FC878614

Overview
NameFC878614
Unique NameFC878614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.909e-25
Identity = 81/220 (36.82%), Postives = 121/220 (55.00%), Query Frame = 1
Query:  154 PRNKPITKMGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPN-LVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            P+   IT +GL    LL+AS +   I  AE    +GVCYG LGNNLP+  E ++L  KS    R+++YD N   L+ALK ++I+V + +PN                WV+ NV  + P  KI+Y+ VGNEI  +   S   + L PAM  I K++   G    IKV T   M ++ +S+PPS G+FR+D +   + P++ FL  T++   V+ Y +F +S
Sbjct:   10 PQMAAITLLGL----LLVASSI--EIAGAE---SIGVCYGMLGNNLPNHWEVIQL-YKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHAR-WWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFVDPIVGFLRDTRAPLLVNIYPYFSYS 217          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.717e-25
Identity = 65/187 (34.76%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  253 KVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLV-PAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            ++GVCYG +GNNLPS  E + L  +S    R+++YD N   L+AL+N+ I++ + VPN               QWV+ NVL + P  KI+Y+ VGNE+  +   S +   V PA++ + ++++  G   +IKV T   M ++ +S+PPS G+FR D+  S + P++ +L    +   V+ Y +F +S
Sbjct:    1 QIGVCYGMMGNNLPSANEVINLY-RSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTAR-QWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFRGDV-RSYLDPIIGYLLYASAPLHVNVYPYFSYS 184          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.316e-24
Identity = 80/220 (36.36%), Postives = 120/220 (54.55%), Query Frame = 1
Query:  154 PRNKPITKMGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPN-LVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            P+   IT +GL    LL+AS +   I  A+    +GVCYG LGNNLP+  E ++L  KS    R+++YD N   L+ALK ++I+V + +PN                WV+ NV  + P  KI+Y+ VGNEI  +   S   + L PAM  I K++   G    IKV T   M ++ +S+PPS G+FR+D +     P++ FL  T++   V+ Y +F +S
Sbjct:   10 PQMAAITLLGL----LLVASTI--EIAGAQ---SIGVCYGMLGNNLPNHWEVIQL-YKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHAR-WWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFTDPIVGFLRDTRAPLLVNIYPYFSYS 217          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.719e-24
Identity = 82/220 (37.27%), Postives = 120/220 (54.55%), Query Frame = 1
Query:  154 PRNKPITKMGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPN-LVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            P+   IT +GL    LL+AS    SI  A   S +GVCYG LGNNLP+  E ++L  KS    R+++YD N   L+ALK ++I+V + +PN                WV+ NV  + P  KI+Y+ VGNEI  +   S   + L PAM  I K++   G    IKV T   M ++ +S+PPS G+FR+D +     P++ FL  T++   V+ Y +F +S
Sbjct:   11 PQMAAITLLGL----LLVAS----SIDIAGAQS-IGVCYGMLGNNLPNHWEVIQL-YKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHAR-WWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFTDPIVGFLRDTRAPLLVNIYPYFSYS 218          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 73/212 (34.43%), Postives = 122/212 (57.55%), Query Frame = 1
Query:  178 MGLVVAHLLLASVMFFSIGSAEMS-SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            + L+   LLL  ++  S+ + + + + +GVC G +G++LP PQ  V  + K+    R+++YD NP  L+AL+ ++I++ + VPNE             + WV+ NV  Y    K +Y+ VGNE+   P  S    LVPAMR I++++   G A+KIKV T     VL  +FPPS G+F+S+ + +++ P++ FL   +S   V+ Y +F +S
Sbjct:   13 LSLISIVLLLGQLVVGSLATKQHTGAPIGVCNGMVGDDLP-PQAEVVALYKTNNIPRMRLYDPNPAALEALRGSNIKLLLGVPNE-NLQYIALSQANANAWVQNNVRNY-ANVKFKYIAVGNEV--KPSDSFAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKSEYN-ALLYPIIRFLVSHQSPLLVNLYPYFAYS 218          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.002e-24
Identity = 67/201 (33.33%), Postives = 110/201 (54.73%), Query Frame = 1
Query:  214 VMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIW--PNLVPAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            + FF+       ++VGVCYG  GNNLP   E + L  KS   TR++IYD N  +L+AL+ ++I++ + VPN                WV+ NV  +      RY+ VGNEI  +   + W    ++PAMR I  ++++ G + +IKV T   + ++ +S+PPS G FR D+  S + P++ FL+  +S    + Y +F ++
Sbjct:   24 LFFFAASVGITDAQVGVCYGMQGNNLPPVSEVIALYKKS-NITRMRIYDPNRAVLEALRGSNIELILGVPNS--DLQSLTNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDV-RSYLDPIIGFLSSIRSPLLANIYPYFTYA 220          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.532e-24
Identity = 81/220 (36.82%), Postives = 120/220 (54.55%), Query Frame = 1
Query:  154 PRNKPITKMGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPN-LVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            P+   IT +GL    LL+AS    SI  A   S +GVCYG LGNNLP+  E ++L  KS    R+++YD N   L+ALK ++I+V + +PN                WV+ NV  + P  KI+Y+ VGNEI  +   S   + L PAM  I K++   G    IKV T   M ++ +S+PPS G+FR+D +   +  ++ FL  T++   V+ Y +F +S
Sbjct:   10 PQMAAITLLGL----LLVAS----SIDIAGAQS-IGVCYGMLGNNLPNHWEVIQL-YKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHAR-WWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFVDAIVGFLRDTRAPLLVNIYPYFSYS 217          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 68/188 (36.17%), Postives = 106/188 (56.38%), Query Frame = 1
Query:  250 SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKS-IWPNLVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            +++GVCYG +GNNLPS  E ++L  KS    R+++YD N   L AL+ ++I+V + +PN                WV+ NV  + P  KI+Y+ VGNEI  +   S + P  VPA+  I K++   G    IKV T   M ++ +S+PPS G+FR+D+      P++ FL  T++   V+ Y +F +S
Sbjct:   25 AQIGVCYGMMGNNLPSHSEVIQL-YKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPN-VDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYS 209          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.483e-23
Identity = 70/203 (34.48%), Postives = 110/203 (54.19%), Query Frame = 1
Query:  208 ASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEIL-SLPDKSIWPNLVPAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWSS 810
            A ++  SI +   ++ +GV  G    N+P P + V L+ KS + T V++YDAN  +LKA  NT I+V + V NE               WV  NV  Y+P T I  + VG+E+L ++P   + P L  A+  I K+L       K+KV +P +MD++   FPPS  TF    + +V + +L FL  T SFF ++AY ++ +++
Sbjct:   10 ALLLLLSILACSNAAFIGVNIGTDLTNMPPPSDIVTLL-KSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAA-AWVNKNVAAYIPSTNITAIAVGSEVLTTIP--HVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQ-LLQFLKNTGSFFMLNAYPYYGYTT 207          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.223e-23
Identity = 61/185 (32.97%), Postives = 105/185 (56.76%), Query Frame = 1
Query:  250 SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKS-IWPNLVPAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFF 798
            +++G+CYG +GNNLP P   V  + K+    R+++YD N   L AL+++ I++ + +PN               QWV+ NVL + P  KI+Y+ VGNE+  +   S +   ++PA + + ++++  G   +IKV T   M ++ +SFPPS G+FRSD+  S + P + +L    +   V+ Y +F
Sbjct:   32 AQIGICYGMMGNNLP-PANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSAR-QWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDV-RSYLDPFIGYLVYAGAPLLVNVYPYF 213          
The following BLAST results are available for this feature:
BLAST of FC878614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
E13B_NICPL5.909e-2536.82Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_PHAVU7.717e-2534.76Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13F_TOBAC1.316e-2436.36Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC1.719e-2437.27Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_PRUPE2.933e-2434.43Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_HEVBR5.002e-2433.33Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13E_TOBAC8.532e-2436.82Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_SOLLC1.455e-2336.17Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E134_ARATH2.483e-2334.48Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E13B_PEA7.223e-2332.97Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF16RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878614 ID=FC878614; Name=FC878614; organism=Citrus clementina; type=EST; length=812bp
ATAAAAATTAATTAAACGTCAGTCCACCGTATCAACAAAGTGACGACCCT
CGAGTCTTTGACGCATTATTAAATGCTGTAGCTCTCAACTCTCCCTGGCA
ACAGCGTCACACAGTCTTTTGAACACTACTCCTCCGGTTTTCGTCTCTGC
TTCCCAAGAAACAAGCCCATAACGAAGATGGGTCTTGTTGTTGCTCATCT
GTTGTTGGCCTCCGTTATGTTCTTCTCTATTGGAAGTGCAGAGATGTCAA
GCAAAGTGGGGGTATGCTACGGTCAGCTGGGGAACAACCTTCCATCGCCA
CAGGAGTCGGTGGAACTCATGATCAAATCTCTGAAAGCAACACGGGTCAA
AATCTACGATGCCAATCCGAAGATCCTGAAAGCCCTGAAGAACACAGACA
TCCAAGTGTCCATCATGGTTCCGAATGAAATCATCAACAACATTTCCTTA
AGCAGCCAATCCCTCTCCGACCAGTGGGTCCGAACCAACGTCCTCCCTTA
TCTCCCCGGTACCAAAATCCGATATCTCCTCGTCGGCAACGAGATCCTTA
GCCTCCCCGATAAGTCAATCTGGCCCAACCTCGTACCGGCCATGCGTAAA
ATCAGAAAATCCCTGAAAACCCTCGGTGCCCGCAAGATCAAAGTCGGTAC
CCCCTCCGCTATGGATGTCCTGCAGTCGTCGTTTCCCCCTTCCAACGGCA
CATTTCGGTCCGATATCTCGGAATCGGTCATGCGGCCGATGTTGCATTTC
TTGAACCGGACGAAATCGTTTTTCTTCGTGGATGCTTACACGTTCTTCCC
TTGGTCGTCGGA
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