FC878624

Overview
NameFC878624
Unique NameFC878624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 65/184 (35.33%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  213 SSVETRSLPFVLSFNNLTYSVKAR---RKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            S + +   P  L F ++ Y VK       S  +  +   +  P     +T+           +T+L+ ++G    GE MAVLG SGSGKSTL++A+A R+   +L G I +N   +  + LK  + +V QDDLL+P LTV ETL+F A  RLPR+L++  K    +++I +LGL     TV+G+
Sbjct:   29 SLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEE----------RTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKR-TGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGN 201          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 72/192 (37.50%), Postives = 105/192 (54.69%), Query Frame = 3
Query:  180 PVHQILDVSDTSSVETRSL-PFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            P HQ    S  SSV  +SL P +L F  LTYS+K++                 G+       P  N     + +L  +SG  + GE++A+LG SGSGK+TL+ ALA R+ +  L GT+  NGE   S + K  + +V QDD+L+P LTV ETL + A  RLP+ L++ +K  +V+ ++  LGL     +VIG
Sbjct:   49 PSHQ----SRQSSVLRQSLRPIILKFEELTYSIKSQTGK--------------GSYWFGSQEPKPN-----RLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRL-QGKLSGTVSYNGEPFTSSV-KRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIG 215          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.944e-21
Identity = 54/136 (39.71%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  351 TDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            T  VP  N     +T+LN+ISG  + G+I+A++G SG+GK+TL+D LA +     + G+IK+NG  ++ +    I  +V QDD L P LTV ET++ +A  RLP+ LS   KK RV  ++++L + +    +IG+E
Sbjct:  390 TYSVPSINSDGVEETVLNEISGIVKPGQILAIMGGSGAGKTTLLDILAMKRKTGHVSGSIKVNGISMDRKSFSKIIGFVDQDDFLLPTLTVFETVLNSALLRLPKALSFEAKKARVYKVLEELRIIDIKDRIIGNE 525          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.526e-20
Identity = 69/203 (33.99%), Postives = 105/203 (51.72%), Query Frame = 3
Query:  153 RKEQTGDETPVHQILDVSDTSSVETRSLPFVLSFNNLT---YSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            R E+ G    V  + D+SDT S    + P + S   L    Y +  + + +       +    +G+             SK KT+LN I+G    GE +A+LG SGSGK+TL+ AL  R++K +  G +  NG+   S  +K  + +V QDD+L+P LTV ETL F A  RLP +L++ +K   V  +I +LGL     ++IG
Sbjct:    9 RPEEDGG-VMVQGLPDMSDTQSKSVLAFPTITSQPGLQMSMYPITLKFEEVVYKVKIEQTSQCMGSWK-----------SKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSK-TFSGKVMYNGQPF-SGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIG 197          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 61/175 (34.86%), Postives = 102/175 (58.29%), Query Frame = 3
Query:  258 NLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGEN--------LFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            ++ Y++  R+ ++    +FRR+P P     A  PV  E           +K K +L  ++  A+  EI+A++G SG+GKS+L++ LA R+  ++  G++ +N   ++    K IS YV Q D LFP+LTVEETL+F+A+ RL   L   + + RV++L+ +LGL   A   +GD+
Sbjct:   12 DIDYNIFVRKINVNPFGIFRRKPRP----EADQPVKTEEESLKLEDETGNKVKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQT--GSVYVNKRPVDRANFKKISGYVTQKDTLFPLLTVEETLLFSAKLRL--KLPADELRSRVKSLVHELGLEAVATARVGDD 178          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 67/197 (34.01%), Postives = 102/197 (51.78%), Query Frame = 3
Query:  174 ETPVHQILDVSDT--SSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRI--AKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            ETP+ +  D      S  +  + P  L F NL Y+VK +                           G+N  ++ +T+L  ++G  + GEI+A+LG SGSGK++L+ AL  R+   K  L G I  N + L S+ +K  + +V QDD L+P LTV ETL+F A  RLP +  K +K  + +A++ +LGL     T+IG
Sbjct:   11 ETPIAKTNDDRSLPFSIFKKANNPVTLKFENLVYTVKLKDSQGCF---------------------GKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPL-SKAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIG 185          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.439e-20
Identity = 50/137 (36.50%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  342 VTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            +T  D      +  K   +L  +SG    GE++AV G SGSGK+TL+D LANR     + G + +NG  ++    K + +YV+Q+D+L P +TV ETL F A+ +LP++ ++ +K  R++ +++Q+GL + A   IG
Sbjct:   31 ITFKDLAYSVTVKKKKMQILKGVSGTVTPGELVAVFGPSGSGKTTLLDILANRKESGEISGAVLINGNEIDDD-YKRLCSYVVQEDVLLPTITVRETLRFYADLKLPKSWTEKEKHERIEQILEQIGLSHRADAKIG 166          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.439e-20
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  387 TKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            +K +L +I+G    G I A++G SG+GK+TL+D LA+R+      GT+ LNG   +  + K +  YV Q D L P LTV ETL F A+ ++PR +   +K  RVQ +ID++GL   A T++G
Sbjct:  135 SKQILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRLNING-SGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVG 255          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 53/125 (42.40%), Postives = 85/125 (68.00%), Query Frame = 3
Query:  384 KTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKES-LKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            +T+ +L  ++G A  G + A++G SGSGKST++DALA+R+A  + L GT+ LNG   ++++    +AYV QDD L   LTV ET+ ++A  RLP  + +S+K+  V+  I ++GL++ A TVIG+
Sbjct:   65 ETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGR--KTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDCADTVIGN 187          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WHITE_ANOGA (Protein white OS=Anopheles gambiae GN=w PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  378 FSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRI---AKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            F+  K LL +++G A+ GE++AV+G+SG+GK+TL++ALA R     K S      LNG  + +  L+   AYV QDDL  P LT  E L+F A  R+ R +  S K+ RVQ ++ +L L   A T+IG  G
Sbjct:  109 FNPRKHLLKNVTGVAKSGELLAVMGSSGAGKTTLLNALAFRSPPGVKISPNAVRALNGVPVNAEQLRARCAYVQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQHRVQEVLQELSLVKCADTIIGAPG 239          
The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
AB25G_ARATH1.056e-2135.33ABC transporter G family member 25 OS=Arabidopsis ... [more]
AB21G_ARATH1.056e-2137.50ABC transporter G family member 21 OS=Arabidopsis ... [more]
ADP1_YEAST8.944e-2139.71Probable ATP-dependent permease OS=Saccharomyces c... [more]
AB14G_ARATH1.526e-2033.99ABC transporter G family member 14 OS=Arabidopsis ... [more]
AB5G_ARATH1.992e-2034.86ABC transporter G family member 5 OS=Arabidopsis t... [more]
AB9G_ARATH3.399e-2034.01ABC transporter G family member 9 OS=Arabidopsis t... [more]
ABCGM_DICDI4.439e-2036.50ABC transporter G family member 22 OS=Dictyosteliu... [more]
ABCG1_DICDI4.439e-2041.80ABC transporter G family member 1 OS=Dictyostelium... [more]
AB11G_ARATH9.888e-2042.40ABC transporter G family member 11 OS=Arabidopsis ... [more]
WHITE_ANOGA2.203e-1941.98Protein white OS=Anopheles gambiae GN=w PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bp
CTAATCGCGTTGTTGCGGAGAATAATACATCGCCCGCAAGAGACACTTTA
CCGTTCTTCAGTACAAACTCAATGGAGCTGACCCACATCACGCGATCCGC
ATCCGGCGTGTCGCCCACGCTCGGCCAGTTGCTCAAGCGAGTCGGGGACG
TACGGAAGGAGCAAACCGGCGACGAGACTCCGGTCCATCAGATTCTCGAC
GTCAGCGACACAAGCAGCGTCGAAACAAGATCACTGCCTTTCGTTTTGTC
CTTCAACAACCTGACTTACAGCGTCAAAGCTCGCCGCAAGTCCATCACTC
TCCCCGCAGTGTTCCGCCGTCAACCTCATCCCCTCGGCGCCGTCACAGCG
ACGGATCCCGTTCCAGGCGAGAACTTGTTCTCCAAAACAAAGACTCTGTT
GAACGACATCTCCGGCGAGGCGCGCGACGGAGAAATCATGGCGGTCCTTG
GGGCTAGCGGCTCCGGGAAGTCGACTCTAATCGACGCGCTGGCGAATCGT
ATAGCGAAAGAGAGCTTGAAAGGTACCATCAAGCTAAACGGCGAAGTGTT
GGAGTCGAGGATGCTGAAGGTGATATCAGCTTACGTCATGCAAGACGACC
TTCTGTTCCCGATGCTCACCGTCGAGGAGACGCTGATGTTCGCTGCCGAG
TTTCGGCTGCCACGTACACTGTCGAAGTCGAAGAAGAAGATTCGCGTCCA
AGCTCTGATCGATCAGCTCGGCTTAAGGAACGCGGCAAAGACAGTTATAG
GAGACGAAGGACACAGGGGAGTGTCGGGCGGCGACCGACGTCGTGTCTCG
ATTGGAATCGACATAATTC
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