FC878624
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17 Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 3 Query: 243 VLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758 VLSF+N+ Y VK + G + PV K +L++I+G + G + A+LG +G GKS+L+D LA R L G + +NG L K S YV+QDD++ LTV E L F+A RLP T++ +K R+ +I +LGL A + +G + Sbjct: 36 VLSFHNICYRVKVKS----------------GFLPGRKPVE--------KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLING-ALRPTNFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADSKVGTQ 181
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17 Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 3 Query: 390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKE---SLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761 K LL ++ G A GE++AV+G+SG+GK+TL++ALA R + S G LNG+ ++++ ++ AYV QDDL LT E L+F A R+PR L+ ++ RV +I +L L T+IG G Sbjct: 110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPG 236
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17 Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 3 Query: 246 LSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPR-TLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764 L+F NLTY V ++K N ++TLL+DI+G + G ++A++G+SG+GKSTL+D LANR + + G I LNG+ + + + AYV Q+D L TV E + F+A RLP T++ K V ++D L L + A T+IG H Sbjct: 837 LTFKNLTYKVLIKKK---------------------------NHQKVSRTLLHDINGYVKPGSMVALIGSSGAGKSTLLDILANRKDQGIISGEILLNGKARDKCFNRYV-AYVEQEDTLPDFQTVREAITFSALLRLPNDTMTHQDKLDTVDYILDVLELNSIANTLIGKVDH 982
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17 Identity = 55/157 (35.03%), Postives = 92/157 (58.60%), Query Frame = 3 Query: 285 RKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755 ++S+++P H +V P+ G + K LL+DI G + G++ A++G+SG+GK+TL+D LA R ++GT LNG+ LE + I+ YV Q D+L P LTV ETL F+A+ R T+S +K V+ +++ + +++ +IGD Sbjct: 832 KESLSMPGGLFTWQHMYYSV----PIGGNTM----KLLLDDIQGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTTGQVQGTTLLNGKPLEIDFER-ITGYVEQMDVLNPALTVRETLRFSAKLRGEPTISLEEKFKYVEQVLEMMEMKHLGDALIGD 979
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WHITE_ANOAL (Protein white OS=Anopheles albimanus GN=W PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17 Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 3 Query: 378 FSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRI---AKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKI-RVQALIDQLGLRNAAKTVIGDEG 761 F+ K LL +++G AR GE++AV+G+SG+GK+TL++ LA R K S LNG + + ++ AYV QDDL P LT +E LMF A R+ R + + K+ RV ++ +L L A T+IG G Sbjct: 112 FNPRKHLLKNVTGVARSGELLAVMGSSGAGKTTLLNELAFRSPPGVKISPNAIRTLNGVPVTAEQMRARCAYVQQDDLFIPSLTTKEHLMFQAMLRMGRDVPATPIKMHRVDEVLQELSLVKCADTIIGVAG 243
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17 Identity = 57/170 (33.53%), Postives = 92/170 (54.12%), Query Frame = 3 Query: 246 LSFNNLTYSVKARR-KSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752 L+F N+ Y V ++ K + ++ + + T K T+LN++SG GE++A++G SGSGKSTL+D LA R + + G + +NG+ + K S YV Q+D+L TV ETL F A+ +LP +S+ +K RV+ +I+ +GL + IG Sbjct: 22 LTFKNIVYKVDNKKYKKLVKKQEKAKKKNDTESSTGDMNTGVSTTIEKELTILNNVSGVIEKGELVALMGPSGSGKSTLLDILAQRKSTGKITGQLLVNGKEIGEAYKKYCS-YVTQEDVLLQTSTVFETLKFYADLKLP-GVSEIEKIKRVEQIIEDIGLTKRTHSKIG 189
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG8_RAT (ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16 Identity = 44/120 (36.67%), Postives = 78/120 (65.00%), Query Frame = 3 Query: 399 LNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLK-GTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755 + ++S + R G+++A++G++G G++TL+D + R +K G I +NG+ ++++ A+V Q D L P LTV ETL F A+ RLP+T S++++ RV+ +I +L LR A T +G+ Sbjct: 110 IRNLSFKVRSGQMLAIIGSAGCGRATLLDVITGRDHGGKMKSGQIWINGQPSTPQLIQKCVAHVRQQDQLLPNLTVRETLTFIAQMRLPKTFSQAQRDKRVEDVIAELRLRQCANTRVGN 229
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG8_MOUSE (ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16 Identity = 45/120 (37.50%), Postives = 78/120 (65.00%), Query Frame = 3 Query: 399 LNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLK-GTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755 + ++S + R G+++A++G+SG G+++L+D + R +K G I +NG+ ++++ A+V Q D L P LTV ETL F A+ RLPRT S++++ RV+ +I +L LR A T +G+ Sbjct: 89 IRNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKMKSGQIWINGQPSTPQLVRKCVAHVRQHDQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCANTRVGN 208
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16 Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752 KTLL ISG+ GE++A++G SG+GKSTL++ LA + +KG + +NG + R + +S Y+MQDD+L P LTV+E +M +A +L ++ V+ ++ LGL + A T G Sbjct: 98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE--KDEGRREMVKEILTALGLLSCANTRTG 215
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16 Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 3 Query: 375 LFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752 L K K L+ ++G+ G + AV+G SG+GK+T + AL + + G I +NG+V + K I +V QDD++ LTVEE L F+A RLP L K +K + V+ +I+ LGL++ +++G Sbjct: 508 LKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVG 633 The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bpback to top |