FC878532

Overview
NameFC878532
Unique NameFC878532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878532 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  200 WCVCKDGVGDPVLQKALDYACG-AGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 445
            WCV K+   D  LQ A+++ACG  GADC PI   GPC +P  V+   S+  N+Y+ + G+   +C+F+ +A + + +PS   C
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTC 123
[Close]
BLAST of FC878532 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 2 
Query:  188 STANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 445
            S+ +WC+      +  L+ ALD+ACG G  DC  I  + PC+ P+T+ +H S+  NSYFQ+      +C F G+      DPS   C
Sbjct:  365 SSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKC 451
The following BLAST results are available for this feature:
BLAST of FC878532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E13L1_ARATH7.048e-1438.55Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1313_ARATH2.267e-1236.78Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878532 ID=FC878532; Name=FC878532; organism=Citrus clementina; type=EST; length=888bp
CTTTTTCATCTCTCTCTCAGTCCCTCTCAAAGGCCTCAGCTTAGCTGCTG
TGTGTGTTGTGACAAACTTTTCTCGGAGCCAAACAAGCAAGTATTTGTTA
TTATTATCTCTTCTCTAAGCTTCTTTTGCTCATTCAGTGATGGCTGTTTT
GGTGCTTTTAGCTCTCTTCCTTGGCTTCACTGGGCATTCAACTGCAAACT
GGTGTGTTTGCAAAGATGGAGTGGGTGACCCAGTTTTACAAAAAGCTTTG
GACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCTATCCATTCCAATGG
GCCTTGTTACAACCCCAACACTGTCAAAGCTCACTGCAGTTATGCTGTCA
ACAGCTATTTCCAGAGAAAGGGTCAAGCTCAAGGCTCTTGTGATTTTTCC
GGAAGTGCAACCGTTGCCACTACCGATCCCAGCACTGCTGGCTGTTCTTA
TCCTTCAAGTGCCAGCACTTCAGGCACCACCTCAACAACACCAGTCACAG
GTACTCCAGGCACAACCACACCCACAACAACTCCGTCCACTACCACTCCA
ACGACTAACACACCAGGCAGCACCACACCAGGCAGCACCACTCCGGGCAG
CACCACTCCGTACACCACCACACCATCAACTGGAACTGGAGTGTTGGGAG
GAGTTGGTCCTGGTTTAGGCCCTTCGGGATCTGGTATGCCCAACACAGAC
TATAGTCATGGTGGGATGAGACTGCAAAACTCTGCCTTGTCTTTTTTGGT
CGTCCTCTTGTTCTCAGGCTCGATGCTCTTGTGGGGTTGAAAGAAACAAT
CAACATGACATCTACTAGGATGGAGATGTGGTACTATAGTCAGTGTCCTT
GATGCTGGATCTNCATGTGCAAAGATGGAGTATGCATG
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