FC878511

Overview
NameFC878511
Unique NameFC878511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_NITEU (Ribosomal RNA large subunit methyltransferase N OS=Nitrosomonas europaea GN=rlmN PE=3 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 1.400e-14
Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LL  ++ EL +   ++G++ YR +QL   +++    +      L + FR+ L E    V +LP I    TA DGT K L+       +E V IP      P R T CVSSQV
Sbjct:    4 LLDFNKTELVRFCGEMGEKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMEC--AVVQLPEIVSDHTAGDGTRKWLLSTGAGNAVEMVFIP-----EPSRGTLCVSSQV 108          

HSP 2 Score: 50.0618 bits (118), Expect = 1.400e-14
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L CSFC+TG+ GF+RNLS  EI+GQ+
Sbjct:  107 QVGCALACSFCSTGRQGFNRNLSVAEIIGQL 137          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.420e-14
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            VLLG S  EL+      GQ  YRG+QLH  +Y++  + ++     P+ +R  L +    +GR  I     A DGTVKLL+ L D   IETVGIP  D     RLT CVSSQV
Sbjct:    2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQV 106          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SHESM (Ribosomal RNA large subunit methyltransferase N OS=Shewanella sp. (strain MR-4) GN=rlmN PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.819e-14
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LL +  + ++ L  DLG++ +R  QL   IY   V + E    + +  R  L  A   +    I     +ADGT+K  I + + + +ETV IP +D     R T CVSSQV
Sbjct:    8 LLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLA-ARCEIVAPEISSYQKSADGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQV 112          

HSP 2 Score: 47.7506 bits (112), Expect = 1.819e-14
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV----HFFFF 700
            QVGC L C+FC+T + GF+RNL+  EIVGQ+    HF  F
Sbjct:  111 QVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGF 150          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP6 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.855e-14
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  153 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            DA  LLG S  ELQ   V  GQ SYR KQL+  +Y+R +  +      P+++R  LQ     VGR  I     +  G++K L++L D  +IE VGIP  D     RLT CVSSQ+
Sbjct:    3 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGSIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQL 110          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEGPL (Ribosomal RNA large subunit methyltransferase N OS=Legionella pneumophila (strain Lens) GN=rlmN PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.362e-14
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L CSFC+T K GF+RNLS+ EI+GQV
Sbjct:  111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141          

HSP 2 Score: 48.521 bits (114), Expect = 2.362e-14
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LL  +  +L++L +   ++ +R +QL   I++  +++      L +  RN L +    +    I     +ADGT K L+KLE    IETV IP E  +G    T CVSSQV
Sbjct:    8 LLNYNYLQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLA-CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQV 112          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BURVG (Ribosomal RNA large subunit methyltransferase N OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rlmN PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.363e-14
Identity = 37/110 (33.64%), Postives = 52/110 (47.27%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494
            LL    + L      LG++ +R KQL   I++    + +    L +S R  L+    T+G   I     +ADGT K LI + +   +ETV IP E      R T CVSSQ
Sbjct:    9 LLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRA-TIGMPEIASDHVSADGTRKWLIDVGNGNAVETVFIPEE-----TRGTLCVSSQ 112          

HSP 2 Score: 49.6766 bits (117), Expect = 2.363e-14
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHFFFF 700
            Q GC + C FC+TGK GFSRNLS+ EI+GQ+    F
Sbjct:  112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEF 147          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SHEON (Ribosomal RNA large subunit methyltransferase N OS=Shewanella oneidensis GN=rlmN PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.364e-14
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LL +  + ++ L  DLG++ +R  QL   IY   V + E    + +  R  L  A   +    I     +ADGT+K  I + + + +ETV IP +D     R T CVSSQV
Sbjct:    8 LLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLA-ARCEIVAPEISGYQKSADGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQV 112          

HSP 2 Score: 47.7506 bits (112), Expect = 2.364e-14
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV----HFFFF 700
            QVGC L C+FC+T + GF+RNL+  EIVGQ+    HF  F
Sbjct:  111 QVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGF 150          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_MAGSM (Ribosomal RNA large subunit methyltransferase N OS=Magnetococcus sp. (strain MC-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.367e-14
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVD-LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            L G++ + L  L V+ LG++ +R +QL   ++ +  + ++    L   FR  L     T  R  +     + DGT K L++L D + IETV IP EDE+G    T C+SSQV
Sbjct:    8 LTGLTREALTSLVVEQLGEKPFRARQLWSWLHVKLAQHLDEMSDLSIDFRRKLSALS-TPLRPEVSTHQISRDGTEKWLLRLSDGQQIETVYIP-EDERG----TLCISSQV 113          

HSP 2 Score: 45.0542 bits (105), Expect = 2.367e-14
Identity = 21/33 (63.64%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHF 691
            QVGC L C FC TG  GF+RNL+  EIV QV F
Sbjct:  112 QVGCTLSCPFCHTGAQGFARNLTPSEIVQQVLF 144          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEGPA (Ribosomal RNA large subunit methyltransferase N OS=Legionella pneumophila (strain Paris) GN=rlmN PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.069e-14
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGC L CSFC+T K GF+RNLS+ EI+GQV
Sbjct:  111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141          

HSP 2 Score: 48.1358 bits (113), Expect = 3.069e-14
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LL  +  +L++L +   ++ +R +QL   I++  + +      L +  RN L +    +    I     +ADGT K L+KLE    IETV IP E  +G    T CVSSQV
Sbjct:    8 LLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGICDFAQMTNLGKVLRNKLSQLA-CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQV 112          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROA2 (Ribosomal RNA large subunit methyltransferase N OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rlmN PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 3.074e-14
Identity = 32/111 (28.83%), Postives = 51/111 (45.95%), Query Frame = 3
Query:  177 SEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGW----TVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            S +EL++L   +G+  +R  QLH  +Y  +  +      + +S R  L    +    ++         +A   T K L++L D   +ETV IP E      R T CVS+QV
Sbjct:   11 SRKELEELMQSIGEPRFRAAQLHRWLYSDRASDFHEMTTISKSLRETLDRKYFLPQCSMSSTQCVEDSSADSTTRKFLVQLHDQEAVETVLIPAEG-----RNTVCVSTQV 116          

HSP 2 Score: 49.6766 bits (117), Expect = 3.074e-14
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGCPL CSFCATG  GF+RNL++ EI  QV
Sbjct:  115 QVGCPLHCSFCATGYMGFTRNLNAAEIAEQV 145          
The following BLAST results are available for this feature:
BLAST of FC878511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
RLMN_NITEU1.400e-1433.93Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEEB1.420e-1443.75Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SHESM1.819e-1433.33Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNP61.855e-1441.74Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_LEGPL2.362e-1470.97Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BURVG2.363e-1433.64Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SHEON2.364e-1433.33Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_MAGSM2.367e-1434.82Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_LEGPA3.069e-1470.97Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROA23.074e-1428.83Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878511 ID=FC878511; Name=FC878511; organism=Citrus clementina; type=EST; length=888bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTGTTT
TTCATGCATCATTACTGACAAATGAAAAATTTTCTTCTTCGAAAGATTAT
TCCTTGATTGAGCATAAGAAATTGTCTTATCCTTTGGGTATTCAGGTAGG
TTGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAA
GAAATCTTTCAAGCCATGAAATTGTTGGGCAGGTTCATTTCTTCTTTTTT
AAGTTTTTAAATGTTGACACATCANAATCCATATAATCTCATTGGCTACA
TTATTTGACAATAAAGTGGTTTTAGTGTGATGAGATTTATCCTGTCTTTT
TATCCAAGCTAGTATCTGTTTCTTCAGCATGATGCAGTTTGTTTCAGGTG
TTAGCAATTGAAGAGATCTTCAGGCATAAGGTGACAAA
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