FC917857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19 Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1 Query: 574 RLVTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 +L QPS I+G ++RD+QL G+NW+ L+ NGILADEMGLGKT+QT+ L YL GP ++V P ST+ W + + P L ++ + GN E R +IRE Sbjct: 377 KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIRE 482
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18 Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 577 LVTQPSCIQG----KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 L QPS I G ++RDYQL GLNWL + G + ILADEMGLGKT+QTIS L YL + GP ++V P STL +W EI+ + + AV +LG+ R IR Sbjct: 464 LKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIR 570
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18 Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 577 LVTQPSCIQG----KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 L QPS I G ++RDYQL GLNWL + G + ILADEMGLGKT+QTIS L YL + GP ++V P STL +W EI+ + + AV +LG+ R IR Sbjct: 466 LKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIR 572
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: EP400_HUMAN (E1A-binding protein p400 OS=Homo sapiens GN=EP400 PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 2.858e-18 Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 Query: 589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 PS + G +RDYQ GL+WL +LY +NGILADE GLGKT+Q I+ +L G GPH+VV + W E++R+CP L+ + ++G+ E + R+ Sbjct: 1084 PSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQ 1183
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: EP400_MOUSE (E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18 Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 Query: 589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 PS + G +RDYQ GL+WL +LY +NGILADE GLGKT+Q I+ +L G GPH+VV + W E++R+CP L+ + ++G+ E + R+ Sbjct: 1083 PSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVMRSCNILKWELELKRWCPGLKTLSYVGSHRELKAKRQ 1182
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.086e-17 Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1 Query: 574 RLVTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 +L QPS I G ++RD+QL G+NW+ L+ NGILADEMGLGKT+QT++ L YL GP +VV P ST+ W + + + + +LGN R+ IR+ Sbjct: 362 KLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRD 467
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.852e-17 Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1 Query: 577 LVTQPSCIQGK---MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 L QP+ + G+ +RDYQL GLNWL + + ILADEMGLGKT+QTIS L YL + GP ++V P STL +W E + P + V ++G+ R IRE Sbjct: 470 LKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE 576
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.160e-17 Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 610 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894 +R YQL G+ WL +N IL DEMGLGKT QTISLL Y + GP +V+ P + L NW E+ RFCP L + + G+ E+R +++NL Sbjct: 35 LRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNL 129
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1L_MOUSE (Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus GN=Chd1l PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17 Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1 Query: 607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894 ++R YQL G+NWL++ + IL DEMGLGKT QTI+LL YL GP +V+ P S L NW E+ RF P L V + G+ EER ++++L Sbjct: 39 RLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDL 134
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 9.193e-17 Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 1 Query: 466 ASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ---GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREN 891 A Q++AKG G ++T + QP I G + YQL G+NWL + NG + ILADEMGLGKT+Q+++ L L + GP ++ AP ST+ NW E +CP V ++G+ E R IRE+ Sbjct: 571 AKQREAKGLGPKEDEVTSRRKKREKIDILK------KYEVQPDFISETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREH 709 The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bpback to top |