FC878700

Overview
NameFC878700
Unique NameFC878700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length932
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.282e-17
Identity = 58/207 (28.02%), Postives = 93/207 (44.93%), Query Frame = 3
Query:    9 WRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG---YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLPGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM--TSGEAVKYKSSLDAFSQILKNEGAKSLFKG 614
            ++GN  NVIR  P  A+ F   + +K       D+     Y   F G                Y LD  R+RL       K      +NG+ D  +  ++ +G+AGLY+G   S +G+  Y  + F  Y++LK   +P     +   S   G +    A   +YPID +RRR+ +    G+ + Y  + DAF +I+++EG   L+ G
Sbjct:  202 FKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLTTYENLFVGGAAGVTSLLC-----TYPLDLIRSRLTVQVFGNK------YNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDAFRKIIRDEGVLGLYNG 397          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.599e-17
Identity = 63/216 (29.17%), Postives = 99/216 (45.83%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----PGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NVI+  P  AL F   +  KR+    ++  G  + F                 +Y ++  +TRLA      +K G  Q+ G+ D  +  +K++G++  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  +R RM    S E     S    F QI+K EG   L++G   N L+
Sbjct:  241 SLWRGNGINVIKIAPETALKFMAYEQIKRVMGSSQETLGISERFVAGSLAGVIAQST----IYPMEVLKTRLA-----LRKTG--QYKGISDCAKHILKTEGMSAFYKGYVPNMLGIIPYAGIDLAVYETLKNTWLQRYGTENADPGVFVLLACGTVSSTCGQLASYPLALIRTRMQAQASVEGSSQVSMTGLFKQIMKTEGPTGLYRGLTPNFLK 445          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.599e-17
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLPGKLQDS----FFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  +K M+ +GI   Y+G+  + +GII Y G+   +Y++LK   L    +DS           G   +    LASYP+  +R RM    S E     +    F +I+  EG   L++G G N L+
Sbjct:  248 SLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTS----IYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLVLLGCGTASSTCGQLASYPLALIRTRMQAQASIEGAPQLNMGGLFRKIVAKEGFLGLYRGIGPNFLK 452          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.312e-17
Identity = 62/216 (28.70%), Postives = 101/216 (46.76%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLPGKLQDS----FFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA     AK G   Q++G+    +K +K +G    Y+G+  + +GII Y G+   +Y+ LK   L    +DS         + G L +    LASYP+  VR RM    + E     S +  F +I+  EG   L++G   N ++
Sbjct:  247 SLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISGSMAGATAQT----FIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQLASYPLALVRTRMQAQATVEGAPQLSMVGLFQRIVSKEGVSGLYRGITPNFMK 451          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.247e-16
Identity = 63/217 (29.03%), Postives = 103/217 (47.47%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLP----GKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+A      +K G  Q++G++D  RK +  +G+A  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F QIL+ EGA  L++G   N ++
Sbjct:  241 SLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASMEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMK 445          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.629e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----PGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM-TSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NVI+  P  A+ F   +  KR+    ++  G  + F                 +Y ++  +TR+A      +K G  Q+ G++D  +K +  +G++  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F  I+K EGA  L++G   N ++
Sbjct:  286 SLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHERFVAGSLAGVIAQSS----IYPMEVLKTRMA-----LRKTG--QYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTVSSTCGQLASYPLALVRTRMQAEASVEGAPQMTMSKLFKHIVKTEGAFGLYRGLAPNFMK 490          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.128e-16
Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLP----GKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+A      +K G  Q++G++D  R+ +  +G+A  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F QIL+ EGA  L++G   N ++
Sbjct:  241 SLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMK 445          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.128e-16
Identity = 60/216 (27.78%), Postives = 100/216 (46.30%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLPGKLQDS----FFASFALGWLITNGAGLASYPIDTVRRRMMMTSG-EAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  +K +K +G+   Y+G+  + +GII Y G+   +Y+ LK   L    +DS           G L +    LASYP+  VR RM   +  E     + +  F +I+  EG   L++G   N ++
Sbjct:  249 SLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISGSMAGATAQT----FIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSPQLNMVGLFRRIISKEGIPGLYRGITPNFMK 453          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.779e-16
Identity = 61/217 (28.11%), Postives = 102/217 (47.00%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL----PGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM-TSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NVI+  P  A+ F   +  KR+    ++  G + +  AG+              +Y ++  +TR+A      +K G  Q+ G++D  +K +  +G++  Y+G+  + +GII Y G+   +Y++LK   L            F   A G + +    LASYP+  VR RM    S E     +    F  I+K EGA  L++G   N ++
Sbjct:  285 SLWRGNGINVIKIAPESAIKFMAYEQMKRIIGSDQETLGIHERLVAGSLAGVIAQSS-----IYPMEVLKTRMA-----LRKTG--QYQGMLDCGKKILLKEGVSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAEASVEGAPQMTMSKLFKHIVKTEGAFGLYRGLAPNFMK 489          
BLAST of FC878700 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.629e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 3
Query:    3 ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLPGKLQDS----FFASFALGWLITNGAGLASYPIDTVRRRMMMTSG-EAVKYKSSLDAFSQILKNEGAKSLFKGAGANILR 635
            +LWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  +K +K +G    Y+G+  + +GII Y G+   +Y+ LK   L    +DS           G L +    LASYP+  VR RM   +  E     + +  F +I+  EG   L++G   N ++
Sbjct:  247 SLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISGSMAGATAQT----FIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGAPQLNMVGLFRRIISKEGLPGLYRGITPNFMK 451          
The following BLAST results are available for this feature:
BLAST of FC878700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MCFB_DICDI3.282e-1728.02Mitochondrial substrate carrier family protein B O... [more]
SCM2A_DANRE5.599e-1729.17Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA5.599e-1728.70Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE7.312e-1728.70Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_BOVIN1.247e-1629.03Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENLA1.629e-1627.78Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE2.128e-1628.57Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN2.128e-1627.78Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR2.779e-1628.11Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT3.629e-1627.78Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878700 ID=FC878700; Name=FC878700; organism=Citrus clementina; type=EST; length=932bp
TTGCTTTGTGGAGAGGAAATACTGCTAATGTTATCCGTTACTTCCCCACT
CAGGCCCTGAACTTTGCATTCAAGGATTACTTCAAGAGGCTCTTCAACTT
CAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAATTTGGGAT
CAGGAGGTGCTGCTGGTGCTTCATCCCTTCTCTTTGTTTACTCTTTGGAC
TATGCTCGTACCCGTCTGGCCAATGATGCCAAAGCTGCGAAGAAGGGAGG
AGAGAGGCAATTCAATGGGCTGGTTGATGTCTACAGAAAGACAATGAAAT
CTGATGGCATTGCTGGGCTTTACCGTGGTTTCAACATTTCATGTGTTGGA
ATCATTGTGTACCGTGGTCTTTACTTTGGCATGTATGATTCTCTGAAGCC
AGTGGTCTTGCCTGGAAAGTTGCAGGATAGTTTCTTTGCTAGCTTCGCCC
TTGGGTGGCTCATCACTAATGGTGCTGGTCTTGCTTCCTACCCAATTGAC
ACTGTCCGTAGAAGGATGATGATGACATCTGGTGAGGCTGTCAAGTACAA
GAGCTCTCTTGATGCATTCTCTCAGATCCTGAAGAATGAGGGTGCTAAGT
CTCTCTTCAAGGGTGCTGGAGCAAACATCCTCCGAGCTGTTGCAGGTGCC
GGTGTGCTTGCTGGTTATGACAAATTGCAGTTAATTGTCTTGGGAAGAAA
TATGGCTCTGGCGGTGCCTAAGGCATATTCCCTTTGGTTTTTTTAGCTTT
AGATATTGATGAAAATCTGATACTCTGAGAATTTTTCCGGCAGAGGGCGT
GGTCGTGGGAGGGGCATGCGCAGGCGATGAGCTTACGATATTTTCAGTCT
TGAATGTCTTTTTTGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTT
CCTCATCTTTTGTAGTCTCTCTATGTTGTTGT
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