FC878624

Overview
NameFC878624
Unique NameFC878624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 42/121 (34.71%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            LLN+IS   + G ++ ++G  G+GKS L+  L NR+ K  ++G +K N   ++    +  + +V QDD    +LTV ETL F+A+  +   +S+ ++  RV  ++DQLGL + + T+IG++
Sbjct:  126 LLNNISFTMKPGRMILLMGIPGAGKSLLLKVLGNRLGKGKIEGELKFNNHEVDETTHQRDTIFVSQDDRHIALLTVRETLEFSAKCNMGENVSQEEQSERVDLVLDQLGLSHTSNTIIGNQ 246          

HSP 2 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  387 TKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            T  LL D++G    G + A++G SG+GKSTL+D LA R    ++ G I++NG++++   +   + YV Q D+L   LTV E + F+A  RLP +  +  +   +  ++  L L     T IG
Sbjct:  808 TLELLKDVNGFIVPG-MCALMGPSGAGKSTLMDVLAKRKNVGTITGDIRINGQLVKDMNITRFTGYVEQQDILSANLTVREAIEFSANCRLPSSYLQKDRVKLIDEILSVLSLTKMQNTTIG 928          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: YO075_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae GN=YOL075C/YOL074C PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  381 SKTKT-LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGE---VLESR---------------------MLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            SKT T L+N  S +   G +MAV+G SGSGK+TL++ LA++I+     G +  NG    VLE                          VI AY+ Q D+L P LT  ETL FAA+ +L    S+  KK+ V+ LI++LGL++ A T++GD  H
Sbjct:   38 SKTNTTLVNTFSMDLPSGSVMAVMGGSGSGKTTLLNVLASKIS-----GGLTHNGSIRYVLEDTGSEPNETEPKRAHLDGQDHPIQKHVIMAYLPQQDVLSPRLTCRETLKFAADLKL--NSSERTKKLMVEQLIEELGLKDCADTLVGDNSH 183          

HSP 2 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  372 NLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRI-----AKESLKGTIKLNGEVLESRMLKVISAYVMQ-DDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            N   +TK +L  ++   + G I A++G SGSGKS+L++ ++ R+     AK    G+I  N   +   M K + +YV Q DD L   LTV+ETL +AA  RL   L+++++  R   LI  LGL++    +IG+E
Sbjct:  701 NFHHETKEILQSVNAIFKPGMINAIMGPSGSGKSSLLNLISGRLKSSVFAKFDTSGSIMFNDIQVSELMFKNVCSYVSQDDDHLLAALTVKETLKYAAALRL-HHLTEAERMERTDNLIRSLGLKHCENNIIGNE 834          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WHT3_CAEEL (ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  369 ENLFSKT-KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLK-GTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            + LFSK  K LLN +SG A+ GE++A++GASG+GK+TL++ L  R  K   K GT+K+NG  +  + + +IS +  Q ++  P LTV+E LM  A  R+    +K  ++ RV  +I+ L L+N     IG  G
Sbjct:   46 KKLFSKKQKQLLNRVSGIAKPGEMVALMGASGAGKTTLMNVLMCRNMKGLEKNGTVKVNGTKI-GKEISLISGFAQQQEIFIPTLTVDEYLMIQARLRM--KANKHTRRERVDEIIEMLRLQNCRDLKIGTPG 175          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 62/190 (32.63%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  201 VSDTSSVETRSLP--FVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKT--KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            + +T+S + ++L    VLSF+N+ Y VK +                           G  L  KT  K +L +I+G  + G + A+LG +G GKS+L+D LA R     L G + +NG    +   K  S YV+QDD++   LTV E L F+A  RLP T++  +K  R+  +I +LGL   A + +G +
Sbjct:   19 IPETTSKDLQTLTEGAVLSFHNICYRVKVKT--------------------------GFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHGLSGDVLINGAPRPANF-KCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQ 180          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-15
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            LLN+I+G  + G ++A++G SG+GKSTL+D LANR      KG I +NG+   ++    +SAYV Q D+L P  TV+E ++F+A+ RLP  +   +K   V+ +I+ L L       IG
Sbjct:  737 LLNEINGYVKPGMLLALMGPSGAGKSTLLDVLANRKTGGHTKGQILINGQE-RTKYFTRLSAYVEQFDVLPPTQTVKEAILFSAKTRLPSDMPNEEKIKFVENIIETLNLLKIQNKQIG 854          

HSP 2 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 37/123 (30.08%), Postives = 69/123 (56.10%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            + +L+D++   + G ++ +LG+ G GK++++ ALAN++  E++ G++  NG+           AYV+Q D      TV ET  F+A+ ++    S+ +K  RV  ++  L L     TV+G+E
Sbjct:   71 RNILSDLNFFLKPGSMVLILGSPGCGKTSVMKALANQLHSETVSGSLLFNGKAANKSTHHRDVAYVVQGDHHMAPFTVRETFKFSADLQMSEGTSEEEKNARVDYILKTLDLTRQQDTVVGNE 193          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 45/126 (35.71%), Postives = 74/126 (58.73%), Query Frame = 3
Query:  375 LFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            L  K K +L  ++G+   G + AV+G SG+GK+T + ALA +    +  G I +NG        K I+ +V QDD++   LTVEE L F+A  RL   +SK+ K + ++ +I+ LGL++   +++G
Sbjct:  474 LKGKHKHILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCTRTGLILINGRNDSINSYKKITGFVPQDDVVHGNLTVEENLRFSARCRLSAYMSKADKVLIIERVIESLGLQHVRDSLVG 599          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  381 SKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESL-KGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            S+ + +LN+I G  + GE+ A++GASG+GK+TL++AL+ R+    +  GT  +NG  L+S   + I  YV Q DL     TV E L F+A  R P ++S ++K   V+ +ID L +R     ++G  G
Sbjct:  853 SEERVILNNIDGWVKPGEVTALMGASGAGKTTLLNALSERLTTGVITSGTRMVNGGELDSSFQRSI-GYVQQQDLHLETSTVREALKFSARLRQPNSVSIAEKDSYVEKIIDLLEMRTYVDAIVGVPG 979          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 58/185 (31.35%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  204 SDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            S ++ ++T +   VLSF+++ Y VK +   +     F R+                   +  K +L +I+G  + G + A+LG +G GKS+L+D LA R     L G + +NG    +   K  S YV+QDD++   LTV E L F+A  RLP T++  +K  R+  +I +LGL   A + +G +
Sbjct:   23 SSSNELKTSAGGAVLSFHDICYRVKVKSGFL-----FCRK-------------------TVEKEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHGLSGDVLINGAPRPANF-KCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQ 181          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 45/126 (35.71%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  384 KTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            K   LL+++SG  R   + A++GASGSGK+TL+D LA R     ++G I+++G   E R    I+ YV Q+D+  P +TVEE+L F++  RLP  +S+  +   V+ ++  + L      ++G +G
Sbjct:  861 KRLQLLSEVSGIFRPRVLTALVGASGSGKTTLMDVLAGRKTGGYIEGDIRISGHKKEQRTFARIAGYVEQNDIHSPQVTVEESLWFSSTLRLPNDISRETRHAFVEEVMALVELDQIRYALVGKQG 986          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  243 VLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            VLSF+N+ Y VK +                 G +    PV         K +L++I+G  + G + A+LG +G GKS+L+D LA R     L G + +NG    +   K  S YV+QDD++   LTV E L F+A  RL  T++  +K  R+  +I +LGL   A + +G +
Sbjct:   36 VLSFHNICYRVKLKS----------------GFLPCRKPVE--------KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPANF-KCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQ 181          
The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ABCG3_DICDI6.633e-1634.71ABC transporter G family member 3 OS=Dictyostelium... [more]
YO075_YEAST8.663e-1638.56Uncharacterized ABC transporter ATP-binding protei... [more]
WHT3_CAEEL8.663e-1639.85ABC transporter ATP-binding protein/permease wht-3... [more]
ABCG2_BOVIN8.663e-1632.63ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
ABCG2_DICDI1.131e-1540.34ABC transporter G family member 2 OS=Dictyostelium... [more]
WBC30_ARATH1.478e-1535.71Putative white-brown complex homolog protein 30 OS... [more]
CDR3_CANAL1.478e-1537.50Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
ABCG2_PIG1.478e-1531.35ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
PDR13_ORYSJ1.930e-1535.71Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
ABCG2_HUMAN1.930e-1533.14ATP-binding cassette sub-family G member 2 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bp
CTAATCGCGTTGTTGCGGAGAATAATACATCGCCCGCAAGAGACACTTTA
CCGTTCTTCAGTACAAACTCAATGGAGCTGACCCACATCACGCGATCCGC
ATCCGGCGTGTCGCCCACGCTCGGCCAGTTGCTCAAGCGAGTCGGGGACG
TACGGAAGGAGCAAACCGGCGACGAGACTCCGGTCCATCAGATTCTCGAC
GTCAGCGACACAAGCAGCGTCGAAACAAGATCACTGCCTTTCGTTTTGTC
CTTCAACAACCTGACTTACAGCGTCAAAGCTCGCCGCAAGTCCATCACTC
TCCCCGCAGTGTTCCGCCGTCAACCTCATCCCCTCGGCGCCGTCACAGCG
ACGGATCCCGTTCCAGGCGAGAACTTGTTCTCCAAAACAAAGACTCTGTT
GAACGACATCTCCGGCGAGGCGCGCGACGGAGAAATCATGGCGGTCCTTG
GGGCTAGCGGCTCCGGGAAGTCGACTCTAATCGACGCGCTGGCGAATCGT
ATAGCGAAAGAGAGCTTGAAAGGTACCATCAAGCTAAACGGCGAAGTGTT
GGAGTCGAGGATGCTGAAGGTGATATCAGCTTACGTCATGCAAGACGACC
TTCTGTTCCCGATGCTCACCGTCGAGGAGACGCTGATGTTCGCTGCCGAG
TTTCGGCTGCCACGTACACTGTCGAAGTCGAAGAAGAAGATTCGCGTCCA
AGCTCTGATCGATCAGCTCGGCTTAAGGAACGCGGCAAAGACAGTTATAG
GAGACGAAGGACACAGGGGAGTGTCGGGCGGCGACCGACGTCGTGTCTCG
ATTGGAATCGACATAATTC
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