FC917857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 9.799e-27 Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 + QP+ GK++ YQL G+NWL LYE GINGILADEMGLGKT+Q+I+LL +L E I GP ++++P STL NW E RF P + + + GNP +R+ IR Sbjct: 510 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 611
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 9.799e-27 Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 + QP+ GK++ YQL G+NWL LYE GINGILADEMGLGKT+Q+I+LL +L E I GP ++++P STL NW E RF P + + + GNP +R+ IR Sbjct: 508 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 609
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.672e-26 Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 1 Query: 586 QPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERR 876 QPS + G ++DYQ+ GL W++ L+ N +NGILADEMGLGKT+QTISLL YL+E + I GP++V+ P STL NW +E ++ P LR + F G+P ER+ Sbjct: 758 QPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERK 855
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.672e-26 Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 V+QP + ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E I GP +VVAP STL NW EI +F P L+ + + G+ ++R+ +R+ Sbjct: 786 VSQPKMLTCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHNWQQEIVKFVPDLKVLPYWGSAKDRKVLRK 888
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26 Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 ++QP ++ +++YQ+ GLNWL LYE GINGILADEMGLGKT+Q+IS+L YL E I GP +VV P STL NW EI RF P + + + GN ++R+ +R+ Sbjct: 557 ISQPDLLKCTLKEYQVKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETHNIWGPFLVVTPASTLHNWQQEISRFVPEFKVIPYWGNAKDRKVLRK 659
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 4.863e-26 Identity = 68/185 (36.76%), Postives = 96/185 (51.89%), Query Frame = 1 Query: 403 RLKYLLQQTELFSHFAKGDQSASQK-------------KAKGRGRHA------SKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900 R ++LL + LF HF + + K KG+G+H ++ D + P+ + G++R YQ+ G+NWL+ L++N I GILADEMGLGKTLQTIS LGYL I GP +V+APKSTL NW+ EI R+ P + A G+ EER + + L+ Sbjct: 108 RFEHLLSLSGLFKHFIESKAAKDPKFRQVLDVLEENKANGKGKGKHQDVRRRKTEHEEDAELLKEEDSDDDESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLL 292
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.863e-26 Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 + QP I ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E I GP +VVAP STL NW EI +F P + + + G +R+ +R+ Sbjct: 1035 IEQPKLINAQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHNWQQEIAKFVPEFKILPYWGGASDRKVLRK 1137
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 6.352e-26 Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 571 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894 T V P +G +++YQ+ GL WL+ YE G+NGILADEMGLGKT+Q ++ L +L E + I GP +VVAP S L NW +EI RFCP L+ + + G +ER +R+N+ Sbjct: 573 TSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNI 680
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26 Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1 Query: 562 LSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER 873 + L P I+ +RDYQ AGL+WL+ LY+N INGILADEMGLGKTLQ ISLL YL + I GPH+V+ P S L NW E++RFCP + + + GN ER Sbjct: 646 MDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNER 749
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum GN=INO80 PE=3 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.083e-25 Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 559 GLSNTR-LVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 GL N + QP + +++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E I GP +V+AP STL NW EI +F P L + + G ++R+ +R+ Sbjct: 803 GLQNKEDWIPQPKLLNCTLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAERYNIWGPFLVIAPASTLHNWQQEIAKFVPDLNVIPYWGTAKDRKVLRK 913 The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bpback to top |