50.00%), Postives = 164/246 (66.67%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKD 789
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++   +C +D +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C + ESN C    +   RG +  DG  RF+  GKPI+HFVG STFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK   G + A+F             + +GA+RII VD+N  +F +A++ G TE +NP+D
Sbjct:    3 TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTL-QDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQD 246          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.205e-64
Identity = 120/247 (48.58%), Postives = 162/247 (65.59%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKDM 792
            T GQVIRCKAA+ W+ G P  IEEVEVAPP+  EVR+K++ T LC T++    +K    L+P I GHE  GIVES+GEGV+ ++PGD V+ +F  +C EC  C + E N C  ++       +++DG SRF+ KGK IYHF  TSTF EYTV     VAKI+  APL+KVC++SCG STGFGA +N AK   G + A+F             + +GA+RIIGVD+N  +F +A++ G TE +NP+D+
Sbjct:    3 TTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSETQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGSSVVMGCKAAGATRIIGVDVNKEKFKKARELGATECLNPQDL 247          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.761e-64
Identity = 124/246 (50.41%), Postives = 164/246 (66.67%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKD 789
            TAG+VI+CKAAV W   +PL IEE+EVAPP+++EVR+KI+ T +C +D +          FP I GHEA G+VESVGEGVT  +PGD V+P+F  +C EC  C + ESN+C    I    GV++ D  SRF+ KGK I++F+ TSTF+EYTV     VAKI+  APL+KVC++ CG STG+G+ VN  K K G + A+F             +V+GASRIIGVDLN  +F  A++ G TE +NPKD
Sbjct:    2 TAGKVIKCKAAVCWGPKQPLSIEEIEVAPPKRHEVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKVIPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLL-DKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVKPGSTCAVFGLGGVGLSVIIGCKVAGASRIIGVDLNSDKFTTAKECGATECINPKD 246          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.761e-64
Identity = 124/246 (50.41%), Postives = 168/246 (68.29%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKD 789
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++   +C +D +        PL P I GHEA GIVES+GEGVT ++PGD V+P+F  +C +C  C   E N+C L  ++  RG M  DG SRF+ +GKPI+HF+GTSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK  +G + A+F             + +GA+RIIGVD+N  +F +A++ G TE VNP+D
Sbjct:    3 TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC-LKNLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQD 245          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 8.380e-64
Identity = 122/246 (49.59%), Postives = 163/246 (66.26%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKD 789
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++   +C +D +       TPL P I GHEA GIVE VGEGVT ++PGD V+P+FT +C +C  C + ESN C    ++  RG M  DG  RF+  GKPI+HF+G STFS+YTV     VAKI+ A+PL+KVC++ CG STG+G  V VAK   G + A+F             + +GA+RII VD+N  +F +A++ G TE +NP+D
Sbjct:    3 TAGKVIKCKAAVLWEVKKPFSIEEVEVAPPKAHEVRIKMVAVGICRSDDHVVSGTLVTPL-PAILGHEAAGIVEGVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCFKNDLSNPRGTM-QDGTRRFTCGGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGPAVKVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQD 246          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 1.094e-63
Identity = 119/248 (47.98%), Postives = 166/248 (66.94%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKDMT 795
            TAG+VI+CKAAV WE  KP  IE++EVAPP+ +EVR+K++ T +C +D +       TPL P + GHE  GIVES+GEGVT ++PGD V+P+F+ +C +C  C   ESN+C   +  T     + DG SRFS +GKPI+HF+ TSTFS+YTV     VAKI+ AAPLDKVC++ CG STG+G+ V VAK   G + A+F             + +GA++II VD+N  +F +A++ G T+ +NP+D T
Sbjct:    3 TAGKVIKCKAAVLWEPHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHAVSGSLFTPL-PAVLGHEGAGIVESIGEGVTCVKPGDKVIPLFSPQCGKCRICKHPESNLCCQTKNLTQPKGALLDGTSRFSCRGKPIHHFISTSTFSQYTVVDDIAVAKIDAAAPLDKVCLIGCGFSTGYGSAVQVAKVTPGSTCAVFGLGGVGLSVVIGCKTAGAAKIIAVDINKDKFAKAKELGATDCINPQDYT 249          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.429e-63
Identity = 122/246 (49.59%), Postives = 164/246 (66.67%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKD 789
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+  EVR+K++   +C TD +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+   +C +C  C + ESN C    ++  +G +  DG SRF+ +GKPI+HF+G STFS+YTV     VAKI+ A+PL KVC++ CG STG+G+ VNVAK   G + A+F             + +GA+RII VD+N  +F +A++ G TE +NP+D
Sbjct:    3 TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAQEVRIKMVAVGICGTDDHVVSGTMVTPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLAVPQCGKCRICKNPESNYCLKNDVSNPQGTL-QDGTSRFTCRGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLAKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQD 246          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.184e-63
Identity = 119/252 (47.22%), Postives = 162/252 (64.29%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKDMTNLFN 807
            TAG+VI+CKAAV WE  KP  I E+EVAPP+ +EVR+KIL + +C +D +      +   FP I GHEA G+VESVGEGVT ++PGD V+P+F  +C EC  C     N+C    +    G++  DG SRF+ +GKP+YHFV T TF+EYTV     V KI+ +APL+KVC++ CG STG+GA +N AK + G + A+F             + +GASRIIG+D+N  +F +A++ G TE VNP D     N
Sbjct:    2 TAGKVIKCKAAVVWEPKKPFSIVEIEVAPPKAHEVRIKILASGICRSDDHVLSGALKVN-FPIILGHEAAGVVESVGEGVTSMKPGDKVIPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLY-DGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINKEKFPKAKELGATECVNPLDYKKPIN 251          
BLAST of FC878509 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 7.094e-63
Identity = 121/246 (49.19%), Postives = 163/246 (66.26%), Query Frame = 1
Query:   52 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGASRIIGVDLNPSRFNEAQKFGVTEFVNPKD 789
            TAG+VI+C+AAV WE  KP  IEEVEVAPP+  EVR+KI+ T +C +D +       TPL P I GHEAGGIVES+GEGVT ++PGD V+P+F  +C +C  C   ESN+C    +   +G ++ DG SRF+ KGKPI+HF+G +TFSEYTV     V KI+ A+PL+KVC++ CG STG+G+ V V K  +G   A               + +GA+RII VD+N  +F +A++ G TE VNP+D
Sbjct:    3 TAGKVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLM-DGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVARGSICACVWSGRVGLSAIIGCKAAGAARIIAVDINKDKFAKAKELGATECVNPQD 246          
The following BLAST results are available for this feature:
BLAST of FC878509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ADH1_CHICK4.443e-6549.19Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1G_HUMAN1.688e-6450.00Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH6_PONAB2.205e-6448.58Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1_RANPE3.761e-6450.41Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH1S_HORSE3.761e-6450.41Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1G_PAPHA8.380e-6449.59Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH1_RAT1.094e-6347.98Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1A_PONAB1.429e-6349.59Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADH1B_UROHA3.184e-6347.22Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1_GEOAT7.094e-6349.19Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ5YP14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878509 ID=FC878509; Name=FC878509; organism=Citrus clementina; type=EST; length=809bp
CTAATTTTACAGGTGTTGAGAGTATCATCATTCATCATCAATATGTCTGG
CACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATGGGAGGCGG
GGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCACAGAAAAAT
GAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATACTGATGTTTA
CTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCATTTTTGGTC
ACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAACTGATCTC
CAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGCAAGGAATG
TCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCTCAGGATCA
ATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGATTCTCGATT
AAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTTCAGTGAATA
CACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGCTGCCCCTC
TTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGTTTTGGGGCT
ACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGCCATTTTTGG
ATTGGGTGCAGTTGGCCTCGCTGCTGCCGAAGGGGCAAGGGTATCAGGGG
CTTCCAGGATCATTGGTGTTGATTTGAACCCAAGCAGATTCAATGAAGCC
CAGAAGTTTGGGGTTACCGAGTTTGTGAATCCAAAGGATATGACAAACCT
GTTCAACAG
back to top