FC917780

Overview
NameFC917780
Unique NameFC917780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length777
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917780 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.023e-39
Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 3
Query:  318 WKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGXXXXXXXXXXXXXMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 776
            W+   A Q PEYPD   L  V+  LE +PPLVFAG              G AFLLQGGDCAE+F   +A++IR+  + LLQMG VL +   +P++KVGR+AGQ++KPRS P E ++GV LP+Y+GD++NG  F E +R+PDPERL R Y  SA
Sbjct:   15 WRDLPAAQQPEYPDTEALRAVIADLESYPPLVFAGECDQLRARMAAVAKGEAFLLQGGDCAEAFDAVSADHIRNKLKTLLQMGAVLTYAASVPVVKVGRIAGQYSKPRSKPTETRDGVTLPTYRGDSVNGFDFTEAARIPDPERLKRMYHASA 167          
BLAST of FC917780 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.431e-33
Identity = 71/158 (44.94%), Postives = 94/158 (59.49%), Query Frame = 3
Query:  303 WALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGXXXXXXXXXXXXXMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 776
            WA + W++K   Q PEYPDKA LE     L+  PP+V                 G AFLLQGGDCAE F     + I    ++LLQM +VL++G   P++++GRMAGQ+AKPRS P E  NG ++PS++GD +NG  F    R  DP RL+RAY  S+
Sbjct:   12 WAPDSWRSKPIKQCPEYPDKAALEKATNELKTLPPIVLPNEIIRLREHLRDVAQGKAFLLQGGDCAELFSYCQQDVIESKIKLLLQMSLVLLWGADKPVVRIGRMAGQYAKPRSSPVETINGKEVPSFRGDILNG--FHPDERELDPNRLVRAYQYSS 167          
BLAST of FC917780 vs. ExPASy Swiss-Prot
Match: PHZC_PSEFL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas fluorescens GN=phzC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.346e-15
Identity = 49/145 (33.79%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  330 KALQLPEYPDKAQLETVLKTLEDFPPLVFAGXXXXXXXXXXXXXMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAY 764
            +ALQ P++ + +QL      L D   L+                 G A ++Q GDCAE   E  A+++     +L  +        Q P+++VGR+AGQFAKPRS+  E    V+LP Y+GD +NG       R  D +RL+R Y
Sbjct:   12 EALQQPQWSEPSQLHDAQAYLRDSASLIRVEDILVLRATLARVAAGEAMIIQCGDCAEDMDESAADHVTRKAALLDMLAGTFRLVTQQPVVRVGRIAGQFAKPRSNHSERIGDVELPVYRGDMVNGRDAVLGHRQHDAQRLVRGY 156          
BLAST of FC917780 vs. ExPASy Swiss-Prot
Match: PHZC_PSECL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas chlororaphis GN=phzC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.679e-15
Identity = 48/145 (33.10%), Postives = 70/145 (48.28%), Query Frame = 3
Query:  330 KALQLPEYPDKAQLETVLKTLEDFPPLVFAGXXXXXXXXXXXXXMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAY 764
            +A Q P++ + +QL      L D   L+                 G A ++Q GDCAE   E   +++     VL  +        Q P+++VGR+AGQFAKPRS+  E    V+LP Y+GD +NG       R  D +RL+R Y
Sbjct:   12 EAFQQPQWSEPSQLHDAQAYLRDSASLIRVEDILVLRATLARVAAGEAMVIQSGDCAEDMDESTPDHVARKAAVLDILAGTFRLVTQQPVVRVGRIAGQFAKPRSNNNERIGDVELPVYRGDMVNGREAVCGHRQHDAQRLVRGY 156          
The following BLAST results are available for this feature:
BLAST of FC917780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AROF_STRCO1.023e-3950.98Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR1.431e-3344.94Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]
PHZC_PSEFL1.346e-1533.79Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
PHZC_PSECL6.679e-1533.10Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BE01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917780 ID=FC917780; Name=FC917780; organism=Citrus clementina; type=EST; length=777bp
CTCCTTTTCAATCAATCATTCACTCTTCCGATTCCAGAGAGAACATTTAG
AATTAAAAAAAAAAAAGGACCCCGATGGCTCTCTCAAATGCATCATCAAC
TCTTTCTTCCAAGTCTCTCTATGCCAATACTCACACTCTTGCGTCCAAGC
CTCACCAACCAAATTTCTCTCTTCACCCCGCCAACACCACCAAACCAAGA
TCTCTAGTGCAACCCATCACGGCCGTCCATGCAGCTCAACCCGCCAAGAA
CTCTGCTGCTGTTAAGGAATCATCGTCGTCACCGGCAAAGGCGTCCGGGA
AATGGGCGCTGGAGGGATGGAAGACCAAGAAAGCCCTGCAGCTTCCTGAG
TACCCGGATAAAGCTCAGCTGGAGACTGTTTTGAAGACTCTGGAAGATTT
TCCTCCCCTGGTTTTTGCTGGTGAAGCAAGGAGCCTTGAGGAGAGGCTCG
CAGAGGCTGCCATGGGAAACGCTTTCTTGCTTCAGGGTGGTGACTGTGCT
GAGAGTTTCAAGGAGTTCAATGCTAATAATATTAGGGACACTTTCAGAGT
GTTGTTGCAGATGGGTGTTGTGCTTATGTTTGGCGGCCAAATGCCTATCA
TTAAGGTGGGAAGAATGGCGGGTCAATTTGCAAAGCCAAGATCAGATCCT
TTTGAGGTGAAGAATGGAGTGAAGCTGCCGAGCTACAAGGGAGACAACAT
CAATGGTGATGCTTTTGATGAGAAATCAAGAGTTCCAGACCCTGAAAGGT
TGATTAGGGCTTACTGCCAGTCTGCTG
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