FC878624

Overview
NameFC878624
Unique NameFC878624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  243 VLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            VLSF+N+ Y VK +                 G +    PV         K +L++I+G  + G + A+LG +G GKS+L+D LA R     L G + +NG  L     K  S YV+QDD++   LTV E L F+A  RLP T++  +K  R+  +I +LGL   A + +G +
Sbjct:   36 VLSFHNICYRVKVKS----------------GFLPGRKPVE--------KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLING-ALRPTNFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADSKVGTQ 181          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKE---SLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            K LL ++ G A  GE++AV+G+SG+GK+TL++ALA R  +    S  G   LNG+ ++++ ++   AYV QDDL    LT  E L+F A  R+PR L+  ++  RV  +I +L L     T+IG  G
Sbjct:  110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPG 236          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  246 LSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPR-TLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            L+F NLTY V  ++K                           N    ++TLL+DI+G  + G ++A++G+SG+GKSTL+D LANR  +  + G I LNG+  +    + + AYV Q+D L    TV E + F+A  RLP  T++   K   V  ++D L L + A T+IG   H
Sbjct:  837 LTFKNLTYKVLIKKK---------------------------NHQKVSRTLLHDINGYVKPGSMVALIGSSGAGKSTLLDILANRKDQGIISGEILLNGKARDKCFNRYV-AYVEQEDTLPDFQTVREAITFSALLRLPNDTMTHQDKLDTVDYILDVLELNSIANTLIGKVDH 982          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 55/157 (35.03%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  285 RKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            ++S+++P       H   +V    P+ G  +    K LL+DI G  + G++ A++G+SG+GK+TL+D LA R     ++GT  LNG+ LE    + I+ YV Q D+L P LTV ETL F+A+ R   T+S  +K   V+ +++ + +++    +IGD
Sbjct:  832 KESLSMPGGLFTWQHMYYSV----PIGGNTM----KLLLDDIQGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTTGQVQGTTLLNGKPLEIDFER-ITGYVEQMDVLNPALTVRETLRFSAKLRGEPTISLEEKFKYVEQVLEMMEMKHLGDALIGD 979          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WHITE_ANOAL (Protein white OS=Anopheles albimanus GN=W PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  378 FSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRI---AKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKI-RVQALIDQLGLRNAAKTVIGDEG 761
            F+  K LL +++G AR GE++AV+G+SG+GK+TL++ LA R     K S      LNG  + +  ++   AYV QDDL  P LT +E LMF A  R+ R +  +  K+ RV  ++ +L L   A T+IG  G
Sbjct:  112 FNPRKHLLKNVTGVARSGELLAVMGSSGAGKTTLLNELAFRSPPGVKISPNAIRTLNGVPVTAEQMRARCAYVQQDDLFIPSLTTKEHLMFQAMLRMGRDVPATPIKMHRVDEVLQELSLVKCADTIIGVAG 243          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 57/170 (33.53%), Postives = 92/170 (54.12%), Query Frame = 3
Query:  246 LSFNNLTYSVKARR-KSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            L+F N+ Y V  ++ K +       ++ +   + T            K  T+LN++SG    GE++A++G SGSGKSTL+D LA R +   + G + +NG+ +     K  S YV Q+D+L    TV ETL F A+ +LP  +S+ +K  RV+ +I+ +GL     + IG
Sbjct:   22 LTFKNIVYKVDNKKYKKLVKKQEKAKKKNDTESSTGDMNTGVSTTIEKELTILNNVSGVIEKGELVALMGPSGSGKSTLLDILAQRKSTGKITGQLLVNGKEIGEAYKKYCS-YVTQEDVLLQTSTVFETLKFYADLKLP-GVSEIEKIKRVEQIIEDIGLTKRTHSKIG 189          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG8_RAT (ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 44/120 (36.67%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  399 LNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLK-GTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            + ++S + R G+++A++G++G G++TL+D +  R     +K G I +NG+    ++++   A+V Q D L P LTV ETL F A+ RLP+T S++++  RV+ +I +L LR  A T +G+
Sbjct:  110 IRNLSFKVRSGQMLAIIGSAGCGRATLLDVITGRDHGGKMKSGQIWINGQPSTPQLIQKCVAHVRQQDQLLPNLTVRETLTFIAQMRLPKTFSQAQRDKRVEDVIAELRLRQCANTRVGN 229          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG8_MOUSE (ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 45/120 (37.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  399 LNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLK-GTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            + ++S + R G+++A++G+SG G+++L+D +  R     +K G I +NG+    ++++   A+V Q D L P LTV ETL F A+ RLPRT S++++  RV+ +I +L LR  A T +G+
Sbjct:   89 IRNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKMKSGQIWINGQPSTPQLVRKCVAHVRQHDQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCANTRVGN 208          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            KTLL  ISG+   GE++A++G SG+GKSTL++ LA    +  +KG + +NG   + R  + +S Y+MQDD+L P LTV+E +M +A  +L        ++  V+ ++  LGL + A T  G
Sbjct:   98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE--KDEGRREMVKEILTALGLLSCANTRTG 215          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  375 LFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            L  K K L+  ++G+   G + AV+G SG+GK+T + AL  +     + G I +NG+V   +  K I  +V QDD++   LTVEE L F+A  RLP  L K +K + V+ +I+ LGL++   +++G
Sbjct:  508 LKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVG 633          
The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ABCG2_MACMU4.593e-1734.30ATP-binding cassette sub-family G member 2 OS=Maca... [more]
WHITE_DROME5.999e-1740.16Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
ABCGG_DICDI5.999e-1734.48ABC transporter G family member 16 OS=Dictyosteliu... [more]
ABCGF_DICDI5.999e-1735.03ABC transporter G family member 15 OS=Dictyosteliu... [more]
WHITE_ANOAL7.835e-1740.15Protein white OS=Anopheles albimanus GN=W PE=3 SV=... [more]
ABCGC_DICDI7.835e-1733.53ABC transporter G family member 12 OS=Dictyosteliu... [more]
ABCG8_RAT1.336e-1636.67ATP-binding cassette sub-family G member 8 OS=Ratt... [more]
ABCG8_MOUSE1.336e-1637.50ATP-binding cassette sub-family G member 8 OS=Mus ... [more]
ABCG1_HUMAN1.745e-1638.84ATP-binding cassette sub-family G member 1 OS=Homo... [more]
AB28G_ARATH1.745e-1637.30ABC transporter G family member 28 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bp
CTAATCGCGTTGTTGCGGAGAATAATACATCGCCCGCAAGAGACACTTTA
CCGTTCTTCAGTACAAACTCAATGGAGCTGACCCACATCACGCGATCCGC
ATCCGGCGTGTCGCCCACGCTCGGCCAGTTGCTCAAGCGAGTCGGGGACG
TACGGAAGGAGCAAACCGGCGACGAGACTCCGGTCCATCAGATTCTCGAC
GTCAGCGACACAAGCAGCGTCGAAACAAGATCACTGCCTTTCGTTTTGTC
CTTCAACAACCTGACTTACAGCGTCAAAGCTCGCCGCAAGTCCATCACTC
TCCCCGCAGTGTTCCGCCGTCAACCTCATCCCCTCGGCGCCGTCACAGCG
ACGGATCCCGTTCCAGGCGAGAACTTGTTCTCCAAAACAAAGACTCTGTT
GAACGACATCTCCGGCGAGGCGCGCGACGGAGAAATCATGGCGGTCCTTG
GGGCTAGCGGCTCCGGGAAGTCGACTCTAATCGACGCGCTGGCGAATCGT
ATAGCGAAAGAGAGCTTGAAAGGTACCATCAAGCTAAACGGCGAAGTGTT
GGAGTCGAGGATGCTGAAGGTGATATCAGCTTACGTCATGCAAGACGACC
TTCTGTTCCCGATGCTCACCGTCGAGGAGACGCTGATGTTCGCTGCCGAG
TTTCGGCTGCCACGTACACTGTCGAAGTCGAAGAAGAAGATTCGCGTCCA
AGCTCTGATCGATCAGCTCGGCTTAAGGAACGCGGCAAAGACAGTTATAG
GAGACGAAGGACACAGGGGAGTGTCGGGCGGCGACCGACGTCGTGTCTCG
ATTGGAATCGACATAATTC
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