FC878540
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: FYV10_PHANO (Protein FYV10 OS=Phaeosphaeria nodorum GN=FYV10 PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22 Identity = 70/201 (34.83%), Postives = 103/201 (51.24%), Query Frame = 2 Query: 320 QGLKRKDLVDIEVFQEAKKVIDAL-QNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR--GENNL-RAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCY----------EDDCTKEDPLSQESFRKLASPLPYS*QHHS 880 Q + +DLVD++ F K+ +L + + AL WC ++ LKK S EF+LRLQ++IELVR GE L A +A+KYL+ G + L++ LA+K + Y +L+ P +W L + F LY + PLL+I L AGLSAL TP C+ T P+ +LA +PY+ HH+ Sbjct: 150 QSKEIEDLVDVDAFIACHKIERSLREGMSTSLALDWCKEHSKELKKGGSMLEFELRLQQYIELVRQGGETKLVEARVHAKKYLSTSGDFEL--LRKAAGLLAYKPWDDVEPYVSLYSPSRWAHLANLFLSTHHNLYSLPPRPLLHIALSAGLSALKTPACHSAYTSSSANASSATTSVCPICSTELNELARNVPYA--HHT 346
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: FYV10_YARLI (Protein FYV10 OS=Yarrowia lipolytica GN=FYV10 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21 Identity = 72/241 (29.88%), Postives = 120/241 (49.79%), Query Frame = 2 Query: 116 TQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEI--TSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKDLVDIEVFQEAKKVIDAL-QNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLSQE 829 T T ++EH L V F++ K+T + EK+ T + + D + FS+ + S Q LVD+ + + V +L Q A LAWCS+N+S L+K++S EF++RLQ ++ELV+ A+ Y +++L+ H++E+Q+ LAF TE + YK L+ ++W+ L +F Q F ++G++ L L GLS L T C E P++ + Sbjct: 94 TLTTTKARVEH--LNVIFDNEKETDPEKQKETEKKWLRTRLERLLTDYFLRQGFSE--------TAKSFAQNRGITSLVDVTILDQCISVETSLRQRHSTAECLAWCSENRSFLRKTRSSLEFEVRLQHYVELVKSGRVEDALKYCQRFLSKNADIHLREIQQAAGLLAFPPGTEGSPYKDLYACERWNQLSRKFVQTFADVHGLSDGSSLLYTLSTGLSVLKTHSCRNFGAPAELPITAD 324
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_XENLA (Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15 Identity = 62/234 (26.50%), Postives = 111/234 (47.44%), Query Frame = 2 Query: 113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDI-----EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772 LTQ + +K Q L + ++ +A++K + IS+V +DS+ + V H ++ + L ++ + I E F E ++++AL+ + + PAL W N+ L S EF+L FI L+ G N A+ YA+ + P+ H K++Q +M +L + + E + Y L + QW + D F ++ C L G+++E L++ AG AL Sbjct: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQTDSQRILSEVMVEHFFRQGMLDVAEELCQEASLSIDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAKNF-QPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACSLLGLSVESPLSVSFSAGCVAL 293
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_MOUSE (Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15 Identity = 62/234 (26.50%), Postives = 111/234 (47.44%), Query Frame = 2 Query: 113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDI-----EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772 LTQ + +K Q L + ++ +A++K S IS+V +DS+ + V H ++ + L ++ + + E F E ++++AL+ + + PAL W N+ L S EF+L FI L+ G N A+ YA+ + P+ H K++Q +M +L + + E + Y L + QW + D F ++ C L G+++E L++ AG AL Sbjct: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNF-QPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL 293
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_HUMAN (Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15 Identity = 62/234 (26.50%), Postives = 111/234 (47.44%), Query Frame = 2 Query: 113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDI-----EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772 LTQ + +K Q L + ++ +A++K S IS+V +DS+ + V H ++ + L ++ + + E F E ++++AL+ + + PAL W N+ L S EF+L FI L+ G N A+ YA+ + P+ H K++Q +M +L + + E + Y L + QW + D F ++ C L G+++E L++ AG AL Sbjct: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNF-QPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL 293
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5B_MOUSE (Protein RMD5 homolog B OS=Mus musculus GN=Rmnd5b PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 59/233 (25.32%), Postives = 113/233 (48.50%), Query Frame = 2 Query: 110 KLTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVADVS--DSENFSKDDAVNHL--TSLVSRLQGLKRKDLVDIEV-----FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772 K+ + L +H+ + K I R + EI V+S+ S + + V HL ++S + L ++ +++++ F E ++++AL +++ PAL W ++ RL + S EF+L FI L+ G E L A++YAR + P+ H +E+Q +M +L + + E + Y L + W + + F ++ C L G+++E L++ +G AL Sbjct: 67 KIRDTVQKLASDHKDIHSSVSRVGKAI---DRNFDSEICGVVSDAVWDSREKQQQILQMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPEKQLEALSYAR-HFQPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDNSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVAL 295
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5A_XENTR (Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14 Identity = 62/234 (26.50%), Postives = 110/234 (47.01%), Query Frame = 2 Query: 113 LTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISNVAD----VSDSENFSKDDAVNHL--TSLVSRLQGLKRK-----DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772 LTQ + +K Q L + ++ +A++K + IS+V +DS+ + V H ++ + L ++ D E F E ++++AL+ + + PAL W N+ L S EF+L FI L+ G N A+ YA+ + P+ H K++Q +M +L + + E + Y L + QW + D F ++ C L G+++E L++ AG AL Sbjct: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQNDSQQILSEVMVEHFFRQGMLDVAEELCQEAGLSIDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNF-QPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL 293
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: RMD5B_HUMAN (Protein RMD5 homolog B OS=Homo sapiens GN=RMND5B PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14 Identity = 60/233 (25.75%), Postives = 114/233 (48.93%), Query Frame = 2 Query: 110 KLTQLTEALKLEHQFLRVPFEHYKKTIRTDHRAVEKEITSVISN-VADVSDSENFSKDDA-VNHL--TSLVSRLQGLKRKDLVDIEV-----FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG--ENNLRAITYARKYLAPWGATHMKELQRVMATLAF-KSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 772 K+ + L +H+ + K I R + EI V+S+ V D + + A V HL ++S + L ++ +++++ F E ++++AL +++ PAL W ++ RL + S EF+L FI L+ G L A++YAR + P+ H +E+Q +M +L + + E + Y L + W + + F ++ C L G+++E L++ +G AL Sbjct: 67 KIKDTVQKLASDHKDIHSSVSRVGKAI---DRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYAR-HFQPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVAL 295
BLAST of FC878540 vs. ExPASy Swiss-Prot
Match: FYV10_PICST (Protein FYV10 OS=Pichia stipitis GN=FYV10 PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.314e-12 Identity = 51/191 (26.70%), Postives = 89/191 (46.60%), Query Frame = 2 Query: 329 KRKDLVDIEVFQEAKKV-IDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWG----------ATHMKELQRVMAT-------------------LAFKSNTECTT-----YKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYED 796 K L+D ++F+ KV + +++ ++ +AW ++N++ LKK+ S EF++ F+ L+ + AI ++ L+P+G A H L R+ +AF SN + Y+ L ++WD L F + F KLYG++ + IYL AGL++L T CY + Sbjct: 192 KYMKLIDYDLFESFNKVYVSIMEDHDLTLVIAWFNENRNFLKKANSNLEFEINYCRFLSLIEKGDVNEAIKFSSINLSPYGNVSNYQDTDRANHEHNLNRLKEIGGLLVYMAINEEKRTRNDKIAFSSNLLINSPRFHEYEKLLSDERWDSLSMCFVENFTKLYGISKNYPIFIYLSAGLASLKTKSCYHN 382 The following BLAST results are available for this feature:
BLAST of FC878540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878540 ID=FC878540; Name=FC878540; organism=Citrus clementina; type=EST; length=881bpback to top |