FC917857

Overview
NameFC917857
Unique NameFC917857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 9.799e-27
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            + QP+   GK++ YQL G+NWL  LYE GINGILADEMGLGKT+Q+I+LL +L E   I GP ++++P STL NW  E  RF P  + + + GNP +R+ IR
Sbjct:  510 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 611          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 9.799e-27
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            + QP+   GK++ YQL G+NWL  LYE GINGILADEMGLGKT+Q+I+LL +L E   I GP ++++P STL NW  E  RF P  + + + GNP +R+ IR
Sbjct:  508 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR 609          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.672e-26
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  586 QPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERR 876
            QPS  + G ++DYQ+ GL W++ L+ N +NGILADEMGLGKT+QTISLL YL+E + I GP++V+ P STL NW +E  ++ P LR + F G+P ER+
Sbjct:  758 QPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERK 855          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.672e-26
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            V+QP  +  ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P L+ + + G+ ++R+ +R+
Sbjct:  786 VSQPKMLTCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHNWQQEIVKFVPDLKVLPYWGSAKDRKVLRK 888          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            ++QP  ++  +++YQ+ GLNWL  LYE GINGILADEMGLGKT+Q+IS+L YL E   I GP +VV P STL NW  EI RF P  + + + GN ++R+ +R+
Sbjct:  557 ISQPDLLKCTLKEYQVKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETHNIWGPFLVVTPASTLHNWQQEISRFVPEFKVIPYWGNAKDRKVLRK 659          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.863e-26
Identity = 68/185 (36.76%), Postives = 96/185 (51.89%), Query Frame = 1
Query:  403 RLKYLLQQTELFSHFAKGDQSASQK-------------KAKGRGRHA------SKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900
            R ++LL  + LF HF +   +   K               KG+G+H       ++               D     +    P+ + G++R YQ+ G+NWL+ L++N I GILADEMGLGKTLQTIS LGYL     I GP +V+APKSTL NW+ EI R+ P + A    G+ EER  + +  L+
Sbjct:  108 RFEHLLSLSGLFKHFIESKAAKDPKFRQVLDVLEENKANGKGKGKHQDVRRRKTEHEEDAELLKEEDSDDDESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLL 292          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.863e-26
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            + QP  I  ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P  + + + G   +R+ +R+
Sbjct: 1035 IEQPKLINAQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHNWQQEIAKFVPEFKILPYWGGASDRKVLRK 1137          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.352e-26
Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  571 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894
            T  V  P   +G +++YQ+ GL WL+  YE G+NGILADEMGLGKT+Q ++ L +L E + I GP +VVAP S L NW +EI RFCP L+ + + G  +ER  +R+N+
Sbjct:  573 TSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNI 680          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  562 LSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER 873
            +    L   P  I+  +RDYQ AGL+WL+ LY+N INGILADEMGLGKTLQ ISLL YL  +  I GPH+V+ P S L NW  E++RFCP  + + + GN  ER
Sbjct:  646 MDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNER 749          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum GN=INO80 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.083e-25
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  559 GLSNTR-LVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            GL N    + QP  +   +++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P L  + + G  ++R+ +R+
Sbjct:  803 GLQNKEDWIPQPKLLNCTLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAERYNIWGPFLVIAPASTLHNWQQEIAKFVPDLNVIPYWGTAKDRKVLRK 913          
The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
INO80_MOUSE9.799e-2752.94Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
INO80_HUMAN9.799e-2752.94Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
SNF2_YEAST1.672e-2654.08Transcription regulatory protein SNF2 OS=Saccharom... [more]
INO80_COCIM1.672e-2653.40Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
INO80_DEBHA2.851e-2652.43Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]
ISW1_YEAST4.863e-2636.76ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]
INO80_GIBZE4.863e-2652.43Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
INO80_ARATH6.352e-2649.07DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
HEPF1_PLAF78.296e-2653.85Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]
INO80_PHANO1.083e-2550.45Putative DNA helicase INO80 OS=Phaeosphaeria nodor... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bp
AAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCGAAACC
CTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCCAGTT
CGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGAG
GAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATAA
CTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAAG
AGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCAG
AGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAACTATT
GGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAGG
GCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGCG
AAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCCA
TGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAGGAAG
AAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTATT
CAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATACG
GTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGTCTTG
GTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTTCAGA
GGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTGGTAA
CTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTGAAGT
TTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACTGGTT
GCTG
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