FC878537

Overview
NameFC878537
Unique NameFC878537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYSC_CANAL (Seryl-tRNA synthetase, cytoplasmic OS=Candida albicans GN=SES1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    8 LNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWG-EKRTEP-----------KLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLL 430
            LN + K+I +     +D  +++ +  ++  +  +   +  EA   +++K+  VGN+VH+SV  S DE NN +VRTW  E   +P           KL +H  L+ L G  D ++G  I G RG++L+  GV LNQALIN+GL FL  K Y  L
Sbjct:   56 LNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGY-DPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPL 207          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_THEPX (Seryl-tRNA synthetase OS=Thermoanaerobacter sp. (strain X514) GN=serS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = 2
Query:    2 NHLNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYT 424
            N  N  +  I++LK  GKD S+++ +  E+  +  + E EV+E    ++  L  + N+ H+SVP+ + + +N  +R WGE R    EP  K H E+ + L I D +  A + G R  + KG G RL +ALINF LD  +EK  YT
Sbjct:   49 NRRNVESDNIAKLKREGKDASDLIAEMKELSDKIKEMEQEVKEVEEELERILWTIPNIPHESVPIGDSDEDNVEIRRWGEPRKFDFEP--KPHWEIGQELDILDFEAAARVTGSRFTFYKGLGARLERALINFMLDLHIEKHGYT 191          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_THEP3 (Seryl-tRNA synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=serS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = 2
Query:    2 NHLNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYT 424
            N  N  +  I++LK  GKD S+++ +  E+  +  + E EV+E    ++  L  + N+ H+SVP+ + + +N  +R WGE R    EP  K H E+ + L I D +  A + G R  + KG G RL +ALINF LD  +EK  YT
Sbjct:   49 NRRNVESDNIAKLKREGKDASDLIAEMKELSDKIKEMEQEVKEVEEELERILWTIPNIPHESVPIGDSDEDNVEIRRWGEPRKFDFEP--KPHWEIGQELDILDFEAAARVTGSRFTFYKGLGARLERALINFMLDLHIEKHGYT 191          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_HALOH (Seryl-tRNA synthetase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=serS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYT 424
            N ++ +I +LK  G+D S+++ +  E+       + E+R     ++  +  + N+ HDSVPV  DE +N  VR WGE R  + + K H +L E L I D ++G+ ++G R  +LKG G RL ++LI+F +D   +  YT
Sbjct:   52 NVVSSKIGELKRAGEDASDIIAEMKEVSATIKKYDEELRGIEERLQQVVLSIPNMPHDSVPVGEDEDDNVEVRRWGEPRKFDFEFKPHWDLGEALDILDFERGSKVSGARFTFLKGAGARLERSLISFMIDHHTQNGYT 190          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_GEOSW (Seryl-tRNA synthetase OS=Geobacillus sp. (strain WCH70) GN=serS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 2
Query:    2 NHLNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            N  N++++QI+ LK   KD   ++ +  ++  +    + E+R+    + A L  + N+ H+SVPV   E +N  VR WGE R+   EP  K H ++ E LGI D ++ A + G R  + KG G RL +ALINF LD
Sbjct:   50 NKRNEVSQQIAVLKREKKDADHLIAEMRDVGDRIKTMDDEIRQVEEELNALLLSIPNIPHESVPVGKSEEDNVEVRKWGEPRSFSFEP--KPHWDIAEQLGILDFERAAKVTGSRFVFYKGLGARLERALINFMLD 183          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_UNCMA (Seryl-tRNA synthetase OS=Uncultured methanogenic archaeon RC-I GN=serS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEK-RTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYT 424
            N+I+++I++ +  GKD S ++ +  +I +Q  + E E+ E+   V   L  + N++ DSVPV  D+  N  V+ WGE  + + ++KNH  L    G AD ++ A +AG   ++LKG+ V L+ AL  F +D L K+ +T
Sbjct:   55 NEISREINEARKAGKDTSALMAEARDIPRQIKEAETEMEESRNKVHYYLMRLPNILDDSVPVGKDDTENVEVKRWGEPVQKDFEIKNHGLLAVEHGWADFERAAKVAGAGFYFLKGNMVLLDMALQRFAMDLLVKRGFT 193          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_PELTS (Seryl-tRNA synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=serS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.435e-17
Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = 2
Query:    2 NHLNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEP-KLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            N  N ++++I +LK  GKD  EMV +  ++ +Q  + + E++E    ++  L  + N+ H+SVP     A N +VRTWG+ R      + H E+ E L I D ++G  +AG R  + KG G RL +A+INF LD
Sbjct:   49 NRRNVVSEEIGRLKKSGKDAPEMVLEMRDLSRQIKEIDEEIKELDGRLQDMLLNIPNIPHESVPEGAGAAENPVVRTWGKPRDFGFTPRPHWEIGEQLDIIDFERGGKVAGARFSFYKGYGARLERAVINFMLD 182          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYSC_YEAST (Seryl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=SES1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.435e-17
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTE-----------PKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSY 421
            NK+ K I       +D S ++ +  ++ QQ  +   + ++    +K K+  VGN+VH SV VSNDE NN +VRTW  +  E           P   +H E++  L   D  +G  I G RG++ +  GV LNQALIN+GL FL  K Y
Sbjct:   57 NKLQKDIGLKFKNKEDASGLLAEKEKLTQQKKELTEKEQQEDKDLKKKVFQVGNIVHPSVVVSNDEENNELVRTWKPEDLEAVGPIASVTGKPASLSHHEILLRLDGYDPDRGVKICGHRGYFFRNYGVFLNQALINYGLQFLAAKGY 204          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_DESRM (Seryl-tRNA synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=serS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.098e-17
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 2
Query:    2 NHLNKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKR-TEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            N  N ++++I +LK  G+D  E   +  ++ Q+  D + E+R     ++  L  + N+ H+SVPV  DE +N  +R WG+ R  E + K H +L E L I D ++G  + G R  + KG G RL +ALINF LD
Sbjct:   49 NTRNVVSQEIGKLKKAGQDAEEKTLEMRKVSQKIKDMDDEIRNIEEKLQEILLSIPNIPHESVPVGKDENDNVEIRRWGKPRGFEFEPKPHWDLGEDLNILDFERGGKVTGARFSFYKGMGARLERALINFMLD 182          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_CENSY (Seryl-tRNA synthetase OS=Cenarchaeum symbiosum GN=serS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.270e-17
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLL 430
            N   +Q++Q K  G D +  + +  ++ ++    E E + A +        + N++  SVP   DE  N ++R W    T    K H EL    G+ D+K+ A ++G R +YLKG  VRLNQALI+  LDFL  + YTL+
Sbjct:   52 NFAGRQVAQFKRDGVDTTAAIKEMKDLSEKLYQAEGEQQSAESEYLELAWTIPNMIDKSVPRGPDETANVVLRKWVGTPTPSVPKGHEELAVGRGLLDMKRAAKVSGARFYYLKGSLVRLNQALISHSLDFLGSRGYTLV 191          
The following BLAST results are available for this feature:
BLAST of FC878537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
SYSC_CANAL1.430e-1735.95Seryl-tRNA synthetase, cytoplasmic OS=Candida albi... [more]
SYS_THEPX1.868e-1736.55Seryl-tRNA synthetase OS=Thermoanaerobacter sp. (s... [more]
SYS_THEP31.868e-1736.55Seryl-tRNA synthetase OS=Thermoanaerobacter pseude... [more]
SYS_HALOH1.868e-1734.53Seryl-tRNA synthetase OS=Halothermothrix orenii (s... [more]
SYS_GEOSW1.868e-1736.76Seryl-tRNA synthetase OS=Geobacillus sp. (strain W... [more]
SYS_UNCMA4.161e-1734.53Seryl-tRNA synthetase OS=Uncultured methanogenic a... [more]
SYS_PELTS5.435e-1736.57Seryl-tRNA synthetase OS=Pelotomaculum thermopropi... [more]
SYSC_YEAST5.435e-1736.49Seryl-tRNA synthetase, cytoplasmic OS=Saccharomyce... [more]
SYS_DESRM7.098e-1736.57Seryl-tRNA synthetase OS=Desulfotomaculum reducens... [more]
SYS_CENSY9.270e-1734.29Seryl-tRNA synthetase OS=Cenarchaeum symbiosum GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP21RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878537 ID=FC878537; Name=FC878537; organism=Citrus clementina; type=EST; length=580bp
CAACCATTTGAACAAAATCAATAAGCAAATCTCTCAGCTCAAACTCTTTG
GTAAGGATTTCTCTGAGATGGTTACAAAGACAAATGAGATCAAGCAACAA
TCGGCAGATAAAGAAGTTGAGGTCCGTGAGGCTTGGGCTGCAGTAAAAGC
AAAGCTGGAAGTAGTTGGAAACCTTGTGCATGATTCAGTACCAGTCAGCA
ATGATGAAGCAAATAATGCTATAGTTAGAACATGGGGTGAGAAAAGGACG
GAGCCAAAACTGAAGAATCATGTTGAGCTTGTTGAGCTTCTTGGCATTGC
GGATCTGAAGAAAGGTGCTGATATAGCAGGAGGAAGAGGTTTCTATCTGA
AAGGAGATGGTGTACGGCTTAATCAAGCTTTGATTAATTTTGGTCTTGAT
TTTTTGGAGAAAAAGAGTTATACATTGTTACATACTCCACCTCCTCCGCC
AGTTCTTTCACCACCACCACCGCCGCCGCCACCAGTATACTCGCCACCTC
CTCCGCCACCGTCACCACCACCACCAGTATACTTGCCACCTCCTCCTCCT
CCACCACCCCCACCTCCTTCGCCACCTCCG
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