FC878553

Overview
NameFC878553
Unique NameFC878553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GLIP3_ARATH (GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=GLIP3 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 72/236 (30.51%), Postives = 115/236 (48.73%), Query Frame = 1
Query:  145 FVFGDSLVDNGNNNYLATTA--RADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPELTGSRLLVGANFASAGIGILNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNGALILITVGGNDFVNNYYLVPYSARSRQF---SLPDYVKYVISEYRKLLTRLHDLGARRVLVTGTGPLGCVPAERAM-RGRNGQCAADLXRAADLYNPQLVQLVKDL 834
            FVFGDSL D GNNNY+ T +  R++  PYG     + PTGR S+G   P+     + S P  P L P    ++   G +FASAG G L ++ +  V  I +  Q   F++ +  + + +G   TK++ + A+ L  +G ND     Y  P+SA S  F   S   +V +VI     ++  ++ +G R+      GP  C P      R + G C   +    D++N +   +++ L
Sbjct:   37 FVFGDSLFDAGNNNYINTVSSFRSNIWPYG-QTNFKFPTGRLSDG---PE--KAWLPSIP--PNLQPNNGNNQFTYGVSFASAGAGALAESFLGMV--INLGTQLNNFKDVEKSLRSELGDAETKRVFSRAVYLFHIGAND-----YFYPFSANSSTFKSNSKEKFVDFVIGNITFVIEEVYKMGGRKFGFLNVGPYECSPNSLIRDRTKIGSCFKPVAELIDMHNKKFPDVLRRL 257          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GDL63_ARATH (GDSL esterase/lipase At4g16220 OS=Arabidopsis thaliana GN=At4g16220 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  145 FVFGDSLVDNGNNNYLATTARADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIGS-EPTLPYLSPELTGSRLLVGANFASAGIGILNDTG 414
            FVFGDSLV+ GNNNYLAT A+A++ P GID+ +  PTGRF+NG  I D I Q +GS E T PYL+P   G  +L GAN+A  G G LN  G
Sbjct:   32 FVFGDSLVEVGNNNYLATLAKANNFPNGIDFGS--PTGRFTNGRTIVDIIYQALGSDELTPPYLAPTTRGPLILNGANYAPGGSGPLNSPG 120          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GDL21_ARATH (GDSL esterase/lipase At1g54030 OS=Arabidopsis thaliana GN=At1g54030 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.396e-16
Identity = 67/233 (28.76%), Postives = 117/233 (50.21%), Query Frame = 1
Query:  145 FVFGDSLVDNGNNNYLATT-ARADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPEL-TGSRLLVGANFASAGIGILNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNGALILITVGGNDFVNNYYLVPYSARSRQFSLPDYVKYVISEYRKLLTRLHDLGARRVLVTGTGPLGCVPAERAMRGRNGQCAADLXRAADLYNPQLVQLVKDLN 837
            FVFGD L D GN  +L+     A  PPYG+     + TGR+S+G  +PD++++ +G    +P +SP L T +    GANFA A   +L          + + +Q + F E +N+ T         Q  + A+ LI +G +D+++     P  + +++ +   +V  VI+  +  +  ++  G R+       PLGC+PA +   G   +C       A L+N +L+QL+ +L+
Sbjct:   54 FVFGDGLYDAGNKQFLSQNRVDASFPPYGVT--VGQATGRWSDGSIVPDYLAKFMG----IPKISPILLTTADFSHGANFAIADATVLGSPP----ETMTLSQQVKKFSENKNKWT--------NQTRSEAIYLIYIGSDDYLSYAKSNPSPSDTQKQA---FVDQVITTIKAEIKVVYGSGGRKFAFQNLAPLGCLPAVKQASGNVQECVKLPSEMAALHNKKLLQLLVELS 265          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GDL2_ARATH (GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.633e-15
Identity = 76/241 (31.54%), Postives = 110/241 (45.64%), Query Frame = 1
Query:  145 FVFGDSLVDNGNNNYLATTARADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPELTGSRLLVGANFASAGIGILNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQL----VNGALILITVGGNDFVNNYYLVPYSARSRQFSLPDYVKY---VISEYRKLLTRLHDLGARRVLVTGTGPLGCVPAERAMRGRNG----QCAADLXRAADLYNPQLVQLVKDL 834
            F FGDS  D G    +A    +   P G  +  +R TGR S+G  + DF+ Q + +    PYL   L GS+   GANFA  G   L       +NI  M  QF +F+     + ++  P +   +       AL +I +G ND  +++        S+  S    VK    VISE +  +  L+D G R+  V  TGPLGC+P + +M    G     C A    AA L+N  L  + +DL
Sbjct:   39 FNFGDSNSDTGG--LVAGLGYSIGLPNGRSF-FQRSTGRLSDGRLVIDFLCQSLNTSLLNPYLD-SLVGSKFQNGANFAIVGSSTLPRYVPFALNIQLM--QFLHFKSRALELASISDPLKEMMIGESGFRNALYMIDIGQNDIADSF--------SKGLSYSRVVKLIPNVISEIKSAIKILYDEGGRKFWVHNTGPLGCLPQKLSMVHSKGFDKHGCLATYNAAAKLFNEGLDHMCRDL 265          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: LIP4_ARATH (GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana GN=LIP4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 79/275 (28.73%), Postives = 116/275 (42.18%), Query Frame = 1
Query:   55 SFVFGVRTILGLVMXXXXXXXXXXXXXXXFFVFGDSLVDNGNNNYLATTARADSPPYGIDYPT-----RRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPELTGSRLLVGANFASAGIGILNDTGIQFVNIIRMFRQFEYFQ----EYQNRVTALIGPQRTKQLVNGALILITVGGNDFVNNYYLVPYSARSRQFSLP-DYVKYVISEYRKLLTRLHDLGARRVLVTGTGPLGCVPAERAM-----RGRNGQCAADLXRAADLYNPQLVQLVKDL 834
            SF F     L L++                F FGDS  D G               Y I +P      RR TGR S+G  + DF+ Q + +    PYL   L  +R   GANFA AG   L       +NI    +QF +F+    E  +   +L G   +      AL +I +G ND   ++      AR   +S     +  +I+E +  + RL+D G RR  +  TGPLGC+P + +M       ++G C      AA L+N  L  + ++L
Sbjct:   12 SFFFITLVSLALLILRQPSRAASCTARPVIFNFGDSNSDTGG--------LVAGLGYPIGFPNGRLFFRRSTGRLSDGRLLIDFLCQSLNTSLLRPYLD-SLGRTRFQNGANFAIAGSPTLPKNVPFSLNI--QVKQFSHFKSRSLELASSSNSLKGMFISNNGFKNALYMIDIGQNDIARSF------ARGNSYSQTVKLIPQIITEIKSSIKRLYDEGGRRFWIHNTGPLGCLPQKLSMVKSKDLDQHG-CLVSYNSAATLFNQGLDHMCEEL 268          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GDL1_CARPA (GDSL esterase/lipase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 68/234 (29.06%), Postives = 110/234 (47.01%), Query Frame = 1
Query:  145 FVFGDSLVDNGNNNYLATTARADSPPYG--IDYPTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPELTGS-RLLVGANFASAGIGILNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNGALILITVGGNDFVNNYYLVPYSARSRQFSLPDYVKYVISEYRKLLTRLHDLGARRVLVTGTGPLGCVPAERAMRGRNGQCAADLXRAADLYNPQLVQLVKDLN 837
            F+FGDSL DNGN  +LAT   +   PYG  ID+    P GR+S+G  +PDFI++ +G    +P+  P L  S     G  FA+A   IL          + +  Q + F + ++  T     QR K      + +  +G ND++ NY     +A ++Q     +V  VI++ +  L  ++ LG R+       PLGC+P  +        C       A  +N  L + +++L+
Sbjct:   30 FIFGDSLYDNGNKPFLATDVPSTFWPYGLSIDF----PNGRWSDGRIVPDFIAEFLG----IPFPPPVLDRSANFSSGVTFATADATILGTP----PQTLTLGDQVKAFAQIKSTWT---DAQRQK-----GIYMFYIGANDYL-NYTNANLNATAQQQEA--FVSQVIAKLKDQLLAIYGLGGRKFAFQNLAPLGCLPIVKQDFKTGNFCLPLASNLAAQHNQLLSETLENLS 240          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GDL9_ARATH (GDSL esterase/lipase At1g28600 OS=Arabidopsis thaliana GN=At1g28600 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.170e-13
Identity = 67/207 (32.37%), Postives = 95/207 (45.89%), Query Frame = 1
Query:  151 FGDSLVDNGN------NNYLATTARADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPELTGSR---LLVGANFASAGI-----GILNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNGALILI-TVGGNDFVNNYYLVPYSARSRQFSLPDYVKYVISEYRKLLTRLHDLGARRVLVTGTGPLGC 726
            FGDS+ D GN       N L  TA    PPYG  +    PTGR  +G  I DFI++ +G    LPY+ P   GS+      G NFA AG        L   GIQ    + +  Q + F++    +     P   + ++  ALIL+  +GGND     Y  P+  R     + + V +VI+     +T L  +G +  LV G  P+GC
Sbjct:   35 FGDSIADTGNLVGLSDRNQLPVTA---FPPYGETF-FHHPTGRSCDGRIIMDFIAEFVG----LPYVPPYF-GSKNRNFDKGVNFAVAGATALKSSFLKKRGIQPHTNVSLGVQLKSFKKSLPNLCG--SPSDCRDMIGNALILMGEIGGND-----YNFPFFNRKPVKEVEELVPFVIASISSTITELIGMGGKTFLVPGEFPIGC 225          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GDL16_ARATH (GDSL esterase/lipase At1g31550 OS=Arabidopsis thaliana GN=At1g31550 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 66/206 (32.04%), Postives = 92/206 (44.66%), Query Frame = 1
Query:  151 FGDSLVDNGN------NNYLATTARADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPEL--TGSRLLVGANFASAGI-----GILNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNGALILI-TVGGNDFVNNYYLVPYSARSRQFSLPDYVKYVISEYRKLLTRLHDLGARRVLVTGTGPLGC 726
            FGDS+ D GN      +N L  +A    PPYG  +    PTGRFS+G  I DFI++ +G    LPY+ P    T      G NFA A         L + G    +   +  Q + F++    +  L  P   + ++  ALIL+  +G ND     Y  P+        + + V  VIS     +T L  +G R  LV G  PLGC
Sbjct:   40 FGDSIADTGNLLGLSDHNNLPMSA---FPPYGETF-FHHPTGRFSDGRLIIDFIAEFLG----LPYVPPYFGSTNGNFEKGVNFAVASATALESSFLEEKGYHCPHNFSLGVQLKIFKQSLPNLCGL--PSDCRDMIGNALILMGEIGAND-----YNFPFFQLRPLDEVKELVPLVISTISSAITELIGMGGRTFLVPGGFPLGC 230          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: GDL51_ARATH (GDSL esterase/lipase At3g14220 OS=Arabidopsis thaliana GN=At3g14220 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 70/231 (30.30%), Postives = 106/231 (45.89%), Query Frame = 1
Query:  145 FVFGDSLVDNGNNNYLATTAR-ADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIG-SEPTLPYLSPELTGSRLLVGANFASAGIGILNDTGIQFVNIIRMF-RQFEYFQEYQNRVTALIGPQRTKQLVNGALILITVGGNDFVNNYYLVPYSARSRQFSLPDYVKYVISEYRKLLTRLHDL-GARRVLVTGTGPLGCVPAERAMRGRNGQCAADLXRAADLYNPQLVQLV 825
            F FGDS  D GN  + ++    A + PYG       P+GR+S+G  +PDF+ + IG  EP  P L P+   SR   GA+FA AG  +L   G Q       F +Q   F E   + T     +R +     A+ ++ +G  D++N     P +    Q +    V +V+    + LT L+   GAR+  V   GPLGC+P  R        C   +      +N +L +L+
Sbjct:   34 FTFGDSSYDVGNTKFFSSEFDPATTWPYGDSIDD--PSGRWSDGHIVPDFVGRLIGHREPIPPVLDPKADLSR---GASFAIAGAVVL---GSQSTTASMNFGQQISKFLELHKQWT---DKERAE-----AIYMVNIGAEDYLNFAKAHPNANTVEQLT---QVAHVLQRIPRELTSLYRAGGARKFAVQNLGPLGCLPIVRQEFKTGENCMEMVNFMVKTHNERLSRLL 245          
BLAST of FC878553 vs. ExPASy Swiss-Prot
Match: FUCO3_ARATH (Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FXG1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 70/248 (28.23%), Postives = 103/248 (41.53%), Query Frame = 1
Query:  145 FVFGDSLVDNGNNNYLATTARADSPPYGIDYPTRRPTGRFSNGLNIPDFISQHIGSEPTLPYLSPEL--TGSRLLVGANFASAGIGI------LNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRT----KQLVNGALILITVGGNDFVNNYYLVPYSARSRQFSLPDYVKYVISEYRKLLTRLHDLGARRVLVTGTGPLGCVP------AERAMRGRNGQCAADLXRAADLYNPQLVQLVKDL 834
            F FGDS  D G    L+       PP+G  +    P GR+ +G  + DFI++ +G    LPYLS  L   GS    GANFA+AG  I      L  +G    ++   F QF  F      V +  G  +T        + AL    +G ND    Y+     A      +   V  +IS++   +  ++  G R   +  TGP+GC+         +A    +  C + L   A  +N  L Q V +L
Sbjct:   32 FNFGDSNSDTGG---LSAAFGQAGPPHGSSF-FGSPAGRYCDGRLVIDFIAESLG----LPYLSAFLDSVGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQTVRSRGGVYKTMLPESDSFSKALYTFDIGQNDLTAGYF-----ANKTVEQVETEVPEIISQFMNAIKNIYGQGGRYFWIHNTGPIGCLAYVIERFPNKASDFDSHGCVSPLNHLAQQFNHALKQAVIEL 266          
The following BLAST results are available for this feature:
BLAST of FC878553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLIP3_ARATH1.948e-1830.51GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=... [more]
GDL63_ARATH1.948e-1857.14GDSL esterase/lipase At4g16220 OS=Arabidopsis thal... [more]
GDL21_ARATH1.396e-1628.76GDSL esterase/lipase At1g54030 OS=Arabidopsis thal... [more]
GDL2_ARATH2.633e-1531.54GDSL esterase/lipase At1g09390 OS=Arabidopsis thal... [more]
LIP4_ARATH2.229e-1428.73GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana... [more]
GDL1_CARPA3.802e-1429.06GDSL esterase/lipase OS=Carica papaya PE=1 SV=1[more]
GDL9_ARATH7.170e-1332.37GDSL esterase/lipase At1g28600 OS=Arabidopsis thal... [more]
GDL16_ARATH2.086e-1232.04GDSL esterase/lipase At1g31550 OS=Arabidopsis thal... [more]
GDL51_ARATH2.725e-1230.30GDSL esterase/lipase At3g14220 OS=Arabidopsis thal... [more]
FUCO3_ARATH2.725e-1228.23Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA73AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878553 ID=FC878553; Name=FC878553; organism=Citrus clementina; type=EST; length=838bp
CACAGCAAGCTTAGATTTTCTAGGATTCGCGTTAAATATAATACAATGGC
AAGCTCATTTGTTTTTGGTGTACGGACAATTTTAGGTCTTGTGATGGCAT
TGGGAGCTTTGGCTCCTCAAGCTGCGGAGGCCGCTCGTGCTTTCTTTGTG
TTTGGTGATTCACTTGTTGACAATGGCAACAATAACTACTTGGCCACCAC
TGCTCGGGCTGATTCTCCACCGTACGGCATTGATTATCCGACTCGCCGAC
CCACAGGAAGATTCTCCAATGGCCTAAACATTCCTGATTTCATCAGTCAG
CACATTGGTTCGGAGCCCACATTGCCGTATTTGAGTCCAGAGCTCACTGG
GTCTAGACTACTTGTTGGAGCCAATTTTGCTTCTGCTGGAATTGGAATAC
TCAATGACACAGGAATTCAATTTGTAAACATAATTAGAATGTTCAGGCAA
TTCGAATACTTCCAAGAATATCAGAACCGGGTTACAGCTTTAATCGGACC
GCAGCGGACTAAGCAACTTGTTAATGGAGCACTCATCCTCATCACTGTCG
GTGGCAATGACTTTGTCAATAACTATTACTTGGTTCCCTACTCTGCAAGA
TCTCGTCAGTTTTCTCTACCGGATTACGTCAAATATGTCATCTCCGAGTA
CAGAAAACTTTTAACGAGGCTACACGACCTTGGAGCAAGAAGGGTTTTGG
TTACCGGAACCGGGCCGTTGGGGTGTGTTCCGGCAGAGCGAGCTATGCGG
GGCAGAAATGGACAGTGCGCTGCTGATCTTNCACGAGCTGCCGATTTGTA
TAATCCTCAACTTGTTCAATTGGTTAAAGATCTGAATA
back to top