FC917857

Overview
NameFC917857
Unique NameFC917857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.414e-25
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  577 LVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            ++ QPS +   +++YQL GLNWL  LY+ GINGILADEMGLGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + GN  +R+ +R
Sbjct:  789 VIEQPSILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAEKYNIWGPFLVVTPASTLHNWVNEISKFVPQFKILPYWGNSNDRKILR 891          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_CANAL (Putative DNA helicase INO80 OS=Candida albicans GN=INO80 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.414e-25
Identity = 53/103 (51.46%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            + QP+ ++  +++YQL GLNWL  LYE GINGILADEMGLGKT+Q+IS+L YL E   + GP +VV P STL NW  EI +F P  + + + GN ++R+ +R+
Sbjct:  662 IPQPNMLKCTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRK 764          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.152e-25
Identity = 72/191 (37.70%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  403 RLKYLLQQTELFSHF----AKGDQ----------------SASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTR----LVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900
            R KYLL  T+LF HF    AK D+                S S        RH  K               + +   +    +   PS ++ GK+RDYQ+ GLNWLI L+EN ++GILADEMGLGKTLQTIS LGYL   + I GP +++ PKSTL NW  E  ++ P +  +   G+ + R  I  N+++
Sbjct:   90 RFKYLLGVTDLFRHFIGIKAKHDKNIQKLLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIIL 280          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_NEUCR (Putative DNA helicase ino-80 OS=Neurospora crassa GN=ino-80 PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 3.152e-25
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  469 SQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            +QKKA+   +  SKL                +     + QP  +  ++++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +VVAP STL NW  EI +F P  + + + G   +R+ +R+
Sbjct: 1075 AQKKAREFNKEESKLDEDGEMNFQNPTMMGDVE----IEQPKLLNCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKYDIWGPFLVVAPASTLHNWQQEITKFVPQFKVLPYWGTAGDRKVLRK 1210          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            + QP  +   +++YQL GLNWL  LY+ GINGILADEMGLGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + GN  +R+ +R+
Sbjct:  696 IEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRK 798          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            + QP  +   +++YQL GLNWL  LY+ GINGILADEMGLGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + GN  +R+ +R+
Sbjct:  702 IEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRK 804          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_LODEL (Putative DNA helicase ino80 OS=Lodderomyces elongisporus GN=INO80 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.023e-25
Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            + QP  ++  +++YQ+ GLNWL  LYE GINGILADEMGLGKT+Q+IS+L YL E   I GP +VV P STL NW  EI +F P  + + + G+ ++R+ +R+
Sbjct:  727 IEQPKMLKCTLKEYQIKGLNWLANLYEQGINGILADEMGLGKTVQSISVLSYLAETHNIWGPFLVVTPASTLHNWQQEISKFVPNFKVLPYWGHAKDRKVLRK 829          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_KLULA (Putative DNA helicase INO80 OS=Kluyveromyces lactis GN=INO80 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.023e-25
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            + QP  +   +++YQL GLNWL  LY+ GINGILADEMGLGKT+Q+IS+L +L +   I GP +VV P STL NW+NEI RF P  + + + GN  +R+ +R+
Sbjct:  736 IDQPKMLACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLADRYNIWGPFIVVTPASTLHNWVNEISRFVPQFKILPYWGNANDRKTLRK 838          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            + QP  +   +++YQL GLNWL  LY+ GINGILADEMGLGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI +F P  + + + G+  +R+ +R+
Sbjct:  712 IEQPKMLACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAEHHNIWGPFLVVTPASTLHNWVNEISKFVPQFKILPYWGSANDRKVLRK 814          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.198e-24
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            + QP  +   +++YQL GLNWL  LY+ GINGILADEMGLGKT+Q+IS+L +L E   I GP +VV P STL NW+NEI++F P  + + + GN  +R+ +R
Sbjct:  645 IEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAERYNIWGPFIVVTPASTLHNWVNEIQKFVPDFKILPYWGNGNDRKILR 746          
The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
INO80_VANPO2.414e-2552.43Putative DNA helicase INO80 OS=Vanderwaltozyma pol... [more]
INO80_CANAL2.414e-2551.46Putative DNA helicase INO80 OS=Candida albicans GN... [more]
ISW2_YEAST3.152e-2537.70ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
INO80_NEUCR3.152e-2542.86Putative DNA helicase ino-80 OS=Neurospora crassa ... [more]
INO80_YEAST4.117e-2551.46Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_YEAS74.117e-2551.46Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_LODEL7.023e-2550.49Putative DNA helicase ino80 OS=Lodderomyces elongi... [more]
INO80_KLULA7.023e-2551.46Putative DNA helicase INO80 OS=Kluyveromyces lacti... [more]
INO80_CANGA9.172e-2550.49Putative DNA helicase INO80 OS=Candida glabrata GN... [more]
INO80_ASHGO1.198e-2451.96Putative DNA helicase INO80 OS=Ashbya gossypii GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bp
AAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCGAAACC
CTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCCAGTT
CGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGAG
GAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATAA
CTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAAG
AGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCAG
AGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAACTATT
GGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAGG
GCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGCG
AAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCCA
TGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAGGAAG
AAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTATT
CAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATACG
GTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGTCTTG
GTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTTCAGA
GGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTGGTAA
CTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTGAAGT
TTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACTGGTT
GCTG
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