FC878614

Overview
NameFC878614
Unique NameFC878614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.434e-23
Identity = 67/188 (35.64%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  250 SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNL-VPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            +++GVCYG +GNNLPS  E ++L  KS    R+++YD N   L AL+ ++I+V + +PN                WV+ NV  + P  KI+Y+ VGNEI  +   S   +  VPA+  I K++   G    IKV T   M ++ +S+PPS G+FR+D+      P++ FL  T++   V+ Y +F +S
Sbjct:   25 AQLGVCYGMMGNNLPSHSEVIQL-YKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPN-VDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYS 209          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.102e-22
Identity = 67/186 (36.02%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  256 VGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNL-VPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            +GVCYG +GNNLPS  E ++L  KS    R+++YD N   L AL+ ++I+V + +PN                WV+ NV  + P  KI+Y+ VGNEI  +   S   +  VPA+  I K++   G    IKV T   M ++ +S+PPS G+FR+D+      P++ FL  T++   V+ Y +F +S
Sbjct:    1 LGVCYGMMGNNLPSHSEVIQL-YKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPN-VDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYS 183          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.682e-22
Identity = 65/199 (32.66%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  202 LLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFF 798
            LL+ +M ++  +   + ++GVC+GQ+GNN+P+P E V  M K     R+++Y  NP  L AL+ ++I+  + VPN              + WVR NV  Y    + +Y+ VGNE+   P +     L+ AM+ I ++L   G   IKV T + M   ++++PPS G F+ D   + ++P++ FL   +S   V+ YT+F
Sbjct:   11 LLSLLMAYNFDTT--AGQIGVCFGQMGNNIPNPSE-VVAMFKQYSIPRMRMYGPNPDALNALRGSNIEFILDVPN-GDLKRLADSQAEANTWVRDNVQKY-NDVRFKYISVGNEV--KPGEPGAAALIQAMQNIDRALSAAGLSNIKVSTTTFMGPSRNTYPPSRGRFK-DEYRNFLQPVIGFLVNKRSPLLVNIYTYF 201          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.362e-21
Identity = 61/209 (29.19%), Postives = 109/209 (52.15%), Query Frame = 1
Query:  175 KMGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFF 798
            K  L  A L+L  ++  +I      S +GVCYG++ NNLPS Q+ + L  K+    +++IY  +  I KAL  ++I++ + VPN+             + WV+ N+  + P  K +Y+ +GNE+    +      L+ AM+ +  +L   G + KIKV T +   +L +++PP +  FR ++ +S + P++ FL R       + Y +F
Sbjct:    9 KRSLGAAVLILVGLLMCNIQITGAQSNIGVCYGEIANNLPSEQDVINL-YKANGIRKMRIYYPDTNIFKALNGSNIEIILEVPNQ--DLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVYNALAAAGLQDKIKVSTATYSGLLANTYPPKDSIFREEL-KSFINPIIEFLARNNLPLLANIYPYF 213          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.779e-21
Identity = 67/208 (32.21%), Postives = 113/208 (54.33%), Query Frame = 1
Query:  190 VAHLLLASVMFFSIGSAEMS---SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIW-PNLVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFF 798
            +AHL++  ++   +  A +    ++ GVCYG+ GN LPSP + V L  ++    R++IYD +   L+AL+ ++I++ + VPN              D WV+ NV  Y    K RY+ VGNE+  L + S + P L+ AMR I+ ++   G   +IKV T     +   + PPSNG F+ D+ + +  P+++FL   ++   V+ Y +F
Sbjct:    1 MAHLIVTLLLLSVLTLATLDFTGAQAGVCYGRQGNGLPSPADVVSLCNRN-NIRRMRIYDPDQPTLEALRGSNIELMLGVPN-PDLENVAASQANADTWVQNNVRNY-GNVKFRYIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGLGNQIKVSTAIETGLTTDTSPPSNGRFKDDVRQFI-EPIINFLVTNRAPLLVNLYPYF 204          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.324e-21
Identity = 69/209 (33.01%), Postives = 111/209 (53.11%), Query Frame = 1
Query:  178 MGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            M +++  L++AS  FF+      + ++GVCYG LG+ LPSP + V L  K     R+++Y  +P  L AL+ +DI++ + VP+              D+WV+ NV  Y  G + RY+ VGNE+      S+   L+ AM+ I  ++   G  ++KV T  A D    + PPS G FR D  +S + P++ FL   +S   V+ Y +F +
Sbjct:   12 MLMILLSLVIAS--FFN----HTAGQIGVCYGMLGDTLPSPSDVVAL-YKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSS-DLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEV----KPSVGGFLLQAMQNIENAVSGAGL-EVKVSTAIATDTTTDTSPPSQGRFR-DEYKSFLEPVIGFLASKQSPLLVNLYPYFSY 206          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.176e-21
Identity = 60/209 (28.71%), Postives = 109/209 (52.15%), Query Frame = 1
Query:  175 KMGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFF 798
            K  L  A L+L  ++  +I      S +GVCYG++ NNLPS Q+ + L  K+    +++IY+++  I K+L  ++I++ + VPN+             + WV+ N+  + P  K +Y+ +GNE+    +      L+ AM  +  +L   G + KIKV T +   +L +++PP +  FR +  +S + P++ FL R       + Y +F
Sbjct:    9 KRSLGAAVLILVGLLMCNIQMTGAQSNIGVCYGKIANNLPSEQDVINL-YKANGIRKMRIYNSDTNIFKSLNGSNIEIILDVPNQ--DLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPPKDSIFREEF-KSFINPIIEFLARNNLPLLANIYPYF 213          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.761e-21
Identity = 62/183 (33.88%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  256 VGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            +GVCYG + NNLP   E V+L  +S   T ++IY A+ K L AL+ + I + + V                  WVR NV PY P   I+Y+  GNE+     +    N+VPAMR +  +LK  G   IKV T    D + ++FPPSNG F    +++ M  +   L  T +    + Y +F +
Sbjct:    2 IGVCYGVVANNLPPANEVVQLY-RSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWGGDTQ----NIVPAMRNLGAALKAPGLGTIKVSTSIRFDAVTNTFPPSNGVF----AQAYMTDVARLLASTGAPLLTNVYPYFAY 175          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.761e-21
Identity = 72/207 (34.78%), Postives = 109/207 (52.66%), Query Frame = 1
Query:  190 VAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEIL-SLPDKSIWPNLVPAMRKIRKSLKTLGA-RKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            +A LLL  +  F+  +    S +GV  G    N+PSP + V L+ KS    RV++YDA+  +L A  +T +QV I VPN+             + WV  NV  Y P T I  + VG+E+L SL + +    LV A++ I+ +L T    R+IKV TP +  ++  SFPPS   F +   + V+ P+L FL  T S   ++ Y +F +
Sbjct:    1 MAALLLLFLFLFASSALSQDSLIGVNIGTEVTNMPSPTQVVALL-KSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAAN-WVTRNVAAYYPATNITTIAVGSEVLTSLTNAA--SVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFF-NKTWDPVIVPLLKFLQSTGSPLLLNVYPYFDY 202          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.569e-20
Identity = 62/209 (29.67%), Postives = 109/209 (52.15%), Query Frame = 1
Query:  175 KMGLVVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFF 798
            K G + A L+L  ++  SI      S +GVCYG++ NNLPS Q+ + L  K+    +++IY  +  I KALK ++I++ + VPN+             + WV+ N+  + P  K +Y+ +GNE+  + +      L+ AM  +  +L   G + KIKV T +   +L +++PP    FR + + S + P++ FL +       + Y +F
Sbjct:    6 KNGFLAAALVLVGLLMCSIQMIGAQS-IGVCYGKIANNLPSEQDVINLY-KANGIRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALANSSIA--NGWVQDNIRSHFPYVKFKYISIGNEVSPINNGQYSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPPKASIFRGEFN-SFINPIIQFLAQNNLPLLANVYPYF 209          
The following BLAST results are available for this feature:
BLAST of FC878614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
E132_SOLTU9.434e-2335.64Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E131_SOLTU2.102e-2236.02Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13B_BRACM4.682e-2232.66Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13D_TOBAC1.362e-2129.19Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13H_TOBAC1.779e-2132.21Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13A_ARATH2.324e-2133.01Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13C_TOBAC5.176e-2128.71Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13A_HORVU6.761e-2133.88Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E133_ARATH6.761e-2134.78Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13L_TOBAC2.569e-2029.67Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF16RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878614 ID=FC878614; Name=FC878614; organism=Citrus clementina; type=EST; length=812bp
ATAAAAATTAATTAAACGTCAGTCCACCGTATCAACAAAGTGACGACCCT
CGAGTCTTTGACGCATTATTAAATGCTGTAGCTCTCAACTCTCCCTGGCA
ACAGCGTCACACAGTCTTTTGAACACTACTCCTCCGGTTTTCGTCTCTGC
TTCCCAAGAAACAAGCCCATAACGAAGATGGGTCTTGTTGTTGCTCATCT
GTTGTTGGCCTCCGTTATGTTCTTCTCTATTGGAAGTGCAGAGATGTCAA
GCAAAGTGGGGGTATGCTACGGTCAGCTGGGGAACAACCTTCCATCGCCA
CAGGAGTCGGTGGAACTCATGATCAAATCTCTGAAAGCAACACGGGTCAA
AATCTACGATGCCAATCCGAAGATCCTGAAAGCCCTGAAGAACACAGACA
TCCAAGTGTCCATCATGGTTCCGAATGAAATCATCAACAACATTTCCTTA
AGCAGCCAATCCCTCTCCGACCAGTGGGTCCGAACCAACGTCCTCCCTTA
TCTCCCCGGTACCAAAATCCGATATCTCCTCGTCGGCAACGAGATCCTTA
GCCTCCCCGATAAGTCAATCTGGCCCAACCTCGTACCGGCCATGCGTAAA
ATCAGAAAATCCCTGAAAACCCTCGGTGCCCGCAAGATCAAAGTCGGTAC
CCCCTCCGCTATGGATGTCCTGCAGTCGTCGTTTCCCCCTTCCAACGGCA
CATTTCGGTCCGATATCTCGGAATCGGTCATGCGGCCGATGTTGCATTTC
TTGAACCGGACGAAATCGTTTTTCTTCGTGGATGCTTACACGTTCTTCCC
TTGGTCGTCGGA
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