FC878624

Overview
NameFC878624
Unique NameFC878624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/122 (31.97%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            LL  +SG  R G + A++G SG+GK+TL+D LA R     ++G I ++G   +      +S Y  Q+D+  P +TV E+L+F+A  RLP+ +  + +K+ ++ +++ + L+     ++G  G
Sbjct:  898 LLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPG 1019          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 43/127 (33.86%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  381 SKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            ++ + +LN++ G  + G + A++GASG+GK+TL+D LA R     + G + +NG   ++   + I  Y  Q DL     TV E+L F+A  R P ++S  +K   V+A+I  L +   A  V+G  G
Sbjct:  898 TEVRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERTTMGVITGDVMVNGRPRDTSFSRSI-GYCQQQDLHLKTATVRESLRFSAYLRQPSSVSIEEKNEYVEAVIKILEMETYADAVVGVPG 1023          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 41/122 (33.61%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            LL +++G  R G + A++G SG+GK+TL+D LA R     ++G I+++G          IS Y  Q+D+  P +TV+E+L+++A  RLP+ ++K +K   V  +++ + L +    V+G  G
Sbjct:  841 LLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPG 962          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG5_MOUSE (ATP-binding cassette sub-family G member 5 OS=Mus musculus GN=Abcg5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 44/122 (36.07%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKE-SLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            + +L D+S     G+IM +LG+SGSGK+TL+DA++ R+ +  +L+G + +NG  L     +   +YV+Q D+    LTV ETL + A   L R+ +    K +V+A++ +L L + A  +IG
Sbjct:   67 RQILKDVSLYIESGQIMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCFSYVLQSDVFLSSLTVRETLRYTAMLALCRSSADFYNK-KVEAVMTELSLSHVADQMIG 187          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKT 743
            KTLL  +SG+    E++ ++G SG+GKST ++ LA    +  +KG I +NG   E R  + +S Y+MQDD+L P LTV E +M +A  +L     +  KK  V  ++  LGL + + T
Sbjct:   82 KTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAG-YRESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSE--KQEVKKELVTEILTALGLMSCSHT 196          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 41/122 (33.61%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            LL  +SG  R G + A++G SG GK+TL+D LA R     ++G I+++G          IS Y  Q+D+  P +TV E+L+++A  RLP  + + ++K+ V  ++D + L +   +++G  G
Sbjct:  870 LLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPG 991          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 40/122 (32.79%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            LL  ++G  R G + A++G SG+GK+TL+D LA R     ++G ++++G          IS Y  Q D+  P +TV E+L+F+A  RLP+ + K +K + V  +++ + L +   +++G  G
Sbjct:  894 LLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPG 1015          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDR5_YEAST (Pleiotropic ABC efflux transporter of multiple drugs OS=Saccharomyces cerevisiae GN=PDR5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  381 SKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            ++T+ +LN++ G  + G + A++GASG+GK+TL+D LA R+    + G I +NG   +    + I  Y  Q DL     TV E+L F+A  R P  +S  +K   V+ +I  L +   A  V+G  G
Sbjct:  882 AETRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERVTMGVITGDILVNGIPRDKSFPRSI-GYCQQQDLHLKTATVRESLRFSAYLRQPAEVSIEEKNRYVEEVIKILEMEKYADAVVGVAG 1007          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGA_DICDI (ABC transporter G family member 10 OS=Dictyostelium discoideum GN=abcG10 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 45/126 (35.71%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  375 LFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            L  K   LLND+ G  + G++ A++G+SG+GK+TL+D LA R    ++ G   LNG+ L     + I+ YV Q D+  P LTV E L F+A+ R   T+S   K   V+ +++ + +++    +IG
Sbjct:  849 LNGKDLLLLNDVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMGTVTGKCLLNGKELNIDFER-ITGYVEQMDVHNPGLTVREALRFSAKLRQEPTVSLQDKYEYVEQVLEMMEMKHLGDALIG 973          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG9_DICDI (ABC transporter G family member 9 OS=Dictyostelium discoideum GN=abcG9 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 42/121 (34.71%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            K LL+D+ G  + G++ A++G+SG+GK+TL+D LA R    +++G   LNG+ LE    + I+ YV Q D+  P LTV E L F+A+ R   ++S  +K   V+ +++ + +++    ++G
Sbjct:  838 KLLLDDVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGTVQGKTFLNGKALEIDFER-ITGYVEQMDVHNPGLTVREALRFSAKLRQEPSVSLEEKYDYVEHVLEMMEMKHLGDALVG 957          
The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
PDR1_ORYSJ1.383e-1331.97Probable pleiotropic drug resistance protein 1 OS=... [more]
PDH1_CANGA1.383e-1333.86ATP-binding cassette transporter CGR1 OS=Candida g... [more]
AB29G_ARATH1.383e-1333.61ABC transporter G family member 29 OS=Arabidopsis ... [more]
ABCG5_MOUSE1.806e-1336.07ATP-binding cassette sub-family G member 5 OS=Mus ... [more]
ABCG4_HUMAN1.806e-1338.14ATP-binding cassette sub-family G member 4 OS=Homo... [more]
TUR2_SPIPO2.359e-1333.61Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
AB36G_ARATH2.359e-1332.79ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR5_YEAST3.081e-1334.65Pleiotropic ABC efflux transporter of multiple dru... [more]
ABCGA_DICDI3.081e-1335.71ABC transporter G family member 10 OS=Dictyosteliu... [more]
ABCG9_DICDI3.081e-1334.71ABC transporter G family member 9 OS=Dictyostelium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ12YF18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bp
CTAATCGCGTTGTTGCGGAGAATAATACATCGCCCGCAAGAGACACTTTA
CCGTTCTTCAGTACAAACTCAATGGAGCTGACCCACATCACGCGATCCGC
ATCCGGCGTGTCGCCCACGCTCGGCCAGTTGCTCAAGCGAGTCGGGGACG
TACGGAAGGAGCAAACCGGCGACGAGACTCCGGTCCATCAGATTCTCGAC
GTCAGCGACACAAGCAGCGTCGAAACAAGATCACTGCCTTTCGTTTTGTC
CTTCAACAACCTGACTTACAGCGTCAAAGCTCGCCGCAAGTCCATCACTC
TCCCCGCAGTGTTCCGCCGTCAACCTCATCCCCTCGGCGCCGTCACAGCG
ACGGATCCCGTTCCAGGCGAGAACTTGTTCTCCAAAACAAAGACTCTGTT
GAACGACATCTCCGGCGAGGCGCGCGACGGAGAAATCATGGCGGTCCTTG
GGGCTAGCGGCTCCGGGAAGTCGACTCTAATCGACGCGCTGGCGAATCGT
ATAGCGAAAGAGAGCTTGAAAGGTACCATCAAGCTAAACGGCGAAGTGTT
GGAGTCGAGGATGCTGAAGGTGATATCAGCTTACGTCATGCAAGACGACC
TTCTGTTCCCGATGCTCACCGTCGAGGAGACGCTGATGTTCGCTGCCGAG
TTTCGGCTGCCACGTACACTGTCGAAGTCGAAGAAGAAGATTCGCGTCCA
AGCTCTGATCGATCAGCTCGGCTTAAGGAACGCGGCAAAGACAGTTATAG
GAGACGAAGGACACAGGGGAGTGTCGGGCGGCGACCGACGTCGTGTCTCG
ATTGGAATCGACATAATTC
back to top