FC878537
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURM1 (Seryl-tRNA synthetase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=serS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14 Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400 N ++KQI +K G+D S ++ + I + ++ E A + L + NL H+SVPV DEA+N VR WG R + +K+HV++ LG+ D + GA +AG R L+G RL++AL F LD Sbjct: 52 NTLSKQIGAMKAKGEDTSAVMAEVGGIGDEMKASAAKLDEIQARLSELLLGMPNLAHESVPVGKDEADNVEVRRWGTPRQFDFDVKDHVDIGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMLD 181
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURCE (Seryl-tRNA synthetase OS=Burkholderia cepacia GN=serS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14 Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400 N ++KQI +K G+D S ++ + I + ++ E A + L + NL H+SVPV DEA+N VR WG R + +K+HV++ LG+ D + GA +AG R L+G RL++AL F LD Sbjct: 52 NTLSKQIGAMKAKGEDTSAVMAEVGGIGDEMKASAAKLDEIQARLSELLLGMPNLAHESVPVGKDEADNVEVRRWGTPRQFDFDVKDHVDIGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMLD 181
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BACA2 (Seryl-tRNA synthetase OS=Bacillus amyloliquefaciens (strain FZB42) GN=serS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14 Identity = 45/142 (31.69%), Postives = 77/142 (54.23%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYT 424 N++++Q++ LK KD ++ + E+ ++ + E+R ++ L + N+ HDSVPV E +N +R WGE EP K H ++ + L I D ++ + + G R + KG G RL +AL NF LD +++ YT Sbjct: 53 NEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTVETTLETILLSIPNIPHDSVPVGETEDDNIEIRKWGEAPAFSYEP--KPHWDIADHLNILDFERASKVTGSRFVFYKGLGARLERALYNFMLDLHVDEYDYT 192
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_SHELP (Seryl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=serS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14 Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGE-KRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400 N I+K I Q K G+D + ++ K ++ + + KE E+++ + A V NL +S P+ DE +N +R WGE K+ + +K+HV+L E D K I G R +KG R+++AL F LD Sbjct: 52 NAISKSIGQAKAKGEDVAPIMAKVGDLGAELSSKEAELKQLLEELNAIAMSVPNLPDESAPIGADENDNVEIRRWGEPKQFDFDVKDHVDLGEQHAGLDFKSAVKITGSRFIVMKGQIARMHRALTQFMLD 182
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_SHEDO (Seryl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=serS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14 Identity = 49/140 (35.00%), Postives = 71/140 (50.71%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYT 424 N I+K I Q K G+D S ++ + ++ + K+ E+ E A+ NL +SVP DE N VR WG R+ + +K+H++L E LG D K I G R +KG RLN+AL F LD ++ YT Sbjct: 52 NAISKSIGQAKSRGEDVSAIMAQVGDLGSKLDAKKAELAELLHAINLIAMSTPNLPDESVPCGKDETENLEVRRWGTPRSFDFPVKDHLDLGEALGGLDFKSAVKITGSRFIVMKGQLARLNRALGQFMLDLHTQEHGYT 191
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_FRAP2 (Seryl-tRNA synthetase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=serS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14 Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKR---TEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYTLLH 433 N I+K+I + K G+D S++ K N+I + E +++ + L + NL D VPV DE+ N ++ WG R E + K+H ++ E+L + D K A I G R LK +L++AL F LD EK Y L+ Sbjct: 52 NTISKEIGKRKSKGEDASDIFAKVNDINDELKVIEKVLKDLQDCINNTLLSMPNLPADDVPVGKDESENVEIKKWGTPREFHPEAQAKDHADIGEILNMIDFKAAAKITGSRFVVLKSKIAKLHRALTQFMLDMHTEKHGYEELY 196
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURCJ (Seryl-tRNA synthetase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=serS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14 Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD-FLEKKSYTLLHT 436 N ++KQI +K G+D S ++ + + I E ++ E A + + + N+ H+SVPV DEA+N VR WG R + ++K+HV++ LG+ D + GA +AG R L+G RL++AL F +D ++ YT +T Sbjct: 52 NSLSKQIGAMKGKGEDTSAVMAEVSGIGDDMKASEAKLGEIQARLSDLMLGMPNVAHESVPVGKDEADNVEVRRWGTPRQFDFEVKDHVDVGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMIDTHTQQHGYTETYT 194
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_ACHLI (Seryl-tRNA synthetase OS=Acholeplasma laidlawii (strain PG-8A) GN=serS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14 Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGE-KRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400 N+ +K+I +LK +D S ++ K IK E+++ E + +L V+ N+ D VPV DE+ N ++ WG + + ++K+H +L E L I D ++ I G R KG G RL +ALINF +D Sbjct: 53 NEYSKEIGELKRQKQDASHVLLKVESIKSDIPALELKLGEIDEKINKELIVLPNIPADDVPVGKDESANIEIKKWGTIRHFDFEVKDHTQLGEALNILDFERATKITGPRFVVDKGLGARLERALINFMID 183
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_SYNR3 (Seryl-tRNA synthetase OS=Synechococcus sp. (strain RCC307) GN=serS PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13 Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 2 Query: 77 KTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYT 424 K N IKQQ A E E + A ++ +L + NL P EA+N V+ WGE R L+ H +L + LG+ + ++ IA R L GDG RL +ALI+F LD K YT Sbjct: 79 KGNRIKQQVAVLEEEEKGLEAKLREQLLALPNLPSADAPEGKSEADNVEVKRWGEPRQGKDLEEHWQLADRLGLFETERSVRIAQSRFITLMGDGARLERALISFMLDLHSTKGYT 194
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURVG (Seryl-tRNA synthetase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=serS PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13 Identity = 49/142 (34.51%), Postives = 80/142 (56.34%), Query Frame = 2 Query: 11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLH 433 N ++KQI +K G+D S ++ + I + EV++ E + + + + N+ H+SVPV DEA+N +R WG R + +K+HV++ LG+ D + GA +AG R L+G RL++AL F LD ++T LH Sbjct: 52 NSLSKQIGAMKGKGEDTSAVMAEVGGIGDEMKASEVKLGEIQSRLSDLMLGMPNIAHESVPVGKDEADNVELRRWGTPRQFDFDVKDHVDVGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMLD-----THTQLH 187 The following BLAST results are available for this feature:
BLAST of FC878537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 292
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878537 ID=FC878537; Name=FC878537; organism=Citrus clementina; type=EST; length=580bpback to top |