FC878537

Overview
NameFC878537
Unique NameFC878537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURM1 (Seryl-tRNA synthetase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=serS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            N ++KQI  +K  G+D S ++ +   I  +      ++ E  A +   L  + NL H+SVPV  DEA+N  VR WG  R  +  +K+HV++   LG+ D + GA +AG R   L+G   RL++AL  F LD
Sbjct:   52 NTLSKQIGAMKAKGEDTSAVMAEVGGIGDEMKASAAKLDEIQARLSELLLGMPNLAHESVPVGKDEADNVEVRRWGTPRQFDFDVKDHVDIGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMLD 181          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURCE (Seryl-tRNA synthetase OS=Burkholderia cepacia GN=serS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            N ++KQI  +K  G+D S ++ +   I  +      ++ E  A +   L  + NL H+SVPV  DEA+N  VR WG  R  +  +K+HV++   LG+ D + GA +AG R   L+G   RL++AL  F LD
Sbjct:   52 NTLSKQIGAMKAKGEDTSAVMAEVGGIGDEMKASAAKLDEIQARLSELLLGMPNLAHESVPVGKDEADNVEVRRWGTPRQFDFDVKDHVDIGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMLD 181          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BACA2 (Seryl-tRNA synthetase OS=Bacillus amyloliquefaciens (strain FZB42) GN=serS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 45/142 (31.69%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYT 424
            N++++Q++ LK   KD   ++ +  E+ ++    + E+R     ++  L  + N+ HDSVPV   E +N  +R WGE      EP  K H ++ + L I D ++ + + G R  + KG G RL +AL NF LD  +++  YT
Sbjct:   53 NEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTVETTLETILLSIPNIPHDSVPVGETEDDNIEIRKWGEAPAFSYEP--KPHWDIADHLNILDFERASKVTGSRFVFYKGLGARLERALYNFMLDLHVDEYDYT 192          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_SHELP (Seryl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=serS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGE-KRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            N I+K I Q K  G+D + ++ K  ++  + + KE E+++    + A    V NL  +S P+  DE +N  +R WGE K+ +  +K+HV+L E     D K    I G R   +KG   R+++AL  F LD
Sbjct:   52 NAISKSIGQAKAKGEDVAPIMAKVGDLGAELSSKEAELKQLLEELNAIAMSVPNLPDESAPIGADENDNVEIRRWGEPKQFDFDVKDHVDLGEQHAGLDFKSAVKITGSRFIVMKGQIARMHRALTQFMLD 182          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_SHEDO (Seryl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=serS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 49/140 (35.00%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYT 424
            N I+K I Q K  G+D S ++ +  ++  +   K+ E+ E   A+        NL  +SVP   DE  N  VR WG  R+ +  +K+H++L E LG  D K    I G R   +KG   RLN+AL  F LD   ++  YT
Sbjct:   52 NAISKSIGQAKSRGEDVSAIMAQVGDLGSKLDAKKAELAELLHAINLIAMSTPNLPDESVPCGKDETENLEVRRWGTPRSFDFPVKDHLDLGEALGGLDFKSAVKITGSRFIVMKGQLARLNRALGQFMLDLHTQEHGYT 191          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_FRAP2 (Seryl-tRNA synthetase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=serS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKR---TEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYTLLH 433
            N I+K+I + K  G+D S++  K N+I  +    E  +++    +   L  + NL  D VPV  DE+ N  ++ WG  R    E + K+H ++ E+L + D K  A I G R   LK    +L++AL  F LD   EK  Y  L+
Sbjct:   52 NTISKEIGKRKSKGEDASDIFAKVNDINDELKVIEKVLKDLQDCINNTLLSMPNLPADDVPVGKDESENVEIKKWGTPREFHPEAQAKDHADIGEILNMIDFKAAAKITGSRFVVLKSKIAKLHRALTQFMLDMHTEKHGYEELY 196          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURCJ (Seryl-tRNA synthetase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=serS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD-FLEKKSYTLLHT 436
            N ++KQI  +K  G+D S ++ + + I       E ++ E  A +   +  + N+ H+SVPV  DEA+N  VR WG  R  + ++K+HV++   LG+ D + GA +AG R   L+G   RL++AL  F +D   ++  YT  +T
Sbjct:   52 NSLSKQIGAMKGKGEDTSAVMAEVSGIGDDMKASEAKLGEIQARLSDLMLGMPNVAHESVPVGKDEADNVEVRRWGTPRQFDFEVKDHVDVGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMIDTHTQQHGYTETYT 194          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_ACHLI (Seryl-tRNA synthetase OS=Acholeplasma laidlawii (strain PG-8A) GN=serS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGE-KRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 400
            N+ +K+I +LK   +D S ++ K   IK      E+++ E    +  +L V+ N+  D VPV  DE+ N  ++ WG  +  + ++K+H +L E L I D ++   I G R    KG G RL +ALINF +D
Sbjct:   53 NEYSKEIGELKRQKQDASHVLLKVESIKSDIPALELKLGEIDEKINKELIVLPNIPADDVPVGKDESANIEIKKWGTIRHFDFEVKDHTQLGEALNILDFERATKITGPRFVVDKGLGARLERALINFMID 183          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_SYNR3 (Seryl-tRNA synthetase OS=Synechococcus sp. (strain RCC307) GN=serS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 2
Query:   77 KTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYT 424
            K N IKQQ A  E E +   A ++ +L  + NL     P    EA+N  V+ WGE R    L+ H +L + LG+ + ++   IA  R   L GDG RL +ALI+F LD    K YT
Sbjct:   79 KGNRIKQQVAVLEEEEKGLEAKLREQLLALPNLPSADAPEGKSEADNVEVKRWGEPRQGKDLEEHWQLADRLGLFETERSVRIAQSRFITLMGDGARLERALISFMLDLHSTKGYT 194          
BLAST of FC878537 vs. ExPASy Swiss-Prot
Match: SYS_BURVG (Seryl-tRNA synthetase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=serS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 49/142 (34.51%), Postives = 80/142 (56.34%), Query Frame = 2
Query:   11 NKINKQISQLKLFGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLH 433
            N ++KQI  +K  G+D S ++ +   I  +    EV++ E  + +   +  + N+ H+SVPV  DEA+N  +R WG  R  +  +K+HV++   LG+ D + GA +AG R   L+G   RL++AL  F LD     ++T LH
Sbjct:   52 NSLSKQIGAMKGKGEDTSAVMAEVGGIGDEMKASEVKLGEIQSRLSDLMLGMPNIAHESVPVGKDEADNVELRRWGTPRQFDFDVKDHVDVGTPLGL-DFETGAKLAGARFTMLRGPIARLHRALAQFMLD-----THTQLH 187          
The following BLAST results are available for this feature:
BLAST of FC878537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
SYS_BURM17.345e-1436.64Seryl-tRNA synthetase OS=Burkholderia multivorans ... [more]
SYS_BURCE7.345e-1436.64Seryl-tRNA synthetase OS=Burkholderia cepacia GN=s... [more]
SYS_BACA27.345e-1431.69Seryl-tRNA synthetase OS=Bacillus amyloliquefacien... [more]
SYS_SHELP9.593e-1433.59Seryl-tRNA synthetase OS=Shewanella loihica (strai... [more]
SYS_SHEDO9.593e-1435.00Seryl-tRNA synthetase OS=Shewanella denitrificans ... [more]
SYS_FRAP29.593e-1433.10Seryl-tRNA synthetase OS=Francisella philomiragia ... [more]
SYS_BURCJ9.593e-1434.03Seryl-tRNA synthetase OS=Burkholderia cepacia (str... [more]
SYS_ACHLI9.593e-1434.35Seryl-tRNA synthetase OS=Acholeplasma laidlawii (s... [more]
SYS_SYNR31.253e-1338.79Seryl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYS_BURVG1.253e-1334.51Seryl-tRNA synthetase OS=Burkholderia vietnamiensi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP21RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878537 ID=FC878537; Name=FC878537; organism=Citrus clementina; type=EST; length=580bp
CAACCATTTGAACAAAATCAATAAGCAAATCTCTCAGCTCAAACTCTTTG
GTAAGGATTTCTCTGAGATGGTTACAAAGACAAATGAGATCAAGCAACAA
TCGGCAGATAAAGAAGTTGAGGTCCGTGAGGCTTGGGCTGCAGTAAAAGC
AAAGCTGGAAGTAGTTGGAAACCTTGTGCATGATTCAGTACCAGTCAGCA
ATGATGAAGCAAATAATGCTATAGTTAGAACATGGGGTGAGAAAAGGACG
GAGCCAAAACTGAAGAATCATGTTGAGCTTGTTGAGCTTCTTGGCATTGC
GGATCTGAAGAAAGGTGCTGATATAGCAGGAGGAAGAGGTTTCTATCTGA
AAGGAGATGGTGTACGGCTTAATCAAGCTTTGATTAATTTTGGTCTTGAT
TTTTTGGAGAAAAAGAGTTATACATTGTTACATACTCCACCTCCTCCGCC
AGTTCTTTCACCACCACCACCGCCGCCGCCACCAGTATACTCGCCACCTC
CTCCGCCACCGTCACCACCACCACCAGTATACTTGCCACCTCCTCCTCCT
CCACCACCCCCACCTCCTTCGCCACCTCCG
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