FC917766

Overview
NameFC917766
Unique NameFC917766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HSP90_EIMTE (Heat shock protein 90 OS=Eimeria tenella GN=HSP90 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.066e-36
Identity = 74/96 (77.08%), Postives = 87/96 (90.62%), Query Frame = 3
Query:   90 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            ETFAF A+I QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+E++T+  KL  +PELFI +IPDK NN+L+I +SGIGMTKADLVNNLGTIA+S
Sbjct:    5 ETFAFNADIQQLMSLIINTFYSNKEIFLRELISNASDALDKIRYEAITEPEKLKTKPELFIRLIPDKANNTLTIENSGIGMTKADLVNNLGTIARS 100          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.230e-36
Identity = 75/97 (77.32%), Postives = 87/97 (89.69%), Query Frame = 3
Query:   87 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISNSSDA DKIR++SLT++S L  +P L I +IPD+ N +L++ DSGIGMTKADLVNNLGTIA+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQSVLGDEPHLRIRVIPDRVNKTLTVEDSGIGMTKADLVNNLGTIARS 98          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 5.230e-36
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 3
Query:   84 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADLVNNLGTIAKS
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKS 108          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 149.058 bits (375), Expect = 6.830e-36
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 3
Query:   84 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIAKS
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKS 108          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.830e-36
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 3
Query:   84 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIAKS
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKS 108          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.830e-36
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 3
Query:   84 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIAKS
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKS 108          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 149.058 bits (375), Expect = 6.830e-36
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 3
Query:   84 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIAKS
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKS 108          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 6.830e-36
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 3
Query:   84 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIAKS
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKS 108          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.920e-36
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = 3
Query:   87 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISN+SDA DKIR++SLTD S L   P L I ++PDK N +L++ D+GIGMTKADLVNNLGTIA+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARS 98          
BLAST of FC917766 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.165e-35
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 3
Query:   84 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIAKS 377
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+    +L+++D+GIGMTKADL+NNLGTIAKS
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDILPNPQERTLTLVDTGIGMTKADLINNLGTIAKS 108          
The following BLAST results are available for this feature:
BLAST of FC917766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HSP90_EIMTE3.066e-3677.08Heat shock protein 90 OS=Eimeria tenella GN=HSP90 ... [more]
HSP83_TRYBB5.230e-3677.32Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HS90B_BOVIN5.230e-3678.57Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HS90B_RAT6.830e-3677.55Heat shock protein HSP 90-beta OS=Rattus norvegicu... [more]
HS90B_PONAB6.830e-3677.55Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]
HS90B_MACFA6.830e-3677.55Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN6.830e-3677.55Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE6.830e-3677.55Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HSP83_LEIIN8.920e-3676.29Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]
HS90B_MOUSE1.165e-3576.53Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA24CB10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917766 ID=FC917766; Name=FC917766; organism=Citrus clementina; type=EST; length=378bp
CTCTCGTTCGCTTCCAAAACCCTTGTTTATAACTCAGAAGAGATCGTTTT
TTGGTTGAACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGC
CTTTCAGGCTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTT
ACAGTAACAAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGAT
GCATTGGATAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGA
TGCCCAACCAGAGCTTTTCATTCACATTATCCCTGATAAGACCAACAACT
CATTGTCTATTATTGACAGTGGTATTGGCATGACTAAAGCTGATTTGGTG
AACAACCTTGGTACAATTGCTAAGTCTG
back to top