FC917845

Overview
NameFC917845
Unique NameFC917845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_DICDI (Eukaryotic translation initiation factor 2 subunit 1 OS=Dictyostelium discoideum GN=eif2s1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.289e-53
Identity = 117/264 (44.32%), Postives = 158/264 (59.85%), Query Frame = 1
Query:  121 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLG-----IDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMR----------KAEAAGNND----CPVKIKLVAPPLYVL 855
            +CRMYE +YPE +  VM+++++I DMG YVSLLEYNNIEGMIL SE             +VG+ E V+V+RVDK+KGYIDLSKRRV+ E+   CEER++KSK VH I+R+VA  L      +  + LY    WPLY KYGHA+EAFK+ +T+P SV N                      + E  +  L++ I +++ PQP K+RAD+E+ C+ ++G+  IK A+           KA   G  D      V IKLVAPPLYV+
Sbjct:    6 DCRMYEKKYPEENELVMVRIESIGDMGVYVSLLEYNNIEGMILLSEISRRRIRSINKLVRVGKTEAVVVVRVDKDKGYIDLSKRRVTPEEYAQCEERFHKSKAVHGIVRYVATKLSTEDNVVKTKHLYTKFVWPLYTKYGHAYEAFKLSITEP-SVFNGFD-------------------IAENERKVLMETIIQKLKPQPHKVRADLEITCYDYEGIDAIKHAITASQNHALSVLKAPEDGKFDEKAFGVVTIKLVAPPLYVM 249          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_DROME (Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila melanogaster GN=eIF-2alpha PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.248e-52
Identity = 111/254 (43.70%), Postives = 155/254 (61.02%), Query Frame = 1
Query:  118 LECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGID----LEELYVNIGWPLYRKYGH---AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            L  R Y  RYPE++  VM+ V +IA+MGAYV LLEYNNIEGMIL SE             +VG+ EPV+V+RVDKEKGYIDLSKRRVS ED++ C ER+ K+K ++S++RHVA+ LG +    LE+LY    W   +KY +   A++ FK  VTDP +V +    E                    E K+ L+ NI+R++    +KIRADIE  C+ ++G+  +K ++ K       + P++I L+APPLYV+T
Sbjct:    3 LTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTERFAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDIFKQSVTDP-TVFDECNLE-------------------PETKEVLLSNIKRKLVSPTVKIRADIECSCYGYEGIDAVKASLTKGLELSTEELPIRINLIAPPLYVMT 236          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_METJA (Translation initiation factor 2 subunit alpha OS=Methanocaldococcus jannaschii GN=eif2a PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.998e-22
Identity = 73/236 (30.93%), Postives = 115/236 (48.73%), Query Frame = 1
Query:  145 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKA-EAAGNNDCPVKIKLVAPPLY 849
            +PE    V+  VK++   GA+V LLEY   EGMI  SE             KVG+     VLRVD+ KG+IDLS +RV+E+  +A  + + + +    ++   AE LG  LEE +  +G+ L  ++G  + AF+ +V +   VL+ L                    ++EE K+ L +  +  +    +++   IEMK +  DG+  IK A+  A +A    D  VKI  +  P Y
Sbjct:    8 FPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKVLRVDERKGHIDLSLKRVTEQQKRAKVQEWKRFQRASKMLERAAEKLGKSLEEAWEEVGYLLEDEFGELYNAFETMVIEGKEVLDDL-------------------EISEEWKNVLYEVAKESIELTNVEVEGVIEMKSYAPDGIKQIKKALTTALKANPYEDVEVKITYIGAPKY 224          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_METKA (Translation initiation factor 2 subunit alpha OS=Methanopyrus kandleri GN=eif2a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.479e-18
Identity = 64/237 (27.00%), Postives = 110/237 (46.41%), Query Frame = 1
Query:  148 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLT 858
            PE    VM  V+ + D GA+V+L EY  ++G I  SE             K G+     V+RV+ ++ Y +LS R+V++   +   + + + +    ++   AE LG DL+E Y   G+ L  +YG  ++A              L R   E GP+      V     E++ +  ++NI     P  +KI A +++ C   +GV  I++A+ K E     D  ++++ V  P Y +T
Sbjct:    9 PEEGEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVASGWVKNIRDYVKEGQKVVAKVIRVNPKRKYANLSLRKVTDHQRKEKLKEWKREQRAEKLLEMAAEELGKDLDEAYEEAGYKLIEEYGSLYDA--------------LERAAAEEGPEPLLKAGVPEEWAEKLAELAIENIE----PGRVKIEAYVDLTCPAPNGVEIIREALEKIEEFQQGDVKMEVQYVGAPRYRIT 227          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_PYRKO (Translation initiation factor 2 subunit alpha OS=Pyrococcus kodakaraensis GN=eif2a PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.904e-17
Identity = 64/228 (28.07%), Postives = 111/228 (48.68%), Query Frame = 1
Query:  145 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIK 828
            YPE    V+  VKNI   GA+++L EY   EG +  SE             K G+     V+RVD EKG+IDLS +RV+++  +A  + Y +++   ++++  AE LG D E  +  +  PL  +YG  + AF                  ++   +G +V K +  +++E  +AL   I   +    + I A+ E+   + +G+  IK+A+ KA    N +  +++K
Sbjct:    8 YPEEGEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFETAWREVWVPLEEEYGEVYAAF------------------EDAAQNGMDVLKGL--ISDEWIEALKPIIEAYVEIPTVTIDAEFEITVPKPNGIEIIKEALIKARDRANQEKDIEVK 215          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_THEGJ (Translation initiation factor 2 subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17
Identity = 65/228 (28.51%), Postives = 109/228 (47.81%), Query Frame = 1
Query:  145 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIK 828
            YPE    V+  VKNI   GA++ L EY   EG +  SE             K G+   V V+RVD EKG+IDLS +RV+++  +A  + Y +++   ++++  AE +G D E  +  +  PL  +YG  + AF                  ++   +G EV K +  + +E  DAL   I   +    + I A+ E+   + +G+  IK+A+ +A    N +  + +K
Sbjct:    8 YPEEGEFVVATVKNIHPYGAFLILDEYPGKEGFMHISEVAPTWVKNIRDYVKEGQKVVVKVIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKIGKDFETAWREVWVPLEEEYGEVYAAF------------------EDAAQNGIEVLKGL--IPDEWLDALKPIIEAYVEIPTVTIDAEFEITVPKPNGIEIIKEALIRARDRANEEKDIDVK 215          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_ARCFU (Translation initiation factor 2 subunit alpha OS=Archaeoglobus fulgidus GN=eif2a PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 68/235 (28.94%), Postives = 106/235 (45.11%), Query Frame = 1
Query:  145 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLY 849
            YP     V+  VK + D GA+VSL EY   EGM+  SE             K G+     VL V+ ++G+IDLS + V+E   +   +++         +  + E L ID +EL   IG  L ++Y   + AF                  +E   +G EV  + P V EE    + +  R  + P+ +K+R   E+K    DG+  IK A+ +A+ A  N   +K++ V  P Y
Sbjct:   13 YPSKGEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIREHVKKGQKVICKVLDVNPKRGHIDLSIKDVNERQRREKLQQWKNEMKAFKWLEIIGEKLNIDFKEL-EKIGKKLMKEYDSVYSAF------------------EEAAFEGYEV--LAPIVGEEFAKEMAEIARENIKPKRVKVRGYFELKSSASDGIERIKKALLEAKKALVNGVEMKLEYVGAPKY 226          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_HYPBU (Translation initiation factor 2 subunit alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.210e-16
Identity = 67/239 (28.03%), Postives = 111/239 (46.44%), Query Frame = 1
Query:  148 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCP-VKIKL--VAPPLYVL 855
            P+V   V+  VK + D GAY++L EY  +E  + +SE             K G+   V V+RV+K K  +D+S +RV++ + +     + +++    I+  VA+ LG  LEE Y  +G  L   YG    AF+ +V   +  L       +E G            V EE    L++ I+R +  + +KI   + ++    DG+  +K  +   + A  N  P +K+KL  V  P Y L
Sbjct:    9 PDVGELVVATVKEVYDYGAYLTLDEYGGLEAYLPWSEVASRWVRSIHDVVKPGQKIVVKVIRVNKRKKQVDVSLKRVTDSERRRKMMEWKRAQKAERILELVAQKLGKSLEEAYEAVGKKLEDYYGELMAAFEEVVIRGEQAL-------REAG------------VPEEWVQPLLEEIKRHVEVKRVKIAGVLTVRSLAGDGIERVKKVLLTVKDAIENSSPDIKVKLYTVGAPRYRL 228          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_THEON (Translation initiation factor 2 subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.193e-16
Identity = 62/228 (27.19%), Postives = 109/228 (47.81%), Query Frame = 1
Query:  145 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIK 828
            YPE    V+  VK+I   GA++ L EY   EG +  SE             K G+     V+RVD  KG+IDLS +RV+++  +A  + Y +++   ++++  AE LG D E  +  +  PL  +YG  + AF                  ++   +G EV K +  + EE  + L + ++  +    + I A+ E+   + +G+  IK+A+ +A    N D  +++K
Sbjct:    8 YPEEGEFVIATVKSIHPYGAFLKLDEYPGKEGFMHISEVASTWVKNIRDYVKEGQKVVAKVIRVDPNKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFEMAWQEVWVPLEEEYGEVYAAF------------------EDAAQNGIEVLKGI--IPEEWLEPLNEIVQNYVEVPTVTIDAEFEITVPKPNGIEIIKEALIRARDRVNEDKDIEVK 215          
BLAST of FC917845 vs. ExPASy Swiss-Prot
Match: IF2A_PYRFU (Translation initiation factor 2 subunit alpha OS=Pyrococcus furiosus GN=eif2a PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 63/228 (27.63%), Postives = 114/228 (50.00%), Query Frame = 1
Query:  145 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVVPAVTEEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIK 828
            YPE    V+  VK + + GA++ L EY   EG +  SE             + G+     V+RVD +KG+IDLS RRV+++  +A  + + +++   ++++  AE LG D EE +  +  PL  ++G  + AF+      D+  N +   +K   PD     + +P V +E+ D+ V+          + I A+ E+   + +G+  IK+A+ KA    N +  +++K
Sbjct:    8 YPEEGELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLREGQKVVAKVIRVDPKKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFEEAWREVWVPLENEWGEVYAAFE------DAARNGI-EVLKGYVPD-----EWLP-VLKEIIDSYVE-------VPTVTIDAEFEITVPKPNGIEIIKEALIKARDRANQEKDIEVK 215          
The following BLAST results are available for this feature:
BLAST of FC917845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IF2A_DICDI4.289e-5344.32Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DROME1.248e-5243.70Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_METJA2.998e-2230.93Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_METKA4.479e-1827.00Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_PYRKO2.904e-1728.07Translation initiation factor 2 subunit alpha OS=P... [more]
IF2A_THEGJ4.953e-1728.51Translation initiation factor 2 subunit alpha OS=T... [more]
IF2A_ARCFU6.468e-1728.94Translation initiation factor 2 subunit alpha OS=A... [more]
IF2A_HYPBU3.210e-1628.03Translation initiation factor 2 subunit alpha OS=H... [more]
IF2A_THEON4.193e-1627.19Translation initiation factor 2 subunit alpha OS=T... [more]
IF2A_PYRFU4.636e-1527.63Translation initiation factor 2 subunit alpha OS=P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917845 ID=FC917845; Name=FC917845; organism=Citrus clementina; type=EST; length=860bp
CTCTCTGGTTGTCTTAAAACCCTAATTCTTGTTCCCACTCCCTTCGTATT
TTCCCGAGAAAACGCAAAAGCTAAAAAGCTTTCCGAGCAACCAATCATGG
CAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTACCCG
GAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACATGGG
CGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATCCTTT
TCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCATTAAA
GTCGGCCGCATCGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGG
TTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAAGCCT
GTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCGACAC
GTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATATTGG
CTGGCCCTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAAATCA
TTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGTCAAA
GAAATTGGCCCTGATGGACAGGAGGTAACTAAGGTGGTTCCTGCTGTGAC
GGAGGAAGTGAAAGATGCTTTGGTAAAAAATATTAGGAGAAGAATGACCC
CACAGCCATTGAAGATTCGAGCTGACATTGAAATGAAATGCTTCCAGTTT
GATGGAGTTCTTCATATTAAGGATGCCATGCGGAAAGCTGAGGCTGCTGG
CAACAATGACTGCCCTGTGAAAATCAAATTGGTTGCTCCCCCCTTGTATG
TGCTTACTAC
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