FC878511
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BURM7 (Ribosomal RNA large subunit methyltransferase N OS=Burkholderia mallei (strain NCTC 10247) GN=rlmN PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 8.290e-15 Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494 LL + + L LG++++R KQL I++ + + L +S R L+ +G I +ADGT K LI + + +ETV IP E R T CVSSQ Sbjct: 9 LLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRA-VIGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEE-----TRGTLCVSSQ 112 HSP 2 Score: 50.0618 bits (118), Expect = 8.290e-15 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHFFFF 700 Q GC + C FC+TGK GFSRNLS+ EIVGQ+ F Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLRMAEF 147
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SHEDO (Ribosomal RNA large subunit methyltransferase N OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rlmN PE=3 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 8.294e-15 Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LL + + L+ L ++G++ +R QL IY V + E + + R+ L E V I +ADGT+K I + + +ETV IP +D R T CVSSQV Sbjct: 8 LLDLDRKGLRALFTEMGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKLAERCVIVAP-EIASFQKSADGTIKFAINVGQGQEVETVYIPEDD-----RATLCVSSQV 112 HSP 2 Score: 49.2914 bits (116), Expect = 8.294e-15 Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L C+FC+TG+ GF+RNL+ EIVGQ+ Sbjct: 111 QVGCALECTFCSTGQQGFNRNLTVSEIVGQI 141
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_THICR (Ribosomal RNA large subunit methyltransferase N OS=Thiomicrospira crunogena (strain XCL-2) GN=rlmN PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 8.296e-15 Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LLGM EL + +G++ +R Q+ I++ V + E + +S R L + R P I +ADGT+K L++++++ +E V IP E +G T C+SSQV Sbjct: 11 LLGMDRAELTEFFASIGEKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKLSKTALI--RTPKIVSEQRSADGTIKWLLEVDNHNCVEAVFIP-EKSRG----TLCISSQV 115 HSP 2 Score: 47.7506 bits (112), Expect = 8.296e-15 Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L CSFC+TG+ GF+RNL + EIV Q+ Sbjct: 114 QVGCALECSFCSTGQQGFNRNLENWEIVAQM 144
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEPBL (Ribosomal RNA large subunit methyltransferase N OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rlmN PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.307e-15 Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 L G + +EL ++ V LG++S+R KQ++H +Y + + E F ++ + L E ++ +L + + + + DGT K E + E V IP D R T C+SSQV Sbjct: 16 LKGRTLKELSEIMVSLGEKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKL-EGLCSLTQLTVVKHLKSVDGTQKFTFASEQGKEFEAVWIPSGDGG---RKTICISSQV 122 HSP 2 Score: 44.2838 bits (103), Expect = 8.307e-15 Identity = 20/31 (64.52%), Postives = 21/31 (67.74%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L C FCAT K F NL +HEIV QV Sbjct: 121 QVGCTLNCKFCATAKLEFQGNLKAHEIVDQV 151
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEPBJ (Ribosomal RNA large subunit methyltransferase N OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rlmN PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.307e-15 Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 L G + +EL ++ V LG++S+R KQ++H +Y + + E F ++ + L E ++ +L + + + + DGT K E + E V IP D R T C+SSQV Sbjct: 16 LKGRTLKELSEIMVSLGEKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKL-EGLCSLTQLTVVKHLKSVDGTQKFTFASEQGKEFEAVWIPSGDGG---RKTICISSQV 122 HSP 2 Score: 44.2838 bits (103), Expect = 8.307e-15 Identity = 20/31 (64.52%), Postives = 21/31 (67.74%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L C FCAT K F NL +HEIV QV Sbjct: 121 QVGCTLNCKFCATAKLEFQGNLKAHEIVDQV 151
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_ANASP (Ribosomal RNA large subunit methyltransferase N OS=Anabaena sp. (strain PCC 7120) GN=rlmN PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15 Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 3 Query: 93 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 +S TP +L+ SS + P + LLG S EL GQ +YRGKQLH IY + V+ + + + +R + + +GR I A+DGTVK L++L D ++E VGIP + RLT CVS+QV Sbjct: 1 MSATPVTQLTPSSQPQQP---CSPLLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTD-----KRLTVCVSTQV 125
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BURTA (Ribosomal RNA large subunit methyltransferase N OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rlmN PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 1.077e-14 Identity = 36/110 (32.73%), Postives = 53/110 (48.18%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494 LL + + L LG++++R KQL I++ + + L +S R L+ +G I +ADGT K LI + + +ETV IP E R T CVSSQ Sbjct: 9 LLDLDAEGLVAYCGGLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRA-VIGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEE-----TRGTLCVSSQ 112 HSP 2 Score: 50.0618 bits (118), Expect = 1.077e-14 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHFFFF 700 Q GC + C FC+TGK GFSRNLS+ EIVGQ+ F Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLRMAEF 147
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SOLUE (Ribosomal RNA large subunit methyltransferase N OS=Solibacter usitatus (strain Ellin6076) GN=rlmN PE=3 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.079e-14 Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 L+GM +L++ A+ Q YR KQ++ IY+ + + LP R DL A VG I + DGT + L+KLED R +ETV +P + R T C+SSQV Sbjct: 19 LVGMDLTDLRE-ALGSDQPGYRAKQIYEAIYRGQAANLVQISTLPAQLREDLA-ARHEVGLPEIAHLYQSTDGTRRYLLKLEDGRTVETVLMPDGE-----RDTICISSQV 122 HSP 2 Score: 41.9726 bits (97), Expect = 1.079e-14 Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGCP+ C FC T G R+L++ EIVGQV Sbjct: 121 QVGCPVDCKFCMTALMGLERSLTAGEIVGQV 151
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Ribosomal RNA large subunit methyltransferase N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.087e-14 Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG---PMRLTACVSSQV 497 LLG S EL GQ +YRGKQLH IY + V+ + + + +R ++ E +GR + A DGTVK L++L D ++IETVGIP E+G RLT CVS+QV Sbjct: 24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAEI--PIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQV 135
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEGPC (Ribosomal RNA large subunit methyltransferase N OS=Legionella pneumophila (strain Corby) GN=rlmN PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.399e-14 Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L CSFC+T K GF+RNLS+ EI+GQV Sbjct: 111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141 HSP 2 Score: 49.2914 bits (116), Expect = 1.399e-14 Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LL + +L++L + ++ +R +QL I++ +++ L + RN L + + I +ADGT K L+KLE IETV IP E +G T CVSSQV Sbjct: 8 LLNYNYSQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLA-CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQV 112 The following BLAST results are available for this feature:
BLAST of FC878511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 229
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878511 ID=FC878511; Name=FC878511; organism=Citrus clementina; type=EST; length=888bpback to top |