FC917857

Overview
NameFC917857
Unique NameFC917857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  574 RLVTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            +L  QPS I+G ++RD+QL G+NW+  L+    NGILADEMGLGKT+QT+  L YL       GP ++V P ST+  W   +  + P L ++ + GN E R +IRE
Sbjct:  377 KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIRE 482          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  577 LVTQPSCIQG----KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            L  QPS I G    ++RDYQL GLNWL   +  G + ILADEMGLGKT+QTIS L YL     + GP ++V P STL +W  EI+ +   + AV +LG+   R  IR
Sbjct:  464 LKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIR 570          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  577 LVTQPSCIQG----KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            L  QPS I G    ++RDYQL GLNWL   +  G + ILADEMGLGKT+QTIS L YL     + GP ++V P STL +W  EI+ +   + AV +LG+   R  IR
Sbjct:  466 LKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIR 572          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: EP400_HUMAN (E1A-binding protein p400 OS=Homo sapiens GN=EP400 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.858e-18
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            PS + G +RDYQ  GL+WL +LY   +NGILADE GLGKT+Q I+   +L    G  GPH+VV     +  W  E++R+CP L+ + ++G+  E +  R+
Sbjct: 1084 PSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQ 1183          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: EP400_MOUSE (E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            PS + G +RDYQ  GL+WL +LY   +NGILADE GLGKT+Q I+   +L    G  GPH+VV     +  W  E++R+CP L+ + ++G+  E +  R+
Sbjct: 1083 PSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVMRSCNILKWELELKRWCPGLKTLSYVGSHRELKAKRQ 1182          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.086e-17
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  574 RLVTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            +L  QPS I G ++RD+QL G+NW+  L+    NGILADEMGLGKT+QT++ L YL       GP +VV P ST+  W   +  +   +  + +LGN   R+ IR+
Sbjct:  362 KLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRD 467          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.852e-17
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  577 LVTQPSCIQGK---MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            L  QP+ + G+   +RDYQL GLNWL   +    + ILADEMGLGKT+QTIS L YL     + GP ++V P STL +W  E   + P +  V ++G+   R  IRE
Sbjct:  470 LKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE 576          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.160e-17
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  610 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894
            +R YQL G+ WL    +N    IL DEMGLGKT QTISLL Y      + GP +V+ P + L NW  E+ RFCP L  + + G+ E+R  +++NL
Sbjct:   35 LRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNL 129          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1L_MOUSE (Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus GN=Chd1l PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894
            ++R YQL G+NWL++ +      IL DEMGLGKT QTI+LL YL       GP +V+ P S L NW  E+ RF P L  V + G+ EER  ++++L
Sbjct:   39 RLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDL 134          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.193e-17
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  466 ASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ---GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREN 891
            A Q++AKG G    ++T                   +   QP  I    G +  YQL G+NWL   + NG + ILADEMGLGKT+Q+++ L  L +     GP ++ AP ST+ NW  E   +CP    V ++G+ E R  IRE+
Sbjct:  571 AKQREAKGLGPKEDEVTSRRKKREKIDILK------KYEVQPDFISETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREH 709          
The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
HRP1_SCHPO3.376e-1945.28Chromodomain helicase hrp1 OS=Schizosaccharomyces ... [more]
CHD1_MOUSE1.675e-1848.60Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]
CHD1_HUMAN1.675e-1848.60Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]
EP400_HUMAN2.858e-1843.00E1A-binding protein p400 OS=Homo sapiens GN=EP400 ... [more]
EP400_MOUSE3.732e-1843.00E1A-binding protein p400 OS=Mus musculus GN=Ep400 ... [more]
HRP3_SCHPO1.086e-1743.40Chromodomain helicase hrp3 OS=Schizosaccharomyces ... [more]
CHD2_HUMAN1.852e-1744.86Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
CHD1L_DANRE3.160e-1745.26Chromodomain-helicase-DNA-binding protein 1-like O... [more]
CHD1L_MOUSE4.127e-1745.83Chromodomain-helicase-DNA-binding protein 1-like O... [more]
CHD3_CAEEL9.193e-1735.86Chromodomain-helicase-DNA-binding protein 3 homolo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bp
AAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCGAAACC
CTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCCAGTT
CGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGAG
GAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATAA
CTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAAG
AGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCAG
AGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAACTATT
GGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAGG
GCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGCG
AAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCCA
TGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAGGAAG
AAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTATT
CAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATACG
GTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGTCTTG
GTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTTCAGA
GGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTGGTAA
CTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTGAAGT
TTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACTGGTT
GCTG
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