FC878511
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_NITEU (Ribosomal RNA large subunit methyltransferase N OS=Nitrosomonas europaea GN=rlmN PE=3 SV=2) HSP 1 Score: 50.8322 bits (120), Expect = 1.400e-14 Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LL ++ EL + ++G++ YR +QL +++ + L + FR+ L E V +LP I TA DGT K L+ +E V IP P R T CVSSQV Sbjct: 4 LLDFNKTELVRFCGEMGEKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMEC--AVVQLPEIVSDHTAGDGTRKWLLSTGAGNAVEMVFIP-----EPSRGTLCVSSQV 108 HSP 2 Score: 50.0618 bits (118), Expect = 1.400e-14 Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L CSFC+TG+ GF+RNLS EI+GQ+ Sbjct: 107 QVGCALACSFCSTGRQGFNRNLSVAEIIGQL 137
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.420e-14 Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 3 Query: 162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 VLLG S EL+ GQ YRG+QLH +Y++ + ++ P+ +R L + +GR I A DGTVKLL+ L D IETVGIP D RLT CVSSQV Sbjct: 2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQV 106
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SHESM (Ribosomal RNA large subunit methyltransferase N OS=Shewanella sp. (strain MR-4) GN=rlmN PE=3 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 1.819e-14 Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LL + + ++ L DLG++ +R QL IY V + E + + R L A + I +ADGT+K I + + + +ETV IP +D R T CVSSQV Sbjct: 8 LLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLA-ARCEIVAPEISSYQKSADGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQV 112 HSP 2 Score: 47.7506 bits (112), Expect = 1.819e-14 Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV----HFFFF 700 QVGC L C+FC+T + GF+RNL+ EIVGQ+ HF F Sbjct: 111 QVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGF 150
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP6 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rlmN PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.855e-14 Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 3 Query: 153 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 DA LLG S ELQ V GQ SYR KQL+ +Y+R + + P+++R LQ VGR I + G++K L++L D +IE VGIP D RLT CVSSQ+ Sbjct: 3 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGSIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQL 110
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEGPL (Ribosomal RNA large subunit methyltransferase N OS=Legionella pneumophila (strain Lens) GN=rlmN PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 2.362e-14 Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L CSFC+T K GF+RNLS+ EI+GQV Sbjct: 111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141 HSP 2 Score: 48.521 bits (114), Expect = 2.362e-14 Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LL + +L++L + ++ +R +QL I++ +++ L + RN L + + I +ADGT K L+KLE IETV IP E +G T CVSSQV Sbjct: 8 LLNYNYLQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLA-CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQV 112
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BURVG (Ribosomal RNA large subunit methyltransferase N OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rlmN PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 2.363e-14 Identity = 37/110 (33.64%), Postives = 52/110 (47.27%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494 LL + L LG++ +R KQL I++ + + L +S R L+ T+G I +ADGT K LI + + +ETV IP E R T CVSSQ Sbjct: 9 LLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRA-TIGMPEIASDHVSADGTRKWLIDVGNGNAVETVFIPEE-----TRGTLCVSSQ 112 HSP 2 Score: 49.6766 bits (117), Expect = 2.363e-14 Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHFFFF 700 Q GC + C FC+TGK GFSRNLS+ EI+GQ+ F Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEF 147
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SHEON (Ribosomal RNA large subunit methyltransferase N OS=Shewanella oneidensis GN=rlmN PE=3 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.364e-14 Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LL + + ++ L DLG++ +R QL IY V + E + + R L A + I +ADGT+K I + + + +ETV IP +D R T CVSSQV Sbjct: 8 LLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLA-ARCEIVAPEISGYQKSADGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQV 112 HSP 2 Score: 47.7506 bits (112), Expect = 2.364e-14 Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV----HFFFF 700 QVGC L C+FC+T + GF+RNL+ EIVGQ+ HF F Sbjct: 111 QVGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGF 150
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_MAGSM (Ribosomal RNA large subunit methyltransferase N OS=Magnetococcus sp. (strain MC-1) GN=rlmN PE=3 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.367e-14 Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVD-LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 L G++ + L L V+ LG++ +R +QL ++ + + ++ L FR L T R + + DGT K L++L D + IETV IP EDE+G T C+SSQV Sbjct: 8 LTGLTREALTSLVVEQLGEKPFRARQLWSWLHVKLAQHLDEMSDLSIDFRRKLSALS-TPLRPEVSTHQISRDGTEKWLLRLSDGQQIETVYIP-EDERG----TLCISSQV 113 HSP 2 Score: 45.0542 bits (105), Expect = 2.367e-14 Identity = 21/33 (63.64%), Postives = 23/33 (69.70%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVHF 691 QVGC L C FC TG GF+RNL+ EIV QV F Sbjct: 112 QVGCTLSCPFCHTGAQGFARNLTPSEIVQQVLF 144
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_LEGPA (Ribosomal RNA large subunit methyltransferase N OS=Legionella pneumophila (strain Paris) GN=rlmN PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.069e-14 Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGC L CSFC+T K GF+RNLS+ EI+GQV Sbjct: 111 QVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141 HSP 2 Score: 48.1358 bits (113), Expect = 3.069e-14 Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LL + +L++L + ++ +R +QL I++ + + L + RN L + + I +ADGT K L+KLE IETV IP E +G T CVSSQV Sbjct: 8 LLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGICDFAQMTNLGKVLRNKLSQLA-CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQV 112
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROA2 (Ribosomal RNA large subunit methyltransferase N OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rlmN PE=3 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 3.074e-14 Identity = 32/111 (28.83%), Postives = 51/111 (45.95%), Query Frame = 3 Query: 177 SEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGW----TVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 S +EL++L +G+ +R QLH +Y + + + +S R L + ++ +A T K L++L D +ETV IP E R T CVS+QV Sbjct: 11 SRKELEELMQSIGEPRFRAAQLHRWLYSDRASDFHEMTTISKSLRETLDRKYFLPQCSMSSTQCVEDSSADSTTRKFLVQLHDQEAVETVLIPAEG-----RNTVCVSTQV 116 HSP 2 Score: 49.6766 bits (117), Expect = 3.074e-14 Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGCPL CSFCATG GF+RNL++ EI QV Sbjct: 115 QVGCPLHCSFCATGYMGFTRNLNAAEIAEQV 145 The following BLAST results are available for this feature:
BLAST of FC878511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 229
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878511 ID=FC878511; Name=FC878511; organism=Citrus clementina; type=EST; length=888bpback to top |