FC878540

Overview
NameFC878540
Unique NameFC878540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: FYV10_PHANO (Protein FYV10 OS=Phaeosphaeria nodorum GN=FYV10 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22
Identity = 70/201 (34.83%), Postives = 103/201 (51.24%), Query Frame = 2
Query:  320 QGLKRKDLVDIEVFQEAKKVIDAL-QNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR--GENNL-RAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCY----------EDDCTKEDPLSQESFRKLASPLPYS*QHHS 880
            Q  + +DLVD++ F    K+  +L +    + AL WC ++   LKK  S  EF+LRLQ++IELVR  GE  L  A  +A+KYL+  G   +  L++    LA+K   +   Y +L+ P +W  L + F      LY +   PLL+I L AGLSAL TP C+              T   P+      +LA  +PY+  HH+
Sbjct:  150 QSKEIEDLVDVDAFIACHKIERSLREGMSTSLALDWCKEHSKELKKGGSMLEFELRLQQYIELVRQGGETKLVEARVHAKKYLSTSGDFEL--LRKAAGLLAYKPWDDVEPYVSLYSPSRWAHLANLFLSTHHNLYSLPPRPLLHIALSAGLSALKTPACHSAYTSSSANASSATTSVCPICSTELNELARNVPYA--HHT 346          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: FYV10_YARLI (Protein FYV10 OS=Yarrowia lipolytica GN=FYV10 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21
Identity = 72/241 (29.88%), Postives = 120/241 (49.79%), Query Frame = 2
Query:  116 TQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEI--TSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDAL-QNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQE 829
            T  T   ++EH  L V F++ K+T     +  EK+   T +   + D    + FS+        +  S  Q      LVD+ +  +   V  +L Q    A  LAWCS+N+S L+K++S  EF++RLQ ++ELV+      A+ Y +++L+     H++E+Q+    LAF   TE + YK L+  ++W+ L  +F Q F  ++G++    L   L  GLS L T  C       E P++ +
Sbjct:   94 TLTTTKARVEH--LNVIFDNEKETDPEKQKETEKKWLRTRLERLLTDYFLRQGFSE--------TAKSFAQNRGITSLVDVTILDQCISVETSLRQRHSTAECLAWCSENRSFLRKTRSSLEFEVRLQHYVELVKSGRVEDALKYCQRFLSKNADIHLREIQQAAGLLAFPPGTEGSPYKDLYACERWNQLSRKFVQTFADVHGLSDGSSLLYTLSTGLSVLKTHSCRNFGAPAELPITAD 324          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_XENLA (Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 62/234 (26.50%), Postives = 111/234 (47.44%), Query Frame = 2
Query:  113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDI-----EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772
            LTQ  + +K   Q L    +    ++    +A++K   + IS+V       +DS+    +  V H     ++   + L ++  + I     E F E  ++++AL+ + + PAL W   N+  L    S  EF+L    FI L+ G   N   A+ YA+ +  P+   H K++Q +M +L + +   E + Y  L +  QW  + D F ++ C L G+++E  L++   AG  AL
Sbjct:   61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQTDSQRILSEVMVEHFFRQGMLDVAEELCQEASLSIDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAKNF-QPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACSLLGLSVESPLSVSFSAGCVAL 293          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_MOUSE (Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 62/234 (26.50%), Postives = 111/234 (47.44%), Query Frame = 2
Query:  113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDI-----EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772
            LTQ  + +K   Q L    +    ++    +A++K   S IS+V       +DS+    +  V H     ++   + L ++  + +     E F E  ++++AL+ + + PAL W   N+  L    S  EF+L    FI L+ G   N   A+ YA+ +  P+   H K++Q +M +L + +   E + Y  L +  QW  + D F ++ C L G+++E  L++   AG  AL
Sbjct:   61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNF-QPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL 293          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_HUMAN (Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 62/234 (26.50%), Postives = 111/234 (47.44%), Query Frame = 2
Query:  113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDI-----EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772
            LTQ  + +K   Q L    +    ++    +A++K   S IS+V       +DS+    +  V H     ++   + L ++  + +     E F E  ++++AL+ + + PAL W   N+  L    S  EF+L    FI L+ G   N   A+ YA+ +  P+   H K++Q +M +L + +   E + Y  L +  QW  + D F ++ C L G+++E  L++   AG  AL
Sbjct:   61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNF-QPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL 293          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5B_MOUSE (Protein RMD5 homolog B OS=Mus musculus GN=Rmnd5b PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 59/233 (25.32%), Postives = 113/233 (48.50%), Query Frame = 2
Query:  110 KLTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVADVS--DSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDIEV-----FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772
            K+    + L  +H+ +        K I    R  + EI  V+S+    S    +   +   V HL    ++S  + L ++  +++++     F E  ++++AL  +++ PAL W   ++ RL +  S  EF+L    FI L+ G  E  L A++YAR +  P+   H +E+Q +M +L + +   E + Y  L +   W  + + F ++ C L G+++E  L++   +G  AL
Sbjct:   67 KIRDTVQKLASDHKDIHSSVSRVGKAI---DRNFDSEICGVVSDAVWDSREKQQQILQMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPEKQLEALSYAR-HFQPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDNSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVAL 295          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_XENTR (Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 62/234 (26.50%), Postives = 110/234 (47.01%), Query Frame = 2
Query:  113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRK-----DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772
            LTQ  + +K   Q L    +    ++    +A++K   + IS+V       +DS+    +  V H     ++   + L ++     D    E F E  ++++AL+ + + PAL W   N+  L    S  EF+L    FI L+ G   N   A+ YA+ +  P+   H K++Q +M +L + +   E + Y  L +  QW  + D F ++ C L G+++E  L++   AG  AL
Sbjct:   61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQNDSQQILSEVMVEHFFRQGMLDVAEELCQEAGLSIDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNF-QPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL 293          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5B_HUMAN (Protein RMD5 homolog B OS=Homo sapiens GN=RMND5B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 60/233 (25.75%), Postives = 114/233 (48.93%), Query Frame = 2
Query:  110 KLTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISN-VADVSDSENFSKDDA-VNHL--TSLVSRLQGLKRKDLVDIEV-----FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772
            K+    + L  +H+ +        K I    R  + EI  V+S+ V D  + +      A V HL    ++S  + L ++  +++++     F E  ++++AL  +++ PAL W   ++ RL +  S  EF+L    FI L+ G     L A++YAR +  P+   H +E+Q +M +L + +   E + Y  L +   W  + + F ++ C L G+++E  L++   +G  AL
Sbjct:   67 KIKDTVQKLASDHKDIHSSVSRVGKAI---DRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYAR-HFQPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVAL 295          
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: FYV10_PICST (Protein FYV10 OS=Pichia stipitis GN=FYV10 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.314e-12
Identity = 51/191 (26.70%), Postives = 89/191 (46.60%), Query Frame = 2
Query:  329 KRKDLVDIEVFQEAKKV-IDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWG----------ATHMKELQRVMAT-------------------LAFKSNTECTT-----YKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYED 796
            K   L+D ++F+   KV +  +++ ++   +AW ++N++ LKK+ S  EF++    F+ L+   +   AI ++   L+P+G          A H   L R+                      +AF SN    +     Y+ L   ++WD L   F + F KLYG++    + IYL AGL++L T  CY +
Sbjct:  192 KYMKLIDYDLFESFNKVYVSIMEDHDLTLVIAWFNENRNFLKKANSNLEFEINYCRFLSLIEKGDVNEAIKFSSINLSPYGNVSNYQDTDRANHEHNLNRLKEIGGLLVYMAINEEKRTRNDKIAFSSNLLINSPRFHEYEKLLSDERWDSLSMCFVENFTKLYGISKNYPIFIYLSAGLASLKTKSCYHN 382          
The following BLAST results are available for this feature:
BLAST of FC878540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
FYV10_PHANO6.953e-2234.83Protein FYV10 OS=Phaeosphaeria nodorum GN=FYV10 PE... [more]
FYV10_YARLI2.642e-2129.88Protein FYV10 OS=Yarrowia lipolytica GN=FYV10 PE=3... [more]
RMD5A_XENLA6.303e-1526.50Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a... [more]
RMD5A_MOUSE6.303e-1526.50Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a P... [more]
RMD5A_HUMAN6.303e-1526.50Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A P... [more]
RMD5B_MOUSE1.075e-1425.32Protein RMD5 homolog B OS=Mus musculus GN=Rmnd5b P... [more]
RMD5A_XENTR1.075e-1426.50Protein RMD5 homolog A OS=Xenopus tropicalis GN=rm... [more]
RMD5B_HUMAN2.395e-1425.75Protein RMD5 homolog B OS=Homo sapiens GN=RMND5B P... [more]
FYV10_PICST1.314e-1226.70Protein FYV10 OS=Pichia stipitis GN=FYV10 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CD07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878540 ID=FC878540; Name=FC878540; organism=Citrus clementina; type=EST; length=881bp
AATTTTACTCGCAATGGAAATGGATTCGCTCCCAAACGGAAACTCAGCCG
CCGCCTCTCCACCGCAGAACCCCACCCCAGCCGCCGCAGGTGGCATGACG
CCGTTTCCGAAACTGACTCAATTAACCGAAGCTCTAAAACTCGAGCACCA
ATTTCTAAGAGTTCCCTTCGAGCACTACAAGAAGACTATACGAACCGACC
ACCGTGCCGTCGAGAAAGAAATTACGTCCGTTATTTCCAACGTCGCTGAC
GTTTCCGATTCCGAAAACTTCTCCAAAGACGACGCCGTAAATCACCTCAC
CTCTCTCGTTTCAAGACTCCAAGGGCTCAAACGCAAGGATCTTGTTGATA
TTGAGGTATTCCAAGAAGCAAAAAAGGTTATTGATGCTCTTCAAAATAAG
GAGGTAGCCCCTGCTTTAGCCTGGTGTTCTGATAATAAATCAAGGTTGAA
GAAGTCTAAGAGCAAATTTGAATTTCAGTTGAGACTGCAAGAGTTCATAG
AGTTAGTAAGAGGCGAAAACAACTTGCGTGCCATTACATATGCTCGAAAG
TACCTTGCACCATGGGGAGCTACCCATATGAAAGAATTGCAGCGGGTTAT
GGCAACCTTGGCTTTTAAGAGTAATACTGAGTGCACCACATACAAGGCTT
TGTTTGAACCAAAGCAATGGGATTTCTTGGTCGACCAATTTAAACAGGAA
TTCTGCAAGTTATATGGCATGACACTAGAGCCATTATTAAATATTTATCT
GCAAGCTGGCTTATCTGCCCTAAACACTCCATACTGTTATGAAGATGATT
GTACCAAGGAGGACCCCCTGTCACAGGAGAGCTTCCGAAAGCTAGCATCA
CCATTGCCATACTCNTAGCAGCATCACTCGG
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