FC878526

Overview
NameFC878526
Unique NameFC878526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.295e-36
Identity = 71/87 (81.61%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  606 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLT+E
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEE 168          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.329e-35
Identity = 68/87 (78.16%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  606 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            ASD+++ G  +RKKLRL+K+Q+A+LE++FK+H+TLNPKQK ALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLTDE
Sbjct:  145 ASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDE 231          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.329e-35
Identity = 68/87 (78.16%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  606 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            ASD+++ G  +RKKLRL+K+Q+A+LE++FK+H+TLNPKQK ALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLTDE
Sbjct:  145 ASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDE 231          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.960e-35
Identity = 80/138 (57.97%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  471 EYQILNRQASPHSAVSNSFSSGRVVK----RERDLXXXXXXXXXXXXXRASDEDEDGVNA--RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            E  + +   SP  +V++SF     +K      R               RAS+ED D  N   RKKLRL+K+QSA LE+SFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCE+LT+E
Sbjct:  127 EEAVPSMSVSPPDSVTSSFQLDFGIKSYGYERRSNKRDIDDEVERSASRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEE 264          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.454e-34
Identity = 83/165 (50.30%), Postives = 107/165 (64.85%), Query Frame = 3
Query:  399 TTKKNSNSIDVNKGYEESAAAGVAEYQILNRQA----SPHSAVSNSFSSGR--VVKRERDLXXXXXXXXXXXXXRASDEDEDGVN---ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            T ++NS++    +G+  + A        L  +A    SP+SAVS+   + R   V R  D                  +DEDG N   +RKKLRL+K+Q+ +LEE+FK+HSTLNPKQK ALA+QLNLR RQVEVWFQNRRARTKLKQTEVDCE+LK+CC+ LT+E
Sbjct:   73 TAERNSDAGSFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLSGNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEE 237          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.819e-33
Identity = 88/175 (50.29%), Postives = 112/175 (64.00%), Query Frame = 3
Query:  399 TTKKNSNSIDVNKGYEESAAAGVAEYQILNRQA---SPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX-----RAS------DEDEDGV-----NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            ++++NS+     +G + + A       + +  A   SP+S VS S  SG+  K ER+L                  RAS       +DEDG      ++RKKLRL+KEQ+ +LEE+FK+HSTLNPKQK ALA+QLNLR RQVEVWFQNRRARTKLKQTEVDCE+LK+CCE LTDE
Sbjct:   65 SSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVS-SVMSGK--KSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDE 236          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.514e-33
Identity = 94/193 (48.70%), Postives = 113/193 (58.55%), Query Frame = 3
Query:  348 SLSLGLPGEIYPEAATATTKKNS-----------NSI--DVNKGYEESAAA-----GVAEYQILNRQAS--PHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            SL LGL  +    ++T TT               NSI  DV +    + AA     GV   ++   +AS  P SA + S +SG   KRER+L                D+  DG   RKKLRL+K+Q+A+LEE FK HSTLNPKQK ALA +L LRPRQVEVWFQNRRARTKLKQTEVDCE+LK+ CE L DE
Sbjct:    7 SLGLGLASQGSLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASG---KRERELERSGSGVD-------DDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADE 189          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.514e-33
Identity = 94/193 (48.70%), Postives = 113/193 (58.55%), Query Frame = 3
Query:  348 SLSLGLPGEIYPEAATATTKKNS-----------NSI--DVNKGYEESAAA-----GVAEYQILNRQAS--PHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            SL LGL  +    ++T TT               NSI  DV +    + AA     GV   ++   +AS  P SA + S +SG   KRER+L                D+  DG   RKKLRL+K+Q+A+LEE FK HSTLNPKQK ALA +L LRPRQVEVWFQNRRARTKLKQTEVDCE+LK+ CE L DE
Sbjct:    7 SLGLGLASQGSLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASG---KRERELERSGSGVD-------DDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADE 189          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.111e-32
Identity = 94/230 (40.87%), Postives = 122/230 (53.04%), Query Frame = 3
Query:  198 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSL------GLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            MG +D    GL L LGF+        N   N ++ N+ Q +LP    F+P+  L        P  +  E  T  +  NS       G + S   G++   + +            +S G                        SDE+EDG   +RKKLRL+K+QSA LEE+FK+H+TLNPKQK ALA++LNL  RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LT+E
Sbjct:    3 MGKED---LGLSLSLGFSQNHNPLQMNLNPNSSLSNNLQ-RLPWNQTFDPTSDLRKIDVNSFPSTVNCEEDTGVSSPNSTISSTISG-KRSEREGISGTGVGSGDDHDEITPDRGYSRG-----------------------TSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEE 204          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.451e-32
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 3
Query:  606 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            A DED  G  ARKKLRL+KEQS+ LE+SFK+HSTL PKQK  LA +LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCE LT E
Sbjct:  141 ADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRE 227          
The following BLAST results are available for this feature:
BLAST of FC878526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
HOX15_ORYSI6.295e-3681.61Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX1_ORYSJ5.329e-3578.16Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI5.329e-3578.16Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HAT14_ARATH6.960e-3557.97Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
ATHB4_ARATH3.454e-3450.30Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HAT3_ARATH3.819e-3350.29Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX2_ORYSJ6.514e-3348.70Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI6.514e-3348.70Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HAT2_ARATH1.111e-3240.87Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HOX7_ORYSJ1.451e-3278.16Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP19RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878526 ID=FC878526; Name=FC878526; organism=Citrus clementina; type=EST; length=868bp
CAAAAAGAAAAAAGAAAAAAAAAAACAAAAAACAAAAAAGTCTTACTCAT
TCTCTCTTCTTAATAAAGAGGCCCGTTTGCTCCCCCATTTCTCTCAAACT
AAACTCTCCAAATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCT
TCAGAAGTCCCGAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATG
GGTTTTGATGATGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGC
ATCAGCCATAGAAACTACTCCAACAAATAAGGCGAACAATATAAATATTG
TCAACCACCAGCAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCG
CTTAGTCTGGGCCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTAC
TACCAAAAAGAATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAAT
CCGCAGCAGCAGGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCT
CCTCACAGTGCTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAG
GGAGAGAGACCTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCT
CAAGAGCCAGTGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTT
AGGCTCACCAAAGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCA
TAGCACTCTCAATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACC
TACGGCCAAGACAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACA
AAGCTCAAGCAAACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGA
AACACTAACTGATGAAAA
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