FC878537

Overview
NameFC878537
Unique NameFC878537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_CAMFF (Seryl-tRNA synthetase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=serS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLH 433
            N  +K++  L   G D + + T+  E K+        V E    +      V N++ D VP+  D+ +N  ++T  E R      K H EL E LG  D   GA ++G R   L+ DG RL++AL+NF +DF   + + L++
Sbjct:   53 NAKSKEVGILARSGADTTLLKTELEENKKLMQTASNLVSELETKLDTVASRVPNVIDDDVPLGKDDNDNVCIKTILEPREFNFTPKEHFELGENLGWLDFATGAKLSGSRFTVLRSDGARLSRALVNFMIDFNTARGFELVN 194          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BDEBA (Seryl-tRNA synthetase OS=Bdellovibrio bacteriovorus GN=serS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWG-EKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            NK++ +I ++K  G D S ++ + + +K Q  + E +  EA   V     V+ N  H SVPV + E +N  ++  G   +   K K H EL E L I D ++     G R  +LKG   ++ +ALI F +D
Sbjct:   60 NKLSGEIGKIKREGGDASAILAEVDVLKTQVKELEAKAAEADQQVTNLALVIPNKPHSSVPVGSSEKDNKEIKVVGTPTQFSFKAKEHWELGEALNIIDFERAGKTTGTRFAFLKGAAAQMERALIQFMMD 190          
The following BLAST results are available for this feature:
BLAST of FC878537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
SYS_CAMFF9.927e-1130.99Seryl-tRNA synthetase OS=Campylobacter fetus subsp... [more]
SYS_BDEBA9.927e-1132.06Seryl-tRNA synthetase OS=Bdellovibrio bacteriovoru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP21RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878537 ID=FC878537; Name=FC878537; organism=Citrus clementina; type=EST; length=580bp
CAACCATTTGAACAAAATCAATAAGCAAATCTCTCAGCTCAAACTCTTTG
GTAAGGATTTCTCTGAGATGGTTACAAAGACAAATGAGATCAAGCAACAA
TCGGCAGATAAAGAAGTTGAGGTCCGTGAGGCTTGGGCTGCAGTAAAAGC
AAAGCTGGAAGTAGTTGGAAACCTTGTGCATGATTCAGTACCAGTCAGCA
ATGATGAAGCAAATAATGCTATAGTTAGAACATGGGGTGAGAAAAGGACG
GAGCCAAAACTGAAGAATCATGTTGAGCTTGTTGAGCTTCTTGGCATTGC
GGATCTGAAGAAAGGTGCTGATATAGCAGGAGGAAGAGGTTTCTATCTGA
AAGGAGATGGTGTACGGCTTAATCAAGCTTTGATTAATTTTGGTCTTGAT
TTTTTGGAGAAAAAGAGTTATACATTGTTACATACTCCACCTCCTCCGCC
AGTTCTTTCACCACCACCACCGCCGCCGCCACCAGTATACTCGCCACCTC
CTCCGCCACCGTCACCACCACCACCAGTATACTTGCCACCTCCTCCTCCT
CCACCACCCCCACCTCCTTCGCCACCTCCG
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