FC878511

Overview
NameFC878511
Unique NameFC878511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BURM7 (Ribosomal RNA large subunit methyltransferase N OS=Burkholderia mallei (strain NCTC 10247) GN=rlmN PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 8.290e-15
Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494
            LL +  + L      LG++++R KQL   I++    + +    L +S R  L+     +G   I     +ADGT K LI + +   +ETV IP E      R T CVSSQ
Sbjct:    9 LLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRA-VIGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEE-----TRGTLCVSSQ 112          

HSP 2 Score: 50.0618 bits (118), Expect = 8.290e-15
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHFFFF 700
            Q GC + C FC+TGK GFSRNLS+ EIVGQ+    F
Sbjct:  112 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLRMAEF 147          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SHEDO (Ribosomal RNA large subunit methyltransferase N OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rlmN PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.294e-15
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LL +  + L+ L  ++G++ +R  QL   IY   V + E    + +  R+ L E    V    I     +ADGT+K  I +   + +ETV IP +D     R T CVSSQV
Sbjct:    8 LLDLDRKGLRALFTEMGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKLAERCVIVAP-EIASFQKSADGTIKFAINVGQGQEVETVYIPEDD-----RATLCVSSQV 112          

HSP 2 Score: 49.2914 bits (116), Expect = 8.294e-15
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L C+FC+TG+ GF+RNL+  EIVGQ+
Sbjct:  111 QVGCALECTFCSTGQQGFNRNLTVSEIVGQI 141          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_THICR (Ribosomal RNA large subunit methyltransferase N OS=Thiomicrospira crunogena (strain XCL-2) GN=rlmN PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 8.296e-15
Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LLGM   EL +    +G++ +R  Q+   I++  V + E    + +S R  L +      R P I     +ADGT+K L++++++  +E V IP E  +G    T C+SSQV
Sbjct:   11 LLGMDRAELTEFFASIGEKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKLSKTALI--RTPKIVSEQRSADGTIKWLLEVDNHNCVEAVFIP-EKSRG----TLCISSQV 115          

HSP 2 Score: 47.7506 bits (112), Expect = 8.296e-15
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L CSFC+TG+ GF+RNL + EIV Q+
Sbjct:  114 QVGCALECSFCSTGQQGFNRNLENWEIVAQM 144          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEPBL (Ribosomal RNA large subunit methyltransferase N OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rlmN PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.307e-15
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            L G + +EL ++ V LG++S+R KQ++H +Y  + +  E F    ++ +  L E   ++ +L + + + + DGT K     E  +  E V IP  D     R T C+SSQV
Sbjct:   16 LKGRTLKELSEIMVSLGEKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKL-EGLCSLTQLTVVKHLKSVDGTQKFTFASEQGKEFEAVWIPSGDGG---RKTICISSQV 122          

HSP 2 Score: 44.2838 bits (103), Expect = 8.307e-15
Identity = 20/31 (64.52%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L C FCAT K  F  NL +HEIV QV
Sbjct:  121 QVGCTLNCKFCATAKLEFQGNLKAHEIVDQV 151          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEPBJ (Ribosomal RNA large subunit methyltransferase N OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rlmN PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.307e-15
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            L G + +EL ++ V LG++S+R KQ++H +Y  + +  E F    ++ +  L E   ++ +L + + + + DGT K     E  +  E V IP  D     R T C+SSQV
Sbjct:   16 LKGRTLKELSEIMVSLGEKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKL-EGLCSLTQLTVVKHLKSVDGTQKFTFASEQGKEFEAVWIPSGDGG---RKTICISSQV 122          

HSP 2 Score: 44.2838 bits (103), Expect = 8.307e-15
Identity = 20/31 (64.52%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L C FCAT K  F  NL +HEIV QV
Sbjct:  121 QVGCTLNCKFCATAKLEFQGNLKAHEIVDQV 151          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_ANASP (Ribosomal RNA large subunit methyltransferase N OS=Anabaena sp. (strain PCC 7120) GN=rlmN PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 3
Query:   93 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            +S TP  +L+ SS  + P    + LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R  + +    +GR  I     A+DGTVK L++L D  ++E VGIP +      RLT CVS+QV
Sbjct:    1 MSATPVTQLTPSSQPQQP---CSPLLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTD-----KRLTVCVSTQV 125          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BURTA (Ribosomal RNA large subunit methyltransferase N OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rlmN PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.077e-14
Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494
            LL +  + L      LG++++R KQL   I++    + +    L +S R  L+     +G   I     +ADGT K LI + +   +ETV IP E      R T CVSSQ
Sbjct:    9 LLDLDAEGLVAYCGGLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRA-VIGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEE-----TRGTLCVSSQ 112          

HSP 2 Score: 50.0618 bits (118), Expect = 1.077e-14
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHFFFF 700
            Q GC + C FC+TGK GFSRNLS+ EIVGQ+    F
Sbjct:  112 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLRMAEF 147          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SOLUE (Ribosomal RNA large subunit methyltransferase N OS=Solibacter usitatus (strain Ellin6076) GN=rlmN PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.079e-14
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            L+GM   +L++ A+   Q  YR KQ++  IY+ +   +     LP   R DL  A   VG   I     + DGT + L+KLED R +ETV +P  +     R T C+SSQV
Sbjct:   19 LVGMDLTDLRE-ALGSDQPGYRAKQIYEAIYRGQAANLVQISTLPAQLREDLA-ARHEVGLPEIAHLYQSTDGTRRYLLKLEDGRTVETVLMPDGE-----RDTICISSQV 122          

HSP 2 Score: 41.9726 bits (97), Expect = 1.079e-14
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGCP+ C FC T   G  R+L++ EIVGQV
Sbjct:  121 QVGCPVDCKFCMTALMGLERSLTAGEIVGQV 151          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Ribosomal RNA large subunit methyltransferase N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.087e-14
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG---PMRLTACVSSQV 497
            LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R ++ E    +GR  +     A DGTVK L++L D ++IETVGIP   E+G     RLT CVS+QV
Sbjct:   24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAEI--PIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQV 135          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEGPC (Ribosomal RNA large subunit methyltransferase N OS=Legionella pneumophila (strain Corby) GN=rlmN PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.399e-14
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L CSFC+T K GF+RNLS+ EI+GQV
Sbjct:  111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141          

HSP 2 Score: 49.2914 bits (116), Expect = 1.399e-14
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LL  +  +L++L +   ++ +R +QL   I++  +++      L +  RN L +    +    I     +ADGT K L+KLE    IETV IP E  +G    T CVSSQV
Sbjct:    8 LLNYNYSQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLA-CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQV 112          
The following BLAST results are available for this feature:
BLAST of FC878511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
RLMN_BURM78.290e-1532.73Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SHEDO8.294e-1533.33Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THICR8.296e-1532.14Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_LEPBL8.307e-1531.53Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_LEPBJ8.307e-1531.53Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ANASP8.326e-1537.78Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BURTA1.077e-1432.73Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SOLUE1.079e-1436.94Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_NOSP71.087e-1442.11Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_LEGPC1.399e-1470.97Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878511 ID=FC878511; Name=FC878511; organism=Citrus clementina; type=EST; length=888bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTGTTT
TTCATGCATCATTACTGACAAATGAAAAATTTTCTTCTTCGAAAGATTAT
TCCTTGATTGAGCATAAGAAATTGTCTTATCCTTTGGGTATTCAGGTAGG
TTGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAA
GAAATCTTTCAAGCCATGAAATTGTTGGGCAGGTTCATTTCTTCTTTTTT
AAGTTTTTAAATGTTGACACATCANAATCCATATAATCTCATTGGCTACA
TTATTTGACAATAAAGTGGTTTTAGTGTGATGAGATTTATCCTGTCTTTT
TATCCAAGCTAGTATCTGTTTCTTCAGCATGATGCAGTTTGTTTCAGGTG
TTAGCAATTGAAGAGATCTTCAGGCATAAGGTGACAAA
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