FC917784

Overview
NameFC917784
Unique NameFC917784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length777
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917784 vs. ExPASy Swiss-Prot
Match: RBP56_HUMAN (TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 64/201 (31.84%), Postives = 80/201 (39.80%), Query Frame = -2
Query:  171 GLWGLDDYSGKSWGGEDNGLWGLNDYSGKSGGGEDNGLWGLDDYSGKSGGGENNGFWGFDYYAGKSWGGEDNGLWGLNDYSGKSGGGEDNGLWGLDDYSGKSGGGENNGFWGLNDDAGESGGGEDNGFWGLNDDAGESWGGEDNGFWGLNDNTGESGGGENDAFWGLNDHSGEGRCWQNNGFRGFD--NYSGKSRGGKDDF 767
            G  G   Y G+   G D G +G +   G  GG   +G     D SG   GG+ +G  G+    G  +GG+  G      Y G  GGG      G   Y G  GGG      G   D G  GG  D G  G   D G   G    G +G +   G   GG+    +G  D SG G      G  G D   Y GK  GG++D+
Sbjct:  398 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSG-GGYGGDRGGGYGGDRGG-----GYGGDRGGGYGGDRGG---YGGDRGGGYGGDRGGYGGDRGGYGG--DRG--GYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYG-GDRSGGGYGGDRGGGYGGDRGGYGGK-MGGRNDY 583          
BLAST of FC917784 vs. ExPASy Swiss-Prot
Match: Y0266_DICDI (Uncharacterized protein DDB_G0290685 OS=Dictyostelium discoideum GN=DDB_G0290685 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.480e-11
Identity = 69/197 (35.03%), Postives = 92/197 (46.70%), Query Frame = -2
Query:  174 GGEDNGLWGLNDYSGKSG--GGEDNGLWGLDDYSGKSGGGENNGFWGFDYYAGKSWGGEDNGLWGLNDYSGKSG--GGEDNGLWGLDDYSGKSGGGENNGFWGLND-DAGESG--GGEDNGFWGLNDDAGES-WGGEDNGFWGLNDNTGESG-GGENDAFWGLNDHSGEGRCWQNNGFRGFDNYSG---KSRGGKDD 728
            GGE+N   G N+  G++   GGE+N     DD   K  GGENN             GGE+N   G N+  G++   GGE+N     D        GENN   G N+ D GE+   G E+N   G N+  GE+   GE+N   G N+  GE+   GEN+   G N+  G     +NN   G DN  G      GG+D+
Sbjct:  579 GGENNQDGGENNQDGENNQDGGENNQ----DDGENKQDGGENN-----------QDGGENNQDDGENNQDGENNQDGGENNQ----DGDENNQDSGENNQDSGENNQDGGENNQDGDENNQDGGENNQDGENNQNGENNQDGGENNQDGENNQDGENNQDGGENNQDG----GENNQDGGEDNQDGGENNQEGGEDN 752          
BLAST of FC917784 vs. ExPASy Swiss-Prot
Match: GRP1_PHAVU (Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 61/175 (34.86%), Postives = 70/175 (40.00%), Query Frame = -2
Query:  246 SGKSWGGEDNGLWGLNDYSGKSGGGEDNGLWG----LDDYSGKSGGGENNGFWGFDYYAGKSWGGEDNGLWGLNDYSGKSGGGEDNGLWGLDDYSGKSG-GGENNGFWGLNDDAGESGGGEDNGFWGLNDDAGESWGGEDNGFWGLND----NTGESGGGENDAFWGLNDHSGEG 743
            +G  +G    G  G     G  GGG D G +G         G  GGG N G +G     G S GG   G  G    SG  GGGE +G  G   Y G +G GG  NG  G     G  GGG   G  G    AG  +GG   G  G         G  GGG   + +G    SGEG
Sbjct:   77 AGAGYGAAGGGHGGGGGNGGGGGGGADGGGYGGGAGKGGGEGYGGGGANGGGYGG---GGGSGGGGGGGAGGAG--SGY-GGGEGSGAGG--GYGGANGGGGGGNGGGGGGGSGGAHGGGAAGGGEGAGQGAGGGYGGGAAGGGGRGSGGGGGGGYGGGGARGSGYGGGGGSGEG 243          
BLAST of FC917784 vs. ExPASy Swiss-Prot
Match: K1C9_HUMAN (Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 51/151 (33.77%), Postives = 61/151 (40.40%), Query Frame = -2
Query:  291 SGKSWGGEDNGLWGLNDYSGKSGGGEDNGLWGLDDYSGKSGGGENNGFWGFDYYAGKSWGGEDNGLWGLNDYSGKSGGGEDNGLWGLDDYSGKSGGGENNGFWGLNDDAGESGGGEDNGFWGLNDDAGESWGGEDNGFWGLNDNTGESGGG 743
            SG S+G    G  G +   G SGGG   G        G  GGG  +G      Y G S GG          +SG SGGG   G  G  +Y G SG G  +G        G  GG    G  G +   G  +GGE  G +G  +    SGGG
Sbjct:  481 SGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGG----------HSGGSGGGHSGGSGG--NYGGGSGSGGGSG-------GGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGG 612          
The following BLAST results are available for this feature:
BLAST of FC917784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RBP56_HUMAN2.627e-1131.84TATA-binding protein-associated factor 2N OS=Homo ... [more]
Y0266_DICDI4.480e-1135.03Uncharacterized protein DDB_G0290685 OS=Dictyostel... [more]
GRP1_PHAVU7.642e-1134.86Glycine-rich cell wall structural protein 1.0 OS=P... [more]
K1C9_HUMAN9.981e-1133.77Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BE02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917784 ID=FC917784; Name=FC917784; organism=Citrus clementina; type=EST; length=777bp
AACAATTTTACCAAAATAATCGAAACATCATGAAGACCTTCCTAGCTTTA
TTCGCCCTCGTGGCTGTTGCTGTGGCCAACCCAGTGCCGCAGGGCCCAGT
GGTGCAAATCATCATCAACGTGGACTCTGAAAACAGTGCTAACGTACTCG
ATGTGGCTCAATCGCCTGAGGAAGTCGTCCTTCCCACCCCTGCTCTTCCC
GGAGTAATTGTCGAAGCCCCGGAATCCATTGTTCTGCCAGCACCTGCCCT
CCCCGGAGTGGTCGTTGAGGCCCCAGAAAGCATCGTTCTCCCCGCCCCCG
CTCTCCCCGGTGTTGTCGTTGAGACCCCAGAATCCATTGTCCTCCCCGCC
CCAGCTCTCCCCGGCGTCATCGTTGAGACCCCAGAATCCATTGTCCTCCC
CGCCCCCGCTCTCCCCGGCGTCATCGTTGAGACCCCAGAATCCATTGTTC
TCCCCGCCCCCGCTCTTCCCGGAGTAGTCGTCGAGACCCCAGAGTCCATT
GTCCTCCCCGCCCCCGCTCTTCCCGGAGTAGTCGTTGAGACCCCAGAGTC
CATTGTCCTCCCCGCCCCAGCTCTTCCCGGCATAGTAGTCGAAACCCCAG
AATCCATTGTTCTCCCCGCCCCCGCTCTTCCCGGAGTAGTCGTCGAGACC
CCAGAGTCCATTGTCCTCCCCGCCCCCGCTCTTCCCGGAGTAGTCGTTGA
GACCCCAGAGTCCATTGTCCTCCCCGCCCCAGCTCTTCCCGGAGTAGTCG
TCGAGACCCCAGAGTCCATTGTCCTCC
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