FC878526

Overview
NameFC878526
Unique NameFC878526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.316e-25
Identity = 55/83 (66.27%), Postives = 70/83 (84.34%), Query Frame = 3
Query:  618 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            D+     RKKLRLT+EQS LLE+SF+Q+ TLNPKQK+ LA+ L LRPRQ+EVWFQNRRAR+KLKQTE++CE+LK+   +LT+E
Sbjct:  131 DDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEE 213          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.153e-21
Identity = 53/85 (62.35%), Postives = 64/85 (75.29%), Query Frame = 3
Query:  612 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE 866
            D+   G   RKKLRLTKEQS LLEESF Q+ TL PKQK+ LA  L L  RQVEVWFQNRRAR+KLK TE++CE+LK+   +L ++
Sbjct:   59 DDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQ 143          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.757e-21
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 3
Query:  618 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 857
            DE+G + RKKLRLT EQ+ LLE+SF+ H+ L+  +KQ LA +L L  RQVEVWFQNRRARTKLKQTE DC+ L++ C+ L
Sbjct:  110 DEEGAS-RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHL 188          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  642 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 857
            KK RLT EQ  LLE SF++ + L P++K  LAR+L L+PRQV VWFQNRRAR K KQ E D + LK   + L
Sbjct:   77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDAL 148          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  642 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 857
            KK RLT EQ  LLE SF++ + L P++K  LAR+L L+PRQV VWFQNRRAR K KQ E D + LK   + L
Sbjct:   79 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDAL 150          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  612 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 857
            D+  D     KK RLT EQ  LLE+SF+  + L P++K  LA++L L+PRQV VWFQNRRAR K KQ E D + LK   + L
Sbjct:   58 DDFYDDQLPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQL 139          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  612 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 857
            +E  D     KK RLT EQ  +LE SF++ + L P++K  LAR+L + PRQV VWFQNRRAR K KQ E D + LK   + L
Sbjct:   76 EEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDAL 157          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  612 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 857
            +E  D     KK RLT EQ  +LE SF++ + L P++K  LAR+L + PRQV VWFQNRRAR K KQ E D + LK   + L
Sbjct:   76 EEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDAL 157          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.361e-13
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  606 ASDEDEDGVNA-------RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKK 842
            AS+++EDG           KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV +WFQNRRAR K KQ E D + L++
Sbjct:   85 ASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRR 170          
BLAST of FC878526 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.361e-13
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  606 ASDEDEDGVNA-------RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKK 842
            AS+++EDG           KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV +WFQNRRAR K KQ E D + L++
Sbjct:   85 ASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRR 170          
The following BLAST results are available for this feature:
BLAST of FC878526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ATB17_ARATH1.316e-2566.27Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
ATHBX_ARATH1.153e-2162.35Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX26_ORYSJ9.757e-2162.50Putative homeobox-leucine zipper protein HOX26 OS=... [more]
HOX16_ORYSJ8.845e-1456.94Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI8.845e-1456.94Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HAT5_ARATH8.845e-1451.22Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX5_ORYSJ1.970e-1350.00Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI1.970e-1350.00Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX23_ORYSJ3.361e-1347.67Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI3.361e-1347.67Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP19RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878526 ID=FC878526; Name=FC878526; organism=Citrus clementina; type=EST; length=868bp
CAAAAAGAAAAAAGAAAAAAAAAAACAAAAAACAAAAAAGTCTTACTCAT
TCTCTCTTCTTAATAAAGAGGCCCGTTTGCTCCCCCATTTCTCTCAAACT
AAACTCTCCAAATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCT
TCAGAAGTCCCGAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATG
GGTTTTGATGATGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGC
ATCAGCCATAGAAACTACTCCAACAAATAAGGCGAACAATATAAATATTG
TCAACCACCAGCAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCG
CTTAGTCTGGGCCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTAC
TACCAAAAAGAATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAAT
CCGCAGCAGCAGGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCT
CCTCACAGTGCTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAG
GGAGAGAGACCTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCT
CAAGAGCCAGTGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTT
AGGCTCACCAAAGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCA
TAGCACTCTCAATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACC
TACGGCCAAGACAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACA
AAGCTCAAGCAAACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGA
AACACTAACTGATGAAAA
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